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Volumn 24, Issue 2, 2015, Pages 410-423

DNA methylation analysis of human myoblasts during in vitro myogenic differentiation: De novo methylation of promoters of muscle-related genes and its involvement in transcriptional down-regulation

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL DIFFERENTIATION; CONTROLLED STUDY; CPG ISLAND; DEVELOPMENTAL GENE; DNA FLANKING REGION; DNA METHYLATION; DNA MICROARRAY; DNA SEQUENCE; DOWN REGULATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE ONTOLOGY; HUMAN; HUMAN CELL; HUMAN TISSUE; IN VITRO STUDY; MALE; MESENCHYMAL STEM CELL; MUSCLE DEVELOPMENT; MYOBLAST; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; REAL TIME POLYMERASE CHAIN REACTION; TRANSCRIPTION REGULATION; CELL CULTURE; CYTOLOGY; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; SKELETAL MUSCLE;

EID: 84922463818     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddu457     Document Type: Article
Times cited : (40)

References (36)
  • 1
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: provocative insights from epigenomics
    • Suzuki, M.M. and Bird, A. (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet., 9, 465-476.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 2
    • 77957372037 scopus 로고    scopus 로고
    • Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues
    • Ghosh, S., Yates, A.J., Frühwald, M.C., Miecznikowski, J.C., Plass, C. and Smiraglia, D. (2010) Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues. Epigenetics, 5, 527-538.
    • (2010) Epigenetics , vol.5 , pp. 527-538
    • Ghosh, S.1    Yates, A.J.2    Frühwald, M.C.3    Miecznikowski, J.C.4    Plass, C.5    Smiraglia, D.6
  • 4
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird, A.P. (1986) CpG-rich islands and the function of DNA methylation. Nature, 321, 209-213.
    • (1986) Nature , vol.321 , pp. 209-213
    • Bird, A.P.1
  • 5
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • Li, E., Bestorm, T.H. and Jaenisch, R. (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell, 69, 915-926.
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestorm, T.H.2    Jaenisch, R.3
  • 6
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • Okano, M., Bellm, D.W., Haber, D.A. and Li, E. (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell, 99, 247-257.
    • (1999) Cell , vol.99 , pp. 247-257
    • Okano, M.1    Bellm, D.W.2    Haber, D.A.3    Li, E.4
  • 9
    • 80052410699 scopus 로고    scopus 로고
    • Epigenetic regulation of satellite cell activation during muscle regeneration
    • Dilworth, F.J. and Blais, A. (2011) Epigenetic regulation of satellite cell activation during muscle regeneration. Stem Cell Res. Ther., 2, 18.
    • (2011) Stem Cell Res. Ther. , vol.2 , pp. 18
    • Dilworth, F.J.1    Blais, A.2
  • 10
    • 0018581647 scopus 로고
    • Multiple new phenotypes induced in 10T1/2 and 3T3 cells treated with 5-azacytidine
    • Taylor, S.M. and Jones, P.A. (1979) Multiple new phenotypes induced in 10T1/2 and 3T3 cells treated with 5-azacytidine. Cell, 17, 771-779.
    • (1979) Cell , vol.17 , pp. 771-779
    • Taylor, S.M.1    Jones, P.A.2
  • 11
    • 0023663888 scopus 로고
    • Expression of a single transfected cDNA converts fibroblasts to myoblasts
    • Davis, R.L., Weintraub, H. and Lassar, A.B. (1987) Expression of a single transfected cDNA converts fibroblasts to myoblasts. Cell, 51, 987-1000.
    • (1987) Cell , vol.51 , pp. 987-1000
    • Davis, R.L.1    Weintraub, H.2    Lassar, A.B.3
  • 12
    • 77955288574 scopus 로고    scopus 로고
    • Interplay between DNA methylation and transcription factor availability: implications for developmental activation of the mouse Myogenin gene
    • Palacios, D., Summerbell, D., Rigby, P.W. and Boyes, J. (2010) Interplay between DNA methylation and transcription factor availability: implications for developmental activation of the mouse Myogenin gene. Mol. Cell Biol., 30, 3805-3815.
    • (2010) Mol. Cell Biol. , vol.30 , pp. 3805-3815
    • Palacios, D.1    Summerbell, D.2    Rigby, P.W.3    Boyes, J.4
  • 15
    • 0026653420 scopus 로고
    • The essentials of DNA methylation
    • Bird, A. (1992) The essentials of DNA methylation. Cell, 70, 5-8.
    • (1992) Cell , vol.70 , pp. 5-8
    • Bird, A.1
  • 16
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • Weber, M., Hellmann, I., Stadler, M.B., Ramos, L., Pääbo, S., Rebhan, M. and Schübeler, D. (2007) Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet., 39, 457-466.
    • (2007) Nat. Genet. , vol.39 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Pääbo, S.5    Rebhan, M.6    Schübeler, D.7
  • 17
    • 79960920870 scopus 로고    scopus 로고
    • Expression and functional roles of angiopoietin-2 in skeletal muscles
    • Mofarrahi, M. and Hussain, S.N. (2011) Expression and functional roles of angiopoietin-2 in skeletal muscles. PLoS One, 6, e22882.
    • (2011) PLoS One , vol.6 , pp. e22882
    • Mofarrahi, M.1    Hussain, S.N.2
  • 18
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription
    • Deaton, A.M. and Bird, A. (2011) CpG islands and the regulation of transcription. Genes Dev., 25, 1010-1022.
    • (2011) Genes Dev. , vol.25 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 20
    • 0026765031 scopus 로고
    • Overexpression of Id protein inhibits the muscle differentiation program: in vivo association of Id with E2A proteins
    • Jen, Y., Weintraub, H. and Benezra, R. (1992) Overexpression of Id protein inhibits the muscle differentiation program: in vivo association of Id with E2A proteins. Genes Dev., 6, 1466-1479.
    • (1992) Genes Dev. , vol.6 , pp. 1466-1479
    • Jen, Y.1    Weintraub, H.2    Benezra, R.3
  • 21
    • 0025238437 scopus 로고
    • The protein Id: a negative regulator of helix-loop-helix DNA binding proteins
    • Benezra, R., Davis, R.L., Lockshon, D., Turner, D.L. and Weintraub, H. (1990) The protein Id: a negative regulator of helix-loop-helix DNA binding proteins. Cell, 61, 49-59.
    • (1990) Cell , vol.61 , pp. 49-59
    • Benezra, R.1    Davis, R.L.2    Lockshon, D.3    Turner, D.L.4    Weintraub, H.5
  • 22
    • 0030754089 scopus 로고    scopus 로고
    • Differential interactions of Id proteins with basic-helix-loop-helix transcription factors
    • Langlands, K., Yin, X., Anand, G. and Prochownik, E.V. (1997) Differential interactions of Id proteins with basic-helix-loop-helix transcription factors. J. Biol. Chem., 272, 19785-19793.
    • (1997) J. Biol. Chem. , vol.272 , pp. 19785-19793
    • Langlands, K.1    Yin, X.2    Anand, G.3    Prochownik, E.V.4
  • 24
    • 0028106737 scopus 로고
    • Dependence of transcriptional repression on CpG methylation density
    • Hsieh, C.L. (1994) Dependence of transcriptional repression on CpG methylation density. Mol. Cell Biol., 14, 5487-5494.
    • (1994) Mol. Cell Biol. , vol.14 , pp. 5487-5494
    • Hsieh, C.L.1
  • 25
    • 0035873225 scopus 로고    scopus 로고
    • Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription
    • Fuks, F., Burgers, W.A., Godin, N., Kasai, M. and Kouzarides, T. (2001) Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription. EMBO J., 20, 2536-2544.
    • (2001) EMBO J. , vol.20 , pp. 2536-2544
    • Fuks, F.1    Burgers, W.A.2    Godin, N.3    Kasai, M.4    Kouzarides, T.5
  • 27
    • 80555155557 scopus 로고    scopus 로고
    • The methyl-CpG-binding protein CIBZ suppresses myogenic differentiation by directly inhibiting myogenin expression
    • Oikawa, Y., Omori, R., Nishii, T., Ishida, Y., Kawaichi, M. and Matsuda, E. (2011) The methyl-CpG-binding protein CIBZ suppresses myogenic differentiation by directly inhibiting myogenin expression. Cell Res., 21, 1578-1590.
    • (2011) Cell Res. , vol.21 , pp. 1578-1590
    • Oikawa, Y.1    Omori, R.2    Nishii, T.3    Ishida, Y.4    Kawaichi, M.5    Matsuda, E.6
  • 30
    • 84878425943 scopus 로고    scopus 로고
    • TET proteins: on the frenetic hunt for new cytosine modifications
    • Delatte, B. and Fuks, F. (2013) TET proteins: on the frenetic hunt for new cytosine modifications. Brief Funct. Genomics., 12, 191-204.
    • (2013) Brief Funct. Genomics. , vol.12 , pp. 191-204
    • Delatte, B.1    Fuks, F.2
  • 31
    • 84901811688 scopus 로고    scopus 로고
    • Playing TETris with DNA modifications
    • Delatte, B., Deplus, R. and Fuks, F. (2014) Playing TETris with DNA modifications. EMBO J., 33, 1198-1211.
    • (2014) EMBO J. , vol.33 , pp. 1198-1211
    • Delatte, B.1    Deplus, R.2    Fuks, F.3
  • 33
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D.W., Sherman, B.T. and Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.