-
1
-
-
65149103048
-
Constructing genomic maps of positive selection in humans: where do we go from here?
-
Akey JM (2009) Constructing genomic maps of positive selection in humans: where do we go from here? Genome Research, 19, 711-722.
-
(2009)
Genome Research
, vol.19
, pp. 711-722
-
-
Akey, J.M.1
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biology, 11, R106.
-
(2010)
Genome Biology
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
3
-
-
84896902748
-
Recent novel approaches for population genomics data analysis
-
Andrews KR, Luikart G (2014) Recent novel approaches for population genomics data analysis. Molecular Ecology, 23, 1661-1667.
-
(2014)
Molecular Ecology
, vol.23
, pp. 1661-1667
-
-
Andrews, K.R.1
Luikart, G.2
-
4
-
-
80054759105
-
Molecular spandrels: tests of adaptation at the genetic level
-
Barrett RDH, Hoekstra HE (2011) Molecular spandrels: tests of adaptation at the genetic level. Nature Reviews Genetics, 12, 767-780.
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 767-780
-
-
Barrett, R.D.H.1
Hoekstra, H.E.2
-
5
-
-
84862179132
-
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata
-
Barrett T, Clark K, Gevorgyan R, Gorelenkov V et al. (2012) BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Research, 40, D57-D63.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. D57-D63
-
-
Barrett, T.1
Clark, K.2
Gevorgyan, R.3
Gorelenkov, V.4
-
6
-
-
0002402959
-
Birds and butterflies along urban gradients in two ecoregions of the U.S
-
In: (eds Lockwood JL & McKinney ML). Kluwer Academic Publishers, New York, NY.
-
Blair RB (2001) Birds and butterflies along urban gradients in two ecoregions of the U.S. In: Biotic Homogenization (eds Lockwood JL & McKinney ML), pp. 33-56. Kluwer Academic Publishers, New York, NY.
-
(2001)
Biotic Homogenization
, pp. 33-56
-
-
Blair, R.B.1
-
7
-
-
35548940373
-
Toward a molecular phylogeny for Peromyscus: evidence from mitochrondrial cytochrome-b sequences
-
Bradley RD, Durish ND, Rogers DS et al. (2007) Toward a molecular phylogeny for Peromyscus: evidence from mitochrondrial cytochrome-b sequences. Journal of Mammalogy, 88, 1146-1159.
-
(2007)
Journal of Mammalogy
, vol.88
, pp. 1146-1159
-
-
Bradley, R.D.1
Durish, N.D.2
Rogers, D.S.3
-
8
-
-
84865300368
-
Reference-free transcriptome assembly in non-model animals from next-generation sequencing data
-
Cahais V, Gayral P, Tsagkogeorga G et al. (2012) Reference-free transcriptome assembly in non-model animals from next-generation sequencing data. Molecular Ecology Resources, 12, 834-845.
-
(2012)
Molecular Ecology Resources
, vol.12
, pp. 834-845
-
-
Cahais, V.1
Gayral, P.2
Tsagkogeorga, G.3
-
10
-
-
84861909700
-
Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice
-
Cheviron Z, Bachman GC, Connaty AD, McClelland GB, Storz JF (2012) Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice. Proceedings of the National Academy of Sciences of the United States of America, 109, 8635-8640.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 8635-8640
-
-
Cheviron, Z.1
Bachman, G.C.2
Connaty, A.D.3
McClelland, G.B.4
Storz, J.F.5
-
11
-
-
84890869597
-
Functional genomics of adaptation to hypoxic cold-stress in high-altitude deer mice: transcriptomic plasticity and thermogenic performance
-
Cheviron Z, Connaty A, McClelland G, Storz J (2013) Functional genomics of adaptation to hypoxic cold-stress in high-altitude deer mice: transcriptomic plasticity and thermogenic performance. Evolution, 68, 48-62.
-
(2013)
Evolution
, vol.68
, pp. 48-62
-
-
Cheviron, Z.1
Connaty, A.2
McClelland, G.3
Storz, J.4
-
12
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Götz S, García-Gómez JM et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics (Oxford, England), 21, 3674-3676.
-
(2005)
Bioinformatics (Oxford, England)
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
García-Gómez, J.M.3
-
13
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
Consortium TU (2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Research, 42, D191-D198.
-
(2014)
Nucleic Acids Research
, vol.42
, pp. D191-D198
-
-
-
14
-
-
84867503105
-
The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis
-
De Wit P, Pespeni MH, Ladner JT et al. (2012) The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis. Molecular Ecology Resources, 12, 1058-1067.
-
(2012)
Molecular Ecology Resources
, vol.12
, pp. 1058-1067
-
-
De Wit, P.1
Pespeni, M.H.2
Ladner, J.T.3
-
15
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genetics, 43, 491-498.
-
(2011)
Nature Genetics
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
-
16
-
-
0035088740
-
Deer mice: "the Drosophila of North American Mammalogy"
-
Dewey MJ, Dawson WD, Carolina S (2001) Deer mice: "the Drosophila of North American Mammalogy". Genesis, 29, 105-109.
-
(2001)
Genesis
, vol.29
, pp. 105-109
-
-
Dewey, M.J.1
Dawson, W.D.2
Carolina, S.3
-
17
-
-
33745628747
-
Phylogeography of the deer mouse (Peromyscus maniculatus) provides a predictive framework for research on hantaviruses
-
Dragoo JW, Lackey JA, Moore KE et al. (2006) Phylogeography of the deer mouse (Peromyscus maniculatus) provides a predictive framework for research on hantaviruses. The Journal of General Virology, 87, 1997-2003.
-
(2006)
The Journal of General Virology
, vol.87
, pp. 1997-2003
-
-
Dragoo, J.W.1
Lackey, J.A.2
Moore, K.E.3
-
18
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
Ekblom R, Galindo J (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107, 1-15.
-
(2011)
Heredity
, vol.107
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
19
-
-
84888274008
-
Genome sequencing and population genomics in non-model organisms
-
Ellegren H (2014) Genome sequencing and population genomics in non-model organisms. Trends in Ecology & Evolution, 29, 51-63.
-
(2014)
Trends in Ecology & Evolution
, vol.29
, pp. 51-63
-
-
Ellegren, H.1
-
20
-
-
36849035794
-
msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design
-
Faircloth BC (2008) msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources, 8, 92-94.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 92-94
-
-
Faircloth, B.C.1
-
21
-
-
84901292350
-
Fast and efficient estimation of individual ancestry coefficients
-
Frichot E, Mathieu F, Trouillon T, Bouchard G, François O (2014) Fast and efficient estimation of individual ancestry coefficients. Genetics, 196, 973-983.
-
(2014)
Genetics
, vol.196
, pp. 973-983
-
-
Frichot, E.1
Mathieu, F.2
Trouillon, T.3
Bouchard, G.4
François, O.5
-
22
-
-
60649104806
-
Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus)
-
Gering EJ, Opazo JC, Storz JF (2009) Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus). Heredity, 102, 226-235.
-
(2009)
Heredity
, vol.102
, pp. 226-235
-
-
Gering, E.J.1
Opazo, J.C.2
Storz, J.F.3
-
23
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn TC (2011) Field guide to next-generation DNA sequencers. Molecular Ecology Resources, 11, 759-769.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
24
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, 29, 644-652.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
-
25
-
-
84858591099
-
Targeted sequence capture as a powerful tool for evolutionary analysis1
-
Grover CE, Salmon A, Wendel JF (2012) Targeted sequence capture as a powerful tool for evolutionary analysis1. American Journal of Botany, 99, 312-319.
-
(2012)
American Journal of Botany
, vol.99
, pp. 312-319
-
-
Grover, C.E.1
Salmon, A.2
Wendel, J.F.3
-
26
-
-
84873451950
-
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
-
Gutschner T, Hämmerle M, Eissmann M et al. (2013) The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Research, 73, 1180-1189.
-
(2013)
Cancer Research
, vol.73
, pp. 1180-1189
-
-
Gutschner, T.1
Hämmerle, M.2
Eissmann, M.3
-
27
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
-
Haas BJ, Papanicolaou A, Yassour M et al. (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols, 8, 1494-1512.
-
(2013)
Nature Protocols
, vol.8
, pp. 1494-1512
-
-
Haas, B.J.1
Papanicolaou, A.2
Yassour, M.3
-
28
-
-
84883181072
-
Signatures of rapid evolution in urban and rural transcriptomes of white-footed mice (Peromyscus leucopus) in the New York metropolitan area
-
N Johnson, Ed.
-
Harris SE, Munshi-South J, Obergfell C, O'Neill R (2013) Signatures of rapid evolution in urban and rural transcriptomes of white-footed mice (Peromyscus leucopus) in the New York metropolitan area (N Johnson, Ed.). PLoS One, 8, e74938.
-
(2013)
PLoS One
, vol.8
, pp. e74938
-
-
Harris, S.E.1
Munshi-South, J.2
Obergfell, C.3
O'Neill, R.4
-
29
-
-
78650164073
-
Using population genomics to detect selection in natural populations: key concepts and methodological considerations
-
Hohenlohe PA, Phillips PC, Cresko WA (2010) Using population genomics to detect selection in natural populations: key concepts and methodological considerations. International Journal of Plant Sciences, 171, 1059-1071.
-
(2010)
International Journal of Plant Sciences
, vol.171
, pp. 1059-1071
-
-
Hohenlohe, P.A.1
Phillips, P.C.2
Cresko, W.A.3
-
30
-
-
79960892661
-
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
-
Iorizzo M, Senalik DA, Grzebelus D et al. (2011) De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. BMC Genomics, 12, 389.
-
(2011)
BMC Genomics
, vol.12
, pp. 389
-
-
Iorizzo, M.1
Senalik, D.A.2
Grzebelus, D.3
-
31
-
-
80052521697
-
Synthetic spike-in standards for RNA-seq experiments
-
Jiang L, Schlesinger F, Davis C (2011) Synthetic spike-in standards for RNA-seq experiments. Genome Research, 21, 1543-1551.
-
(2011)
Genome Research
, vol.21
, pp. 1543-1551
-
-
Jiang, L.1
Schlesinger, F.2
Davis, C.3
-
32
-
-
84860395764
-
Investigating niche and lineage diversification in widely distributed taxa: phylogeography and ecological niche modeling of the Peromyscus maniculatus species group
-
Kalkvik HM, Stout IJ, Doonan TJ, Parkinson CL (2012) Investigating niche and lineage diversification in widely distributed taxa: phylogeography and ecological niche modeling of the Peromyscus maniculatus species group. Ecography, 35, 54-64.
-
(2012)
Ecography
, vol.35
, pp. 54-64
-
-
Kalkvik, H.M.1
Stout, I.J.2
Doonan, T.J.3
Parkinson, C.L.4
-
34
-
-
84897112764
-
A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map)
-
Kenney-Hunt J, Lewandowski A, Glenn TC et al. (2014) A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map). Mammalian Genome, 25, 160-179.
-
(2014)
Mammalian Genome
, vol.25
, pp. 160-179
-
-
Kenney-Hunt, J.1
Lewandowski, A.2
Glenn, T.C.3
-
35
-
-
84894269814
-
Accuracy of allele frequency estimation using pooled RNA-Seq
-
Konczal M, Koteja P, Stuglik MT, Radwan J, Babik W (2013) Accuracy of allele frequency estimation using pooled RNA-Seq. Molecular Ecology Resources, 14, 381-392.
-
(2013)
Molecular Ecology Resources
, vol.14
, pp. 381-392
-
-
Konczal, M.1
Koteja, P.2
Stuglik, M.T.3
Radwan, J.4
Babik, W.5
-
36
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nature Methods, 9, 357-359.
-
(2012)
Nature Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
37
-
-
84872435140
-
Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis
-
Lenz T, Eizaguirre C, Rotter B, Kalbe M, Milinski M (2013) Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis. Molecular Ecology, 22, 774-786.
-
(2013)
Molecular Ecology
, vol.22
, pp. 774-786
-
-
Lenz, T.1
Eizaguirre, C.2
Rotter, B.3
Kalbe, M.4
Milinski, M.5
-
38
-
-
69549110251
-
On the origin and spread of an adaptive allele in deer mice
-
Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE (2009) On the origin and spread of an adaptive allele in deer mice. Science (New York, N.Y.), 325, 1095-1098.
-
(2009)
Science (New York, N.Y.)
, vol.325
, pp. 1095-1098
-
-
Linnen, C.R.1
Kingsley, E.P.2
Jensen, J.D.3
Hoekstra, H.E.4
-
39
-
-
84874963219
-
Adaptive evolution of multiple traits through multiple mutations at a single gene
-
Linnen CR, Poh Y-P, Peterson BK et al. (2013) Adaptive evolution of multiple traits through multiple mutations at a single gene. Science, 339, 1312-1316.
-
(2013)
Science
, vol.339
, pp. 1312-1316
-
-
Linnen, C.R.1
Poh, Y.-P.2
Peterson, B.K.3
-
41
-
-
84893683722
-
On the optimal trimming of high-throughput mRNA sequence data
-
Macmanes MD (2014) On the optimal trimming of high-throughput mRNA sequence data. Frontiers in Genetics, 5, 13.
-
(2014)
Frontiers in Genetics
, vol.5
, pp. 13
-
-
Macmanes, M.D.1
-
42
-
-
84885140594
-
Improving transcriptome assembly through error correction of high-throughput sequence reads
-
Macmanes MD, Eisen MB (2013) Improving transcriptome assembly through error correction of high-throughput sequence reads. PeerJ, 1, e113.
-
(2013)
PeerJ
, vol.1
, pp. e113
-
-
Macmanes, M.D.1
Eisen, M.B.2
-
44
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet, 17, 10-12.
-
(2011)
EMBnet
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
45
-
-
83655201166
-
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
-
McCormack JE, Maley JM, Hird SM et al. (2011) Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences. Molecular Phylogenetics and Evolution, 62, 397-406.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.62
, pp. 397-406
-
-
McCormack, J.E.1
Maley, J.M.2
Hird, S.M.3
-
46
-
-
84891557430
-
Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population
-
McCoy RC, Garud NR, Kelley JL, Boggs CL, Petrov D (2013) Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population. Molecular Ecology, 23, 136-150.
-
(2013)
Molecular Ecology
, vol.23
, pp. 136-150
-
-
McCoy, R.C.1
Garud, N.R.2
Kelley, J.L.3
Boggs, C.L.4
Petrov, D.5
-
47
-
-
84891961350
-
Climate change, adaptation, and phenotypic plasticity: the problem and the evidence
-
Merilä J, Hendry AP (2014) Climate change, adaptation, and phenotypic plasticity: the problem and the evidence. Evolutionary Applications, 7, 1-14.
-
(2014)
Evolutionary Applications
, vol.7
, pp. 1-14
-
-
Merilä, J.1
Hendry, A.P.2
-
48
-
-
33845964664
-
ART2, a T cell surface mono-ADP-ribosyltransferase, generates extracellular poly(ADP-ribose)
-
Morrison AR, Moss J, Stevens LA et al. (2006) ART2, a T cell surface mono-ADP-ribosyltransferase, generates extracellular poly(ADP-ribose). The Journal of Biological Chemistry, 281, 33363-33372.
-
(2006)
The Journal of Biological Chemistry
, vol.281
, pp. 33363-33372
-
-
Morrison, A.R.1
Moss, J.2
Stevens, L.A.3
-
49
-
-
0031985311
-
Genetic analysis of the diversity and origin of hantaviruses in Peromyscus leucopus mice in North America
-
Morzunov SP, Rowe JE, Ksiazek TG et al. (1998) Genetic analysis of the diversity and origin of hantaviruses in Peromyscus leucopus mice in North America. Journal of Virology, 72, 57-64.
-
(1998)
Journal of Virology
, vol.72
, pp. 57-64
-
-
Morzunov, S.P.1
Rowe, J.E.2
Ksiazek, T.G.3
-
50
-
-
0035103030
-
Effects of habitat fragmentation on population genetic structure in the white-footed mouse (Peromyscus leucopus)
-
Mossman CA, Waser PM (2001) Effects of habitat fragmentation on population genetic structure in the white-footed mouse (Peromyscus leucopus). Canadian Journal of Zoology, 79, 285-295.
-
(2001)
Canadian Journal of Zoology
, vol.79
, pp. 285-295
-
-
Mossman, C.A.1
Waser, P.M.2
-
51
-
-
47349131008
-
Natural selection along an environmental gradient: a classic cline in mouse pigmentation
-
Mullen LM, Hoekstra HE (2008) Natural selection along an environmental gradient: a classic cline in mouse pigmentation. Evolution, 62, 1555-1570.
-
(2008)
Evolution
, vol.62
, pp. 1555-1570
-
-
Mullen, L.M.1
Hoekstra, H.E.2
-
52
-
-
84858082085
-
Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City
-
Munshi-South J (2012) Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City. Molecular Ecology, 21, 1360-1378.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1360-1378
-
-
Munshi-South, J.1
-
53
-
-
77957244580
-
Rapid, pervasive genetic differentiation of urban white-footed mouse (Peromyscus leucopus) populations in New York City
-
Munshi-South J, Kharchenko K (2010) Rapid, pervasive genetic differentiation of urban white-footed mouse (Peromyscus leucopus) populations in New York City. Molecular Ecology, 19, 4242-4254.
-
(2010)
Molecular Ecology
, vol.19
, pp. 4242-4254
-
-
Munshi-South, J.1
Kharchenko, K.2
-
54
-
-
84897932406
-
Urban park characteristics, genetic variation, and historical demography of white-footed mouse (Peromyscus leucopus) populations in New York City
-
Munshi-South J, Nagy C (2014) Urban park characteristics, genetic variation, and historical demography of white-footed mouse (Peromyscus leucopus) populations in New York City. PeerJ, 2, e310.
-
(2014)
PeerJ
, vol.2
, pp. e310
-
-
Munshi-South, J.1
Nagy, C.2
-
55
-
-
84878935899
-
Epistasis among adaptive mutations in deer mouse hemoglobin
-
Natarajan C, Inoguchi N, Weber R et al. (2013) Epistasis among adaptive mutations in deer mouse hemoglobin. Science, 340, 1324-1327.
-
(2013)
Science
, vol.340
, pp. 1324-1327
-
-
Natarajan, C.1
Inoguchi, N.2
Weber, R.3
-
56
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
Nielsen R, Williamson S, Kim Y et al. (2005) Genomic scans for selective sweeps using SNP data. Genome Research, 15, 1566-1575.
-
(2005)
Genome Research
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
Williamson, S.2
Kim, Y.3
-
59
-
-
78751570979
-
RNA sequencing: advances, challenges and opportunities
-
Ozsolak F, Milos P (2010) RNA sequencing: advances, challenges and opportunities. Nature Reviews Genetics, 12, 87-98.
-
(2010)
Nature Reviews Genetics
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.2
-
61
-
-
84868682153
-
What is needed for next-generation ecological and evolutionary genomics?
-
Pavey SA, Bernatchez L, Aubin-Horth N, Landry CR (2012) What is needed for next-generation ecological and evolutionary genomics? Trends in Ecology & Evolution, 27, 673-678.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 673-678
-
-
Pavey, S.A.1
Bernatchez, L.2
Aubin-Horth, N.3
Landry, C.R.4
-
62
-
-
37349053519
-
Rapid morphological and genetic change in Chicago-area Peromyscus
-
Pergams ORW, Lacy RC (2007) Rapid morphological and genetic change in Chicago-area Peromyscus. Molecular Ecology, 17, 450-463.
-
(2007)
Molecular Ecology
, vol.17
, pp. 450-463
-
-
Pergams, O.R.W.1
Lacy, R.C.2
-
63
-
-
84861691274
-
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species
-
Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE (2012) Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS One, 7, e37135.
-
(2012)
PLoS One
, vol.7
, pp. e37135
-
-
Peterson, B.K.1
Weber, J.N.2
Kay, E.H.3
Fisher, H.S.4
Hoekstra, H.E.5
-
64
-
-
84902302866
-
First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill
-
Pinosio S, González-Martínez SC, Bagnoli F et al. (2014) First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill. Molecular Ecology Resources, 14, 846-856.
-
(2014)
Molecular Ecology Resources
, vol.14
, pp. 846-856
-
-
Pinosio, S.1
González-Martínez, S.C.2
Bagnoli, F.3
-
65
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
67
-
-
40749124056
-
Comparative genome mapping of the deer mouse (Peromyscus maniculatus) reveals greater similarity to rat (Rattus norvegicus) than to the lab mouse (Mus musculus)
-
Ramsdell CM, Lewandowski AA, Glenn JLW et al. (2008) Comparative genome mapping of the deer mouse (Peromyscus maniculatus) reveals greater similarity to rat (Rattus norvegicus) than to the lab mouse (Mus musculus). BMC Evolutionary Biology, 8, 65.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 65
-
-
Ramsdell, C.M.1
Lewandowski, A.A.2
Glenn, J.L.W.3
-
68
-
-
77954850804
-
Ecological genomics - changing perspectives on Darwin's basic concerns
-
Renn SCP, Siemens DH (2010) Ecological genomics - changing perspectives on Darwin's basic concerns. Molecular Ecology, 19, 3025-3030.
-
(2010)
Molecular Ecology
, vol.19
, pp. 3025-3030
-
-
Renn, S.C.P.1
Siemens, D.H.2
-
69
-
-
84886247852
-
Genetic structure of the white-footed mouse in the context of the emergence of Lyme disease in southern Québec
-
Rogic A, Tessier N, Legendre P, Lapointe F-J, Millien V (2013) Genetic structure of the white-footed mouse in the context of the emergence of Lyme disease in southern Québec. Ecology and Evolution, 3, 2075-2088.
-
(2013)
Ecology and Evolution
, vol.3
, pp. 2075-2088
-
-
Rogic, A.1
Tessier, N.2
Legendre, P.3
Lapointe, F.-J.4
Millien, V.5
-
70
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology, 132, 365-386.
-
(2000)
Methods in Molecular Biology
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
71
-
-
84866645261
-
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data
-
Sacomoto GAT, Kielbassa J, Chikhi R et al. (2012) KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. BMC Bioinformatics, 13, S5.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S5
-
-
Sacomoto, G.A.T.1
Kielbassa, J.2
Chikhi, R.3
-
73
-
-
79951606548
-
Evolution and behavioural responses to human-induced rapid environmental change
-
Sih A, Ferrari MCO, Harris DJ (2011) Evolution and behavioural responses to human-induced rapid environmental change. Evolutionary Applications, 4, 367-387.
-
(2011)
Evolutionary Applications
, vol.4
, pp. 367-387
-
-
Sih, A.1
Ferrari, M.C.O.2
Harris, D.J.3
-
74
-
-
34548694067
-
Adaptive variation in beach mice produced by two interacting pigmentation genes
-
Steiner CC, Weber JN, Hoekstra HE (2007) Adaptive variation in beach mice produced by two interacting pigmentation genes. PLoS Biology, 5, e219.
-
(2007)
PLoS Biology
, vol.5
, pp. e219
-
-
Steiner, C.C.1
Weber, J.N.2
Hoekstra, H.E.3
-
75
-
-
34047218882
-
The molecular basis of high-altitude adaptation in deer mice
-
Storz JF, Sabatino SJ, Hoffmann FG et al. (2007) The molecular basis of high-altitude adaptation in deer mice. PLoS Genetics, 3, e45.
-
(2007)
PLoS Genetics
, vol.3
, pp. e45
-
-
Storz, J.F.1
Sabatino, S.J.2
Hoffmann, F.G.3
-
77
-
-
77954843627
-
Genetic differences in hemoglobin function between highland and lowland deer mice
-
Storz JF, Runck AM, Moriyama H, Weber RE, Fago A (2010) Genetic differences in hemoglobin function between highland and lowland deer mice. The Journal of Experimental Biology, 213, 2565-2574.
-
(2010)
The Journal of Experimental Biology
, vol.213
, pp. 2565-2574
-
-
Storz, J.F.1
Runck, A.M.2
Moriyama, H.3
Weber, R.E.4
Fago, A.5
-
78
-
-
84901012599
-
Landscape models for nuclear genetic diversity and genetic structure in white-footed mice (Peromyscus leucopus)
-
Taylor ZS, Hoffman SMG (2014) Landscape models for nuclear genetic diversity and genetic structure in white-footed mice (Peromyscus leucopus). Heredity, 112, 588-595.
-
(2014)
Heredity
, vol.112
, pp. 588-595
-
-
Taylor, Z.S.1
Hoffman, S.M.G.2
-
79
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: survey and analysis
-
Toth G (2000) Microsatellites in different eukaryotic genomes: survey and analysis. Genome Research, 10, 967-981.
-
(2000)
Genome Research
, vol.10
, pp. 967-981
-
-
Toth, G.1
-
80
-
-
84896009017
-
From FastQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline
-
Van der Auwera GA, Carneiro MO, Hartl C et al. (2013) From FastQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline. Current Protocols in Bioinformatics, 11, 11.10.1-11.10.33.
-
(2013)
Current Protocols in Bioinformatics
, vol.11
, pp. 11101-111033
-
-
Van der Auwera, G.A.1
Carneiro, M.O.2
Hartl, C.3
-
81
-
-
60849133862
-
Linking behavior, life history and food supply with the population dynamics of white-footed mice (Peromyscus leucopus)
-
Vessey S, Vessey KB (2007) Linking behavior, life history and food supply with the population dynamics of white-footed mice (Peromyscus leucopus). Integrative Zoology, 2, 123-130.
-
(2007)
Integrative Zoology
, vol.2
, pp. 123-130
-
-
Vessey, S.1
Vessey, K.B.2
-
82
-
-
84872483518
-
Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments
-
Vijay N, Poelstra J, Künstner A, Wolf J (2013) Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments. Molecular Ecology, 22, 620-634.
-
(2013)
Molecular Ecology
, vol.22
, pp. 620-634
-
-
Vijay, N.1
Poelstra, J.2
Künstner, A.3
Wolf, J.4
-
84
-
-
84872589694
-
Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice
-
Weber JN, Peterson BK, Hoekstra HE (2013) Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice. Nature, 493, 402-405.
-
(2013)
Nature
, vol.493
, pp. 402-405
-
-
Weber, J.N.1
Peterson, B.K.2
Hoekstra, H.E.3
-
85
-
-
84879330562
-
Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
-
Wolf JBW (2013) Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial. Molecular Ecology Resources, 13, 559-572.
-
(2013)
Molecular Ecology Resources
, vol.13
, pp. 559-572
-
-
Wolf, J.B.W.1
-
86
-
-
0022230895
-
Comparative population ecology of Peromyscus leucopus and Peromyscus maniculatus
-
Wolff JO (1985) Comparative population ecology of Peromyscus leucopus and Peromyscus maniculatus. Canadian Journal of Zoology, 63, 1548-1555.
-
(1985)
Canadian Journal of Zoology
, vol.63
, pp. 1548-1555
-
-
Wolff, J.O.1
-
87
-
-
84897111313
-
Prevention, diagnosis and treatment of high-throughput sequencing data pathologies
-
Zhou X, Rokas A (2014) Prevention, diagnosis and treatment of high-throughput sequencing data pathologies. Molecular Ecology, 23, 1679-1700.
-
(2014)
Molecular Ecology
, vol.23
, pp. 1679-1700
-
-
Zhou, X.1
Rokas, A.2
|