-
1
-
-
0039454340
-
Recognition and estimation of 5-methylcytosine in nucleic acids
-
.Wyatt GR. Recognition and estimation of 5-methylcytosine in nucleic acids. Biochem. J. 48(5), 581-584 (1951).
-
(1951)
Biochem. J.
, vol.48
, Issue.5
, pp. 581-584
-
-
Wyatt, G.R.1
-
2
-
-
0017841507
-
Use of restriction enzymes to study eukaryotic DNA methylation: I. The methylation pattern in ribosomal DNA from Xenopus laevis
-
Bird AP, Southern EM. Use of restriction enzymes to study eukaryotic DNA methylation: I. The methylation pattern in ribosomal DNA from Xenopus laevis. J. Mol. Biol. 118(1), 27-47 (1978). (Pubitemid 8271371)
-
(1978)
Journal of Molecular Biology
, vol.118
, Issue.1
, pp. 27-47
-
-
Bird, A.P.1
Southern, E.M.2
-
3
-
-
0018796637
-
Methylation of mosquito DNA. Biochim. Biophys
-
Adams RL, McKay EL, Craig LM, Burdon RH. Methylation of mosquito DNA. Biochim. Biophys. Acta 563(1), 72-81 (1979).
-
(1979)
Acta
, vol.563
, Issue.1
, pp. 72-81
-
-
Adams, R.L.1
McKay, E.L.2
Craig, L.M.3
Burdon, R.H.4
-
4
-
-
0018418293
-
Absence of cytosine methylation at C-C-G-G and G-C-G-C sites in the rDNA coding regions and intervening sequences of Drosophila and the rDNA of other higher insects
-
Rae PM, Steele RE. Absence of cytosine methylation at C-C-G-G and G-C-G-C sites in the rDNA coding regions and intervening sequences of Drosophila and the rDNA of other insects. Nucleic Acids Res. 6(9), 2987-2995 (1979). (Pubitemid 9222557)
-
(1979)
Nucleic Acids Research
, vol.6
, Issue.9
, pp. 2987-2995
-
-
Rae, P.M.M.1
Steele, R.E.2
-
5
-
-
0019322243
-
Variable patterns of total DNA and rDNA methylation in animals
-
Bird AP, Taggart MH. Variable patterns of total DNA and rDNA methylation in animals. Nucleic Acids Res. 8(7), 1485-1497 (1980).
-
(1980)
Nucleic Acids Res.
, vol.8
, Issue.7
, pp. 1485-1497
-
-
Bird, A.P.1
Taggart, M.H.2
-
6
-
-
0019322245
-
DNA methylation and the frequency of CpG in animal DNA
-
Bird AP. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res. 8(7), 1499-1504 (1980).
-
(1980)
Nucleic Acids Res.
, vol.8
, Issue.7
, pp. 1499-1504
-
-
Bird, A.P.1
-
8
-
-
0022000776
-
A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA
-
Bird A, Taggart M, Frommer M, Miller OJ, Macleod D. A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA. Cell 40(1), 91-99 (1985). (Pubitemid 15169310)
-
(1985)
Cell
, vol.40
, Issue.1
, pp. 91-99
-
-
Bird, A.1
Taggart, M.2
Frommer, M.3
-
9
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
Bird AP. CpG-rich islands and the function of DNA methylation. Nature 321(6067), 209-213 (1986). (Pubitemid 16016411)
-
(1986)
Nature
, vol.321
, Issue.6067
, pp. 209-213
-
-
Bird, A.P.1
-
10
-
-
0024673303
-
CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
-
Iguchi-Ariga SM, Schaffner W. CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev. 3(5), 612-619 (1989).
-
(1989)
Genes Dev.
, vol.3
, Issue.5
, pp. 612-619
-
-
Iguchi-Ariga, S.M.1
Schaffner, W.2
-
11
-
-
0027535235
-
Effects of DNA methylation on DNA-binding proteins and gene expression
-
DOI 10.1016/0959-437X(93)90027-M
-
Tate PH, Bird AP. Effects of DNA methylation on DNA-binding proteins and gene expression. Curr. Opin. Genet. Dev. 3(2), 226-231 (1993). (Pubitemid 23108662)
-
(1993)
Current Opinion in Genetics and Development
, vol.3
, Issue.2
, pp. 226-231
-
-
Tate, P.H.1
Bird, A.P.2
-
12
-
-
40549111302
-
All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues
-
Rozenberg JM, Shlyakhtenko A, Glass K et al. All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues. BMC Genomics 9, 67 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 67
-
-
Rozenberg, J.M.1
Shlyakhtenko, A.2
Glass, K.3
-
13
-
-
78650584064
-
CpG methylation of half-CRE sequences creates C/EBPa binding sites that activate some tissue-specific genes
-
Rishi V, Bhattacharya P, Chatterjee R et al. CpG methylation of half-CRE sequences creates C/EBPa binding sites that activate some tissue-specific genes. Proc. Natl Acad. Sci. USA 107(47), 20311-20316 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, Issue.47
, pp. 20311-20316
-
-
Rishi, V.1
Bhattacharya, P.2
Chatterjee, R.3
-
14
-
-
0019957879
-
Estrogen induces a demethylation at the 5' end region of the chicken vitellogenin gene
-
DOI 10.1073/pnas.79.14.4252
-
Wilks AF, Cozens PJ, Mattaj IW, Jost JP. Estrogen induces a demethylation at the 5́ end region of the chicken vitellogenin gene. Proc. Natl Acad. Sci. USA 79(14), 4252-4255 (1982). (Pubitemid 12045772)
-
(1982)
Proceedings of the National Academy of Sciences of the United States of America
, vol.79
, Issue.14
, pp. 4252-4255
-
-
Wilks, A.F.1
Cozens, P.J.2
Mattaj, I.W.3
Jost, J.P.4
-
15
-
-
0020637982
-
Is hypomethylation linked to activation of δ-crystallin genes during lens development?
-
Grainger RM, Hazard-Leonards RM, Samaha F, Hougan LM, Lesk MR, Thomsen GH. Is hypomethylation linked to activation of δ-crystallin genes during lens development? Nature 306(5938), 88-91 (1983). (Pubitemid 13022778)
-
(1983)
Nature
, vol.306
, Issue.5938
, pp. 88-91
-
-
Grainger, R.M.1
Hazard Leonards, R.M.2
Samaha, F.3
-
16
-
-
0021092832
-
Developmental changes in the methylation of the rat albumin and a-fetoprotein genes
-
Kunnath L, Locker J. Developmental changes in the methylation of the rat albumin and a-fetoprotein genes. EMBO J. 2(3), 317-324 (1983).
-
(1983)
EMBO J.
, vol.2
, Issue.3
, pp. 317-324
-
-
Kunnath, L.1
Locker, J.2
-
17
-
-
0024342686
-
Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs
-
DOI 10.1016/0092-8674(89)90430-3
-
Meehan RR, Lewis JD, McKay S, Kleiner EL, Bird AP. Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs. Cell 58(3), 499-507 (1989). (Pubitemid 19203534)
-
(1989)
Cell
, vol.58
, Issue.3
, pp. 499-507
-
-
Meehan, R.R.1
Lewis, J.D.2
McKay, S.3
Kleiner, E.L.4
Bird, A.P.5
-
18
-
-
0026747761
-
Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA
-
Lewis JD, Meehan RR, Henzel WJ et al. Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA. Cell 69(6), 905-914 (1992).
-
(1992)
Cell
, vol.69
, Issue.6
, pp. 905-914
-
-
Lewis, J.D.1
Meehan, R.R.2
Henzel, W.J.3
-
19
-
-
0031837109
-
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
-
DOI 10.1038/561
-
Jones PL, Veenstra GJ, Wade PA et al. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nat. Genet. 19(2), 187-191 (1998). (Pubitemid 28248804)
-
(1998)
Nature Genetics
, vol.19
, Issue.2
, pp. 187-191
-
-
Jones, P.L.1
Veenstra, G.J.C.2
Wade, P.A.3
Vermaak, D.4
Kass, S.U.5
Landsberger, N.6
Strouboulis, J.7
Wolffe, A.P.8
-
20
-
-
80053144962
-
A decade of exploring the cancer epigenome -biological and translational implications
-
Baylin SB, Jones PA. A decade of exploring the cancer epigenome -biological and translational implications. Nat. Rev. Cancer 11(10), 726-734 (2011).
-
(2011)
Nat. Rev. Cancer
, vol.11
, Issue.10
, pp. 726-734
-
-
Baylin, S.B.1
Jones, P.A.2
-
21
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer M, McDonald LE, Millar DS et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA 89(5), 1827-1831 (1992).
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, Issue.5
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
-
22
-
-
0027960055
-
Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island
-
MacLeod D, Charlton J, Mullins J, Bird AP. Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island. Genes Dev. 8(19), 2282-2292 (1994). (Pubitemid 24314290)
-
(1994)
Genes and Development
, vol.8
, Issue.19
, pp. 2282-2292
-
-
Macleod, D.1
Charlton, J.2
Mullins, J.3
Bird, A.P.4
-
23
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
-
DOI 10.1038/nbt1414, PII NBT1414
-
Down TA, Rakyan VK, Turner DJ et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat. Biotechnol. 26(7), 779-785 (2008). (Pubitemid 351961453)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
Graf, S.7
Johnson, N.8
Herrero, J.9
Tomazou, E.M.10
Thorne, N.P.11
Backdahl, L.12
Herberth, M.13
Howe, K.L.14
Jackson, D.K.15
Miretti, M.M.16
Marioni, J.C.17
Birney, E.18
Hubbard, T.J.P.19
Durbin, R.20
Tavare, S.21
Beck, S.22
more..
-
24
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball MP, Li JB, Gao Y et al. Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotechnol. 27(4), 361-368 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.4
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
-
25
-
-
84858146301
-
Methylome analysis using MeDIP-seq with low DNA concentrations
-
Taiwo O, Wilson GA, Morris T et al. Methylome analysis using MeDIP-seq with low DNA concentrations. Nat. Protoc. 7(4), 617-636 (2012).
-
(2012)
Nat. Protoc.
, vol.7
, Issue.4
, pp. 617-636
-
-
Taiwo, O.1
Wilson, G.A.2
Morris, T.3
-
26
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, O'Malley RC, Tonti-Filippini J et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133(3), 523-536 (2008).
-
(2008)
Cell
, vol.133
, Issue.3
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
-
27
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R, Pelizzola M, Dowen RH et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462(7271), 315-322 (2009).
-
(2009)
Nature
, vol.462
, Issue.7271
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
-
28
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
Lister R, Pelizzola M, Kida YS et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471(7336), 68-73 (2011).
-
(2011)
Nature
, vol.471
, Issue.7336
, pp. 68-73
-
-
Lister, R.1
Pelizzola, M.2
Kida, Y.S.3
-
29
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A, Mikkelsen TS, Gu H et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454(7205), 766-770 (2008).
-
(2008)
Nature
, vol.454
, Issue.7205
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
-
30
-
-
33751505540
-
DNA methylation profiling of human chromosomes 6, 20 and 22
-
DOI 10.1038/ng1909, PII NG1909
-
Eckhardt F, Lewin J, Cortese R et al. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat. Genet. 38(12), 1378-1385 (2006). (Pubitemid 44837559)
-
(2006)
Nature Genetics
, vol.38
, Issue.12
, pp. 1378-1385
-
-
Eckhardt, F.1
Lewin, J.2
Cortese, R.3
Rakyan, V.K.4
Attwood, J.5
Burger, M.6
Burton, J.7
Cox, T.V.8
Davies, R.9
Down, T.A.10
Haefliger, C.11
Horton, R.12
Howe, K.13
Jackson, D.K.14
Kunde, J.15
Koenig, C.16
Liddle, J.17
Niblett, D.18
Otto, T.19
Pettett, R.20
Seemann, S.21
Thompson, C.22
West, T.23
Rogers, J.24
Olek, A.25
Berlin, K.26
Beck, S.27
more..
-
31
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
DOI 10.1038/ng1990, PII NG1990
-
Weber M, Hellmann I, Stadler MB et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet. 39(4), 457-466 (2007). (Pubitemid 46514772)
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Paabo, S.5
Rebhan, M.6
Schubeler, D.7
-
32
-
-
79960927422
-
Increased methylation variation in epigenetic domains across cancer types
-
Hansen KD, Timp W, Bravo HC et al. Increased methylation variation in epigenetic domains across cancer types. Nat. Genet. 43(8), 768-775 (2011).
-
(2011)
Nat. Genet.
, vol.43
, Issue.8
, pp. 768-775
-
-
Hansen, K.D.1
Timp, W.2
Bravo, H.C.3
-
33
-
-
0036782878
-
Evidence for local control of gene expression in the epidermal differentiation complex
-
DOI 10.1034/j.1600-0625.2002.110503.x
-
Elder JT, Zhao X. Evidence for local control of gene expression in the epidermal differentiation complex. Exp. Dermatol. 11(5), 406-412 (2002). (Pubitemid 36934675)
-
(2002)
Experimental Dermatology
, vol.11
, Issue.5
, pp. 406-412
-
-
Elder, J.T.1
Zhao, X.2
-
34
-
-
84869500635
-
Impact of DNA methylation on trophoblast function
-
Serman L, Dodig D. Impact of DNA methylation on trophoblast function. Clin. Epigenetics 3, 7 (2011).
-
(2011)
Clin. Epigenetics
, vol.3
, Issue.7
-
-
Serman, L.1
Dodig, D.2
-
35
-
-
84867882153
-
Epigenetic regulation of gene expression in keratinocytes
-
Botchkarev VA, Gdula MR, Mardaryev AN, Sharov A A, Fessing MY. Epigenetic regulation of gene expression in keratinocytes. J. Invest. Dermatol. 132(11), 2505-2521 (2012).
-
(2012)
J. Invest. Dermatol.
, vol.132
, Issue.11
, pp. 2505-2521
-
-
Botchkarev, V.A.1
Gdula, M.R.2
Mardaryev, A.N.3
Sharov, A.A.4
Fessing, M.Y.5
-
36
-
-
84860216630
-
Microbial Exposure during Early Life Has Persistent Effects on Natural Killer T Cell Function
-
Olszak T, An D, Zeissig S et al. Microbial exposure during early life has persistent effects on natural killer T cell function. Science 336(6080), 489-493 (2012).
-
(2012)
Science
, vol.336
, Issue.6080
, pp. 489-493
-
-
Olszak, T.1
An, D.2
Zeissig, S.3
-
37
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev. 25(10), 1010-1022 (2011).
-
(2011)
Genes Dev.
, vol.25
, Issue.10
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
38
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
DOI 10.1101/gad.947102
-
Bird A. DNA methylation patterns and epigenetic memory. Genes Dev. 16(1), 6-21 (2002). (Pubitemid 34049633)
-
(2002)
Genes and Development
, vol.16
, Issue.1
, pp. 6-21
-
-
Bird, A.1
-
41
-
-
63849094762
-
HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination
-
Sigurdsson MI, Smith AV, Bjornsson HT, Jonsson JJ. HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination. Genome Res. 19(4), 581-589 (2009).
-
(2009)
Genome Res.
, vol.19
, Issue.4
, pp. 581-589
-
-
Sigurdsson, M.I.1
Smith, A.V.2
Bjornsson, H.T.3
Jonsson, J.J.4
-
42
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
Laurent L, Wong E, Li G et al. Dynamic changes in the human methylome during differentiation. Genome Res. 20(3), 320-331 (2010).
-
(2010)
Genome Res.
, vol.20
, Issue.3
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
-
43
-
-
0035839126
-
Epigenetic reprogramming in mammalian development
-
DOI 10.1126/science.1063443
-
Reik W, Dean W, Walter J. Epigenetic reprogramming in mammalian development. Science 293(5532), 1089-1093 (2001). (Pubitemid 32758081)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1089-1093
-
-
Reik, W.1
Dean, W.2
Walter, J.3
-
44
-
-
0032528255
-
Chromosome methylation patterns during mammalian preimplantation development
-
Rougier N, Bourc'his D, Gomes DM et al. Chromosome methylation patterns during mammalian preimplantation development. Genes Dev. 12(14), 2108-2113 (1998). (Pubitemid 28348034)
-
(1998)
Genes and Development
, vol.12
, Issue.14
, pp. 2108-2113
-
-
Rougier, N.1
Bourc'his, D.2
Molina Gomes, D.3
Niveleau, A.4
Plachot, M.5
Paldi, A.6
Viegas-Pequignot, E.7
-
45
-
-
0034598784
-
Demethylation of the zygotic paternal genome
-
Mayer W, Niveleau A, Walter J, Fundele R, Haaf T. Demethylation of the zygotic paternal genome. Nature 403(6769), 501-502 (2000). (Pubitemid 30082186)
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 501-502
-
-
Mayer, W.1
Niveleau, A.2
Walter, J.3
Fundele, R.4
Haaf, T.5
-
46
-
-
0034176639
-
Active demethylation of the paternal genome in the mouse zygote
-
DOI 10.1016/S0960-9822(00)00448-6
-
Oswald J, Engemann S, Lane N et al. Active demethylation of the paternal genome in the mouse zygote. Curr. Biol. 10(8), 475-478 (2000). (Pubitemid 30247337)
-
(2000)
Current Biology
, vol.10
, Issue.8
, pp. 475-478
-
-
Oswald, J.1
Engemann, S.2
Lane, N.3
Mayer, W.4
Olek, A.5
Fundele, R.6
Dean, W.7
Reik, W.8
Walter, J.9
-
47
-
-
0027096740
-
Properties and localization of DNA methyltransferase in preimplantation mouse embryos: Implications for genomic imprinting
-
Carlson LL, Page AW, Bestor TH. Properties and localization of DNA methyltransferase in preimplantation mouse embryos: implications for genomic imprinting. Genes Dev. 6(12B), 2536-2541 (1992). (Pubitemid 23052882)
-
(1992)
Genes and Development
, vol.6
, Issue.12
, pp. 2536-2541
-
-
Carlson, L.L.1
Page, A.W.2
Bestor, T.H.3
-
48
-
-
0033523760
-
DNA methyltransferase is actively retained in the cytoplasm during early development
-
DOI 10.1083/jcb.147.1.25
-
Cardoso MC, Leonhardt H. DNA methyltransferase is actively retained in the cytoplasm during early development. J. Cell Biol. 147(1), 25-32 (1999). (Pubitemid 30211793)
-
(1999)
Journal of Cell Biology
, vol.147
, Issue.1
, pp. 25-32
-
-
Cardoso, M.C.1
Leonhardt, H.2
-
49
-
-
42249094716
-
Chromatin dynamics during epigenetic reprogramming in the mouse germ line
-
DOI 10.1038/nature06714, PII NATURE06714
-
Hajkova P, Ancelin K, Waldmann T et al. Chromatin dynamics during epigenetic reprogramming in the mouse germ line. Nature 452(7189), 877-881 (2008). (Pubitemid 351550855)
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 877-881
-
-
Hajkova, P.1
Ancelin, K.2
Waldmann, T.3
Lacoste, N.4
Lange, U.C.5
Cesari, F.6
Lee, C.7
Almouzni, G.8
Schneider, R.9
Surani, M.A.10
-
50
-
-
45349086923
-
Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes
-
Farthing CR, Ficz G, Ng RK et al. Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes. PLoS Genet. 4(6), e1000116 (2008).
-
(2008)
PLoS Genet.
, vol.4
, Issue.6
-
-
Farthing, C.R.1
Ficz, G.2
Ng, R.K.3
-
51
-
-
66149147557
-
Developmental programming of CpG island methylation profiles in the human genome
-
Straussman R, Nejman D, Roberts D et al. Developmental programming of CpG island methylation profiles in the human genome. Nat. Struct. Mol. Biol. 16(5), 564-571 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, Issue.5
, pp. 564-571
-
-
Straussman, R.1
Nejman, D.2
Roberts, D.3
-
52
-
-
55549145072
-
De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes
-
Epsztejn-Litman S, Feldman N, Abu-Remaileh M et al. De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes. Nat. Struct. Mol. Biol. 15(11), 1176-1183 (2008).
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, Issue.11
, pp. 1176-1183
-
-
Epsztejn-Litman, S.1
Feldman, N.2
Abu-Remaileh, M.3
-
53
-
-
0035656305
-
DNA Methylation Is a Critical Cell-Intrinsic Determinant of Astrocyte Differentiation in the Fetal Brain
-
DOI 10.1016/S1534-5807(01)00101-0, PII S1534580701001010
-
Takizawa T, Nakashima K, Namihira M et al. DNA methylation is a critical cell-intrinsic determinant of astrocyte differentiation in the fetal brain. Dev. Cell 1(6), 749-758 (2001). (Pubitemid 33586130)
-
(2001)
Developmental Cell
, vol.1
, Issue.6
, pp. 749-758
-
-
Takizawa, T.1
Nakashima, K.2
Namihira, M.3
Ochiai, W.4
Uemura, A.5
Yanagisawa, M.6
Fujita, N.7
Nakao, M.8
Taga, T.9
-
54
-
-
33745270104
-
Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b
-
DOI 10.1111/j.1365-2443.2006.00984.x
-
Tsumura A, Hayakawa T, Kumaki Y et al. Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b. Genes Cells 11(7), 805-814 (2006). (Pubitemid 43923351)
-
(2006)
Genes to Cells
, vol.11
, Issue.7
, pp. 805-814
-
-
Tsumura, A.1
Hayakawa, T.2
Kumaki, Y.3
Takebayashi, S.-I.4
Sakaue, M.5
Matsuoka, C.6
Shimotohno, K.7
Ishikawa, F.8
Li, E.9
Ueda, H.R.10
Nakayama, J.-I.11
Okano, M.12
-
55
-
-
75749104729
-
DNMT1 maintains progenitor function in self-renewing somatic tissue
-
Sen GL, Reuter JA, Webster DE, Zhu L, Khavari PA. DNMT1 maintains progenitor function in self-renewing somatic tissue. Nature 463(7280), 563-567 (2010).
-
(2010)
Nature
, vol.463
, Issue.7280
, pp. 563-567
-
-
Sen, G.L.1
Reuter, J.A.2
Webster, D.E.3
Zhu, L.4
Khavari, P.A.5
-
56
-
-
73349104113
-
Active DNA demethylation mediated by DNA glycosylases
-
Zhu JK. Active DNA demethylation mediated by DNA glycosylases. Annu. Rev. Genet. 43, 143-166 (2009).
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 143-166
-
-
Zhu, J.K.1
-
57
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466(7310), 1129-1133 (2010).
-
(2010)
Nature
, vol.466
, Issue.7310
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
58
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q et al. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333(6047), 1300-1303 (2011).
-
(2011)
Science
, vol.333
, Issue.6047
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
-
59
-
-
79954457998
-
Genome-wide analysis of 5 hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
-
Wu H, D'Alessio AC, Ito S et al. Genome-wide analysis of 5 ydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells. Genes Dev. 25(7), 679-684 (2011).
-
(2011)
Genes Dev.
, vol.25
, Issue.7
, pp. 679-684
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
-
60
-
-
79959937861
-
Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
-
Cortellino S, Xu J, Sannai M et al. Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 146(1), 67-79 (2011).
-
(2011)
Cell
, vol.146
, Issue.1
, pp. 67-79
-
-
Cortellino, S.1
Xu, J.2
Sannai, M.3
-
61
-
-
0018776724
-
5-Methylcytosine content of nuclear DNA during chemical hepatocarcinogenesis and in carcinomas which result
-
DOI 10.1016/0006-291X(79)92015-1
-
Lapeyre JN, Becker FF. 5methylcytosine content of nuclear DNA during chemical hepatocarcinogenesis and in carcinomas which result. Biochem. Biophys. Res. Commun. 87(3), 698-705 (1979). (Pubitemid 9178100)
-
(1979)
Biochemical and Biophysical Research Communications
, vol.87
, Issue.3
, pp. 698-705
-
-
Lapeyre, J.N.1
Becker, F.F.2
-
62
-
-
0020699979
-
Hypomethylation distinguishes genes of some human cancers from their normal counterparts
-
DOI 10.1038/301089a0
-
Feinberg AP, Vogelstein B. Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 301(5895), 89-92 (1983). (Pubitemid 13154475)
-
(1983)
Nature
, vol.301
, Issue.5895
, pp. 89-92
-
-
Feinberg, A.P.1
Vogelstein, B.2
-
63
-
-
29244469466
-
The epigenetic progenitor origin of human cancer
-
DOI 10.1038/nrg1748
-
Feinberg AP, Ohlsson R, Henikoff S. The epigenetic progenitor origin of human cancer. Nat. Rev. Genet. 7(1), 21-33 (2006). (Pubitemid 41828945)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.1
, pp. 21-33
-
-
Feinberg, A.P.1
Ohlsson, R.2
Henikoff, S.3
-
64
-
-
79952384705
-
Cancer epigenetics reaches mainstream oncology
-
Rodriguez-Paredes M, Esteller M. Cancer epigenetics reaches mainstream oncology. Nat. Med. 17(3), 330-339 (2011).
-
(2011)
Nat. Med.
, vol.17
, Issue.3
, pp. 330-339
-
-
Rodriguez-Paredes, M.1
Esteller, M.2
-
65
-
-
27944504788
-
Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia
-
DOI 10.1038/sj.onc.1208866, PII 1208866
-
Roman-Gomez J, Jimenez-Velasco A, Agirre X et al. Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia. Oncogene 24(48), 7213-7223 (2005). (Pubitemid 41679283)
-
(2005)
Oncogene
, vol.24
, Issue.48
, pp. 7213-7223
-
-
Roman-Gomez, J.1
Jimenez-Velasco, A.2
Agirre, X.3
Cervantes, F.4
Sanchez, J.5
Garate, L.6
Barrios, M.7
Castillejo, J.A.8
Navarro, G.9
Colomer, D.10
Prosper, F.11
Heiniger, A.12
Torres, A.13
-
66
-
-
0037436509
-
Loss of IGF2 imprinting: A potential marker of colorectal cancer risk
-
DOI 10.1126/science.1080902
-
Cui H, Cruz-Correa M, Giardiello FM et al. Loss of IGF2 imprinting: a potential marker of colorectal cancer risk. Science 299(5613), 1753-1755 (2003). (Pubitemid 36337205)
-
(2003)
Science
, vol.299
, Issue.5613
, pp. 1753-1755
-
-
Cui, H.1
Cruz-Correa, M.2
Giardiello, F.M.3
Hutcheon, D.F.4
Kafonek, D.R.5
Brandenburg, S.6
Wu, Y.7
He, X.8
Powe, N.R.9
Feinberg, A.P.10
-
67
-
-
0033118754
-
Imprinting of a genomic domain of 11p15 and loss of imprinting in cancer: An introduction
-
Feinberg AP. Imprinting of a genomic domain of 11p15 and loss of imprinting in cancer: an introduction. Cancer Res. 59(Suppl. 7), S1743-S1746 (1999).
-
(1999)
Cancer Res.
, vol.59
, Issue.SUPPL. 7
-
-
Feinberg, A.P.1
-
68
-
-
0027285258
-
Relaxation of insulin-like growth factor II gene imprinting implicated in Wilms' tumour
-
DOI 10.1038/362749a0
-
Ogawa O, Eccles MR, Szeto J et al. Relaxation of insulin-like growth factor II gene imprinting implicated in Wilms' tumour. Nature 362(6422), 749-751 (1993). (Pubitemid 23125978)
-
(1993)
Nature
, vol.362
, Issue.6422
, pp. 749-751
-
-
Ogawa, O.1
Eccles, M.R.2
Szeto, J.3
McNoe, L.A.4
Yun, K.5
Maw, M.A.6
Smith, P.J.7
Reeve, A.E.8
-
69
-
-
29244447111
-
Loss of imprinting of IGF2: A common epigenetic modifier of intestinal tumor risk
-
DOI 10.1158/0008-5472.CAN-05-2959
-
Kaneda A, Feinberg AP. Loss of imprinting of IGF2: a common epigenetic modifier of intestinal tumor risk. Cancer Res. 65(24), 11236-11240 (2005). (Pubitemid 41821674)
-
(2005)
Cancer Research
, vol.65
, Issue.24
, pp. 11236-11240
-
-
Kaneda, A.1
Feinberg, A.P.2
-
70
-
-
66149123748
-
The nuclear DNA base 5 hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis S, Heintz N. The nuclear DNA base 5 hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324(5929), 929-930 (2009).
-
(2009)
Science
, vol.324
, Issue.5929
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
71
-
-
66149146320
-
Conversion of 5 methylcytosine to 5 hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y et al. Conversion of 5 methylcytosine to 5 hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324(5929), 930-935 (2009).
-
(2009)
Science
, vol.324
, Issue.5929
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
-
72
-
-
78650175023
-
Impaired hydroxylation of 5 methylcytosine in myeloid cancers with mutant TET2
-
Ko M, Huang Y, Jankowska AM et al. Impaired hydroxylation of 5 methylcytosine in myeloid cancers with mutant TET2. Nature 468(7325), 839-843 (2010).
-
(2010)
Nature
, vol.468
, Issue.7325
, pp. 839-843
-
-
Ko, M.1
Huang, Y.2
Jankowska, A.M.3
-
73
-
-
79961139741
-
Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
-
Dawlaty MM, Ganz K, Powell BE et al. Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development. Cell Stem Cell 9(2), 166-175 (2011).
-
(2011)
Cell Stem Cell
, vol.9
, Issue.2
, pp. 166-175
-
-
Dawlaty, M.M.1
Ganz, K.2
Powell, B.E.3
-
74
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
Gu TP, Guo F, Yang H et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477(7366), 606-610 (2011).
-
(2011)
Nature
, vol.477
, Issue.7366
, pp. 606-610
-
-
Gu, T.P.1
Guo, F.2
Yang, H.3
-
75
-
-
79551587102
-
Tet1 and Tet2 regulate 5 hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
-
Koh KP, Yabuuchi A, Rao S et al. Tet1 and Tet2 regulate 5 hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell 8(2), 200-213 (2011).
-
(2011)
Cell Stem Cell
, vol.8
, Issue.2
, pp. 200-213
-
-
Koh, K.P.1
Yabuuchi, A.2
Rao, S.3
-
76
-
-
79959859654
-
Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells
-
Szulwach KE, Li X, Li Y et al. Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells. PLoS Genet. 7(6), e1002154 (2011).
-
(2011)
PLoS Genet.
, vol.7
, Issue.6
-
-
Szulwach, K.E.1
Li, X.2
Li, Y.3
-
77
-
-
84861990517
-
Base-resolution analysis of 5 hydroxymethylcytosine in the mammalian genome
-
Yu M, Hon GC, Szulwach KE et al. Base-resolution analysis of 5 hydroxymethylcytosine in the mammalian genome. Cell 149(6), 1368-1380 (2012).
-
(2012)
Cell
, vol.149
, Issue.6
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
-
78
-
-
79961023271
-
Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition
-
McDonald OG, Wu H, Timp W, Doi A, Feinberg AP. Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition. Nat. Struct. Mol. Biol. 18(8), 867-874 (2011).
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, Issue.8
, pp. 867-874
-
-
McDonald, O.G.1
Wu, H.2
Timp, W.3
Doi, A.4
Feinberg, A.P.5
-
79
-
-
0033028741
-
Quantifying DNA-protein interactions by double-stranded DNA arrays
-
DOI 10.1038/9878
-
Bulyk ML, Gentalen E, Lockhart DJ, Church GM. Quantifying DNA-protein interactions by double-stranded DNA arrays. Nat. Biotechnol. 17(6), 573-577 (1999). (Pubitemid 29262921)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.6
, pp. 573-577
-
-
Bulyk, M.L.1
Gentalen, E.2
Lockhart, D.J.3
Church, G.M.4
-
80
-
-
84055172799
-
Fabrication of duplex DNA microarrays incorporating methyl-5 cytosine
-
Warren CL, Zhao J, Glass K, Rishi V, Ansari AZ, Vinson C. Fabrication of duplex DNA microarrays incorporating methyl-5 cytosine. Lab Chip 12(2), 376-380 (2012).
-
(2012)
Lab Chip
, vol.12
, Issue.2
, pp. 376-380
-
-
Warren, C.L.1
Zhao, J.2
Glass, K.3
Rishi, V.4
Ansari, A.Z.5
Vinson, C.6
|