-
1
-
-
84892752839
-
Type 1 diabetes
-
Atkinson, M. A., Eisenbarth, G. S., and Michels, A. W. (2014). Type 1 diabetes. Lancet 383, 69-82. doi: 10.1016/S0140-6736(13)60591-7
-
(2014)
Lancet
, vol.383
, pp. 69-82
-
-
Atkinson, M.A.1
Eisenbarth, G.S.2
Michels, A.W.3
-
2
-
-
2442695245
-
What you see may not be what you get: a brief, nontechnical introduction to overfitting in regression-type models
-
Babyak, M. A. (2004). What you see may not be what you get: a brief, nontechnical introduction to overfitting in regression-type models. Psychosom. Med. 66, 411-421. doi: 10.1097/01.psy.0000127692.23278.a9
-
(2004)
Psychosom. Med.
, vol.66
, pp. 411-421
-
-
Babyak, M.A.1
-
3
-
-
0037136537
-
The effect of infections on susceptibility to autoimmune and allergic diseases
-
Bach, J. F. (2002). The effect of infections on susceptibility to autoimmune and allergic diseases. N. Engl. J. Med. 347, 911-920. doi: 10.1056/NEJMra020100
-
(2002)
N. Engl. J. Med.
, vol.347
, pp. 911-920
-
-
Bach, J.F.1
-
4
-
-
67349199566
-
Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes
-
Barrett, J. C., Clayton, D. G., Concannon, P., Akolkar, B., Cooper, J. D., Erlich, H. A., et al. (2009). Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. Nat. Genet. 41, 703-707. doi: 10.1038/ng.381
-
(2009)
Nat. Genet.
, vol.41
, pp. 703-707
-
-
Barrett, J.C.1
Clayton, D.G.2
Concannon, P.3
Akolkar, B.4
Cooper, J.D.5
Erlich, H.A.6
-
5
-
-
33746217511
-
Bacteroides dorei sp
-
Bakir, M. A., Sakamoto, M., Kitahara, M., Matsumoto, M., and Benno, Y. (2006). Bacteroides dorei sp. nov., isolated from human faeces. Int. J. Syst. Evol. 56, 1639-1643. doi: 10.1099/ijs.0.64257-0
-
(2006)
nov., isolated from human faeces. Int. J. Syst. Evol.
, vol.56
, pp. 1639-1643
-
-
Bakir, M.A.1
Sakamoto, M.2
Kitahara, M.3
Matsumoto, M.4
Benno, Y.5
-
6
-
-
85013722564
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
79956078164
-
Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease
-
Bloom, S. M., Bijanki, V. N., Nava, G. M., Sun, L., Malvin, N. P., Donemeyer, D. L., et al. (2011). Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease. Cell Host Microbe 9, 390-403. doi: 10.1016/j.chom.2011.04.009
-
(2011)
Cell Host Microbe
, vol.9
, pp. 390-403
-
-
Bloom, S.M.1
Bijanki, V.N.2
Nava, G.M.3
Sun, L.4
Malvin, N.P.5
Donemeyer, D.L.6
-
8
-
-
0023909518
-
Bacteroides vulgatus outer membrane antigens associated with carrageenan-induced colitis in guinea pigs
-
Breeling, J. L., Onderdonk, A. B., Cisneros, R. L., and Kasper, D. L. (1988). Bacteroides vulgatus outer membrane antigens associated with carrageenan-induced colitis in guinea pigs. Infect. Immun. 56, 1754-1759.
-
(1988)
Infect. Immun.
, vol.56
, pp. 1754-1759
-
-
Breeling, J.L.1
Onderdonk, A.B.2
Cisneros, R.L.3
Kasper, D.L.4
-
9
-
-
84879763980
-
Antianaerobic antimicrobials: spectrum and susceptibility testing
-
Brook, I., Wexler, H. M., and Goldstein, E. J. (2013). Antianaerobic antimicrobials: spectrum and susceptibility testing. Clin. Microbiol. Rev. 26, 526-546. doi: 10.1128/CMR.00086-12
-
(2013)
Clin. Microbiol. Rev.
, vol.26
, pp. 526-546
-
-
Brook, I.1
Wexler, H.M.2
Goldstein, E.J.3
-
10
-
-
80054722148
-
Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes
-
Brown, C. T., Davis-Richardson, A. G., Giongo, A., Gano, K. A., Crabb, D. B., Mukherjee, N., et al. (2011). Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS ONE 6:e25792. doi: 10.1371/journal.pone.0025792
-
(2011)
PLoS ONE
, vol.6
-
-
Brown, C.T.1
Davis-Richardson, A.G.2
Giongo, A.3
Gano, K.A.4
Crabb, D.B.5
Mukherjee, N.6
-
11
-
-
33746750046
-
Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat
-
Brugman, S., Klatter, F. A., Visser, J. T., Wildeboer-Veloo, A. C., Harmsen, H. J., Rozing, J., et al. (2006). Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes? Diabetologia 49, 2105-2108. doi: 10.1007/s00125-006-0334-0
-
(2006)
Is the gut flora involved in the development of type 1 diabetes? Diabetologia
, vol.49
, pp. 2105-2108
-
-
Brugman, S.1
Klatter, F.A.2
Visser, J.T.3
Wildeboer-Veloo, A.C.4
Harmsen, H.J.5
Rozing, J.6
-
12
-
-
84865336911
-
The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery
-
Cabrera-Rubio, R., Collado, M. C., Laitinen, K., Salminen, S., Isolauri, E., and Mira, A. (2012). The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery. Am. J. Clin. Nutr. 96, 544-551. doi: 10.3945/ajcn.112.037382
-
(2012)
Am. J. Clin. Nutr.
, vol.96
, pp. 544-551
-
-
Cabrera-Rubio, R.1
Collado, M.C.2
Laitinen, K.3
Salminen, S.4
Isolauri, E.5
Mira, A.6
-
13
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336. doi: 10.1038/nmeth.f.303
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
14
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C. A., Turnbaugh, P. J., et al. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc. Natl. Acad. Sci. U.S.A. 108, 4516-4522. doi: 10.1073/pnas.1000080107
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
-
15
-
-
84872592295
-
Fecal microbiota composition differs between children with ß-cell autoimmunity and those without
-
de Goffau, M. C., Luopajarvi, K., Knip, M., Ilonen, J., Ruohtula, T., Harkonen, T., et al. (2013). Fecal microbiota composition differs between children with ß-cell autoimmunity and those without. Diabetes 62, 1238-1244. doi: 10.2337/db12-0526
-
(2013)
Diabetes
, vol.62
, pp. 1238-1244
-
-
de Goffau, M.C.1
Luopajarvi, K.2
Knip, M.3
Ilonen, J.4
Ruohtula, T.5
Harkonen, T.6
-
16
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072. doi: 10.1128/AEM.03006-05
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
17
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen, L., Huse, S., Sogin, M. L., and Relman, D. A. (2008). The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 6:e280. doi: 10.1371/journal.pbio.0060280
-
(2008)
PLoS Biol.
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
18
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., et al. (2010). Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc. Natl. Acad. Sci. U.S.A. 107, 11971-11975. doi: 10.1073/pnas.1002601107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
-
19
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
20
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 28, 2460-2461. doi: 10.1093/bioinformatics/btq461
-
(2010)
Bioinformatics
, vol.28
, pp. 2460-2461
-
-
Edgar, R.C.1
-
21
-
-
84901330157
-
Compromised gut microbiota networks in children with anti-islet cell autoimmunity
-
Endesfelder, D., zu Castell, W., Ardissone, A., Davis-Richardson, A. G., Achenbach, P., Hagen, M., et al. (2014). Compromised gut microbiota networks in children with anti-islet cell autoimmunity. Diabetes 63, 2006-2014. doi: 10.2337/db13-1676
-
(2014)
Diabetes
, vol.63
, pp. 2006-2014
-
-
Endesfelder, D.1
Zu Castell, W.2
Ardissone, A.3
Davis-Richardson, A.G.4
Achenbach, P.5
Hagen, M.6
-
22
-
-
84860666031
-
Characterization of the relative abundance of the citrus pathogen C
-
Fagen, J. R., Giongo, A., Brown, C. T., Davis-Richardson, A. G., Gano, K. A., and Triplett, E. W. (2012). Characterization of the relative abundance of the citrus pathogen Ca. Liberibacter asiaticus in the microbiome of its insect vector, Diaphorina citri, using high throughput 16S rRNA sequencing. Open Microbiol. J. 6, 29-33. doi: 10.2174/1874285801206010029
-
(2012)
Liberibacter asiaticus in the microbiome of its insect vector, Diaphorina citri, using high throughput 16S rRNA sequencing. Open Microbiol. J.
, vol.6
, pp. 29-33
-
-
Fagen, J.R.1
Giongo, A.2
Brown, C.T.3
Davis-Richardson, A.G.4
Gano, K.A.5
Triplett, E.W.6
-
23
-
-
0035992601
-
Quantitative analysis of bacterial DNA from Mycobacteria spp., Bacteroides vulgatus, and Escherichia coli in tissue samples from patients with inflammatory bowel diseases
-
Fujita, H., Eishi, Y., Ishige, I., Saitoh, K., Takizawa, T., Arima, T., et al. (2002). Quantitative analysis of bacterial DNA from Mycobacteria spp., Bacteroides vulgatus, and Escherichia coli in tissue samples from patients with inflammatory bowel diseases. J. Gastroenterol. 37, 509-516. doi: 10.1007/s005350200079
-
(2002)
J. Gastroenterol.
, vol.37
, pp. 509-516
-
-
Fujita, H.1
Eishi, Y.2
Ishige, I.3
Saitoh, K.4
Takizawa, T.5
Arima, T.6
-
24
-
-
78650616947
-
Toward defining the autoimmune microbiome for type 1 diabetes
-
Giongo, A., Gano, K. A., Crabb, D. B., Mukherjee, N., Novelo, L. L., Casella, G., et al. (2011). Toward defining the autoimmune microbiome for type 1 diabetes. ISME J. 5, 82-91. doi: 10.1038/ismej.2010.92
-
(2011)
ISME J.
, vol.5
, pp. 82-91
-
-
Giongo, A.1
Gano, K.A.2
Crabb, D.B.3
Mukherjee, N.4
Novelo, L.L.5
Casella, G.6
-
25
-
-
23144433822
-
PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
-
Guindon, S., Lethiec, F., Duroux, P., and Gascuel, O. (2005). PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33, W557-W559. doi: 10.1093/nar/gki352
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W557-W559
-
-
Guindon, S.1
Lethiec, F.2
Duroux, P.3
Gascuel, O.4
-
26
-
-
33746395499
-
The Child, Family and Food Nutrition Recommendations for Infants and Young Children as Well as Pregnant and Breastfeeding Mothers
-
Helsinki: Publications of the Finnish Ministry of Social Affairs and Health.
-
Hasunen, K., Kalavainen, M., Keinonen, H., Lagstrom, H., Lyytikainen, A., Nurttila, A., et al. (2004). The Child, Family and Food. Nutrition Recommendations for Infants and Young Children as Well as Pregnant and Breastfeeding Mothers. Helsinki: Publications of the Finnish Ministry of Social Affairs and Health.
-
(2004)
-
-
Hasunen, K.1
Kalavainen, M.2
Keinonen, H.3
Lagstrom, H.4
Lyytikainen, A.5
Nurttila, A.6
-
27
-
-
80051982382
-
Primary dietary intervention study to reduce the risk of islet autoimmunity in children at increased risk for type 1 diabetes: the BABYDIET study
-
Hummel, S., Pflüger, M., Hummel, M., Bonifacio, E., and Ziegler, A. G. (2011). Primary dietary intervention study to reduce the risk of islet autoimmunity in children at increased risk for type 1 diabetes: the BABYDIET study. Diabetes Care 34, 1301-1305. doi: 10.2337/dc10-2456
-
(2011)
Diabetes Care
, vol.34
, pp. 1301-1305
-
-
Hummel, S.1
Pflüger, M.2
Hummel, M.3
Bonifacio, E.4
Ziegler, A.G.5
-
28
-
-
78049494788
-
Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
-
Jakobsson, H. E., Jernberg, C., Andersson, A. F., Sjölund-Karlsson, M., Jansson, J. K., and Engstrand, L. (2010). Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS ONE 5:e9836. doi: 10.1371/journal.pone.0009836
-
(2010)
PLoS ONE
, vol.5
-
-
Jakobsson, H.E.1
Jernberg, C.2
Andersson, A.F.3
Sjölund-Karlsson, M.4
Jansson, J.K.5
Engstrand, L.6
-
29
-
-
84887435395
-
Sickle Windowed Adaptive Trimming for Fastq Files Using Quality
-
Available online at: (Accessed January 13 2014)
-
Joshi, N. (2013). Sickle Windowed Adaptive Trimming for Fastq Files Using Quality. Available online at: https://github.com/najoshi/sickle (Accessed January 13, 2014).
-
(2013)
-
-
Joshi, N.1
-
30
-
-
0027500910
-
A review of the recent epidemiological data on the worldwide incidence of type 1 (insulin-dependent) diabetes mellitus
-
Karvonen, M., Tuomilehto, J., Libman, I., and LaPorte, R. (1993). A review of the recent epidemiological data on the worldwide incidence of type 1 (insulin-dependent) diabetes mellitus. World Health Organization DIAMOND Project Group. Diabetologia 36, 883-892. doi: 10.1007/BF02374468
-
(1993)
World Health Organization DIAMOND Project Group. Diabetologia
, vol.36
, pp. 883-892
-
-
Karvonen, M.1
Tuomilehto, J.2
Libman, I.3
LaPorte, R.4
-
31
-
-
79952142398
-
The incidence of type-1 diabetes in NOD mice is modulated by restricted flora not germ-free conditions
-
King, C., and Sarvetnick, N. (2011). The incidence of type-1 diabetes in NOD mice is modulated by restricted flora not germ-free conditions. PLoS ONE 6:e17049. doi: 10.1371/journal.pone.0017049
-
(2011)
PLoS ONE
, vol.6
-
-
King, C.1
Sarvetnick, N.2
-
32
-
-
31444451575
-
Environmental triggers and determinants of type 1 diabetes
-
Knip, M., Veijola, R., Virtanen, S. M., Hyöty, H., Vaarala, O., and Åkerblom, H. K. (2005). Environmental triggers and determinants of type 1 diabetes. Diabetes 54, S125-S136. doi: 10.2337/diabetes.54.suppl_2.S125
-
(2005)
Diabetes
, vol.54
, pp. S125-S136
-
-
Knip, M.1
Veijola, R.2
Virtanen, S.M.3
Hyöty, H.4
Vaarala, O.5
Åkerblom, H.K.6
-
33
-
-
84901292220
-
The prevalence of species and strains in the human microbiome: a resource for experimental efforts
-
Kraal, L., Abubucker, A., Kota, K., Fischbach, M. A., and Mitreva, M. (2014). The prevalence of species and strains in the human microbiome: a resource for experimental efforts. PLoS ONE 9:e97279. doi: 10.1371/journal.pone.0097279
-
(2014)
PLoS ONE
, vol.9
-
-
Kraal, L.1
Abubucker, A.2
Kota, K.3
Fischbach, M.A.4
Mitreva, M.5
-
34
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K., Hallin, P., Rødland, E. A., Stærfeldt, H. H., Rognes, T., and Ussery, D. W. (2007). RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35, 3100-3108. doi: 10.1093/nar/gkm160
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Stærfeldt, H.H.4
Rognes, T.5
Ussery, D.W.6
-
35
-
-
84905401477
-
The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei of children
-
Leonard, M. T., Davis-Richardson, A. G., Ardissone, A. N., Kemppainen, K., Drew, J. C., Ilonen, J., et al. (2014). The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei of children. Front. Microbiol. 5:361. doi: 10.3389/fmicb.2014.00361
-
(2014)
Front. Microbiol.
, vol.5
, pp. 361
-
-
Leonard, M.T.1
Davis-Richardson, A.G.2
Ardissone, A.N.3
Kemppainen, K.4
Drew, J.C.5
Ilonen, J.6
-
36
-
-
35549007148
-
Short pyrosequencing reads suffice for accurate microbial community analysis
-
Liu, Z., Lozupone, C., Hamady, M., Bushman, F. D., and Knight, R. (2007). Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res. 35, e120. doi: 10.1093/nar/gkm541
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Liu, Z.1
Lozupone, C.2
Hamady, M.3
Bushman, F.D.4
Knight, R.5
-
37
-
-
0037650127
-
Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group - and species - specific primers
-
Liu, C., Song, Y., McTeague, M., Vu, A. W., Wexler, H., and Finegold, S. M. (2003). Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group - and species - specific primers. FEMS Microbiol. Lett. 222, 9-16. doi: 10.1016/S0378-1097(03)00296-9
-
(2003)
FEMS Microbiol. Lett.
, vol.222
, pp. 9-16
-
-
Liu, C.1
Song, Y.2
McTeague, M.3
Vu, A.W.4
Wexler, H.5
Finegold, S.M.6
-
38
-
-
84857011001
-
PANDAseq: paired-end assembler for illumina sequences
-
Masella, A. P., Bartram, A. K., Truszkowski, J. M., Brown, D. G., and Neufeld, J. D. (2012). PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics13:31. doi: 10.1186/1471-2105-13-31
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 31
-
-
Masella, A.P.1
Bartram, A.K.2
Truszkowski, J.M.3
Brown, D.G.4
Neufeld, J.D.5
-
39
-
-
84866003373
-
Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data
-
McMurdie, P. J., and Holmes, S. (2012). Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data. Pac. Symp. Biocomput. 17, 235-246. doi: 10.1142/9789814366496_0023
-
(2012)
Pac. Symp. Biocomput.
, vol.17
, pp. 235-246
-
-
McMurdie, P.J.1
Holmes, S.2
-
40
-
-
0001868071
-
Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA-a new molecular approach to analyse the genetic diversity of mixed microbial communities
-
Muyzer, G., Hottenträger, S., Teske, A., and Wawer, C. (1996). Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA-a new molecular approach to analyse the genetic diversity of mixed microbial communities. Mol. Microbial. Ecol. Manual 3, 1-23.
-
(1996)
Mol. Microbial. Ecol. Manual
, vol.3
, pp. 1-23
-
-
Muyzer, G.1
Hottenträger, S.2
Teske, A.3
Wawer, C.4
-
41
-
-
0033401173
-
Population-based genetic screening for the estimation of Type 1 diabetes mellitus risk in Finland: selective genotyping of markers in the HLA-DQB1, HLA-DQA1 and HLA-DRB1 loci
-
Nejentsev, S., Sjoroos, M., Soukka, T., Knip, M., Simell, O., Lövgren, T., et al. (1999). Population-based genetic screening for the estimation of Type 1 diabetes mellitus risk in Finland: selective genotyping of markers in the HLA-DQB1, HLA-DQA1 and HLA-DRB1 loci. Diabet. Med. 16, 985-992. doi: 10.1046/j.1464-5491.1999.00186.x
-
(1999)
Diabet. Med.
, vol.16
, pp. 985-992
-
-
Nejentsev, S.1
Sjoroos, M.2
Soukka, T.3
Knip, M.4
Simell, O.5
Lövgren, T.6
-
42
-
-
74049161266
-
Age at the introduction of solid foods during the first year and allergic sensitization at age 5 years
-
Nwaru, B. I., Erkkola, M., Ahonen, S., Kaila, M., Haapala, A. M., Kronberg-Kippilä, C., et al. (2010). Age at the introduction of solid foods during the first year and allergic sensitization at age 5 years. Pediatrics 125, 50-59. doi: 10.1542/peds.2009-0813
-
(2010)
Pediatrics
, vol.125
, pp. 50-59
-
-
Nwaru, B.I.1
Erkkola, M.2
Ahonen, S.3
Kaila, M.4
Haapala, A.M.5
Kronberg-Kippilä, C.6
-
43
-
-
84921957745
-
Structure and functions of the gut microbiome
-
Panda, S., Guarner, F., and Manichanh, C. (2014). Structure and functions of the gut microbiome. Endocr. Metab. Immune. Disord. Drug Targets 14, 290-299. doi: 10.2174/1871530314666140714120744
-
(2014)
Endocr. Metab. Immune. Disord. Drug Targets
, vol.14
, pp. 290-299
-
-
Panda, S.1
Guarner, F.2
Manichanh, C.3
-
44
-
-
84866382555
-
Early seroconversion and rapidly increasing autoantibody concentrations predict prepubertal manifestation of type 1 diabetes in children at genetic risk
-
Parikka, V., Näntö-Salonen, K., Saarinen, M., Simell, T., Ilonen, J., Hyöty, H., et al. (2012). Early seroconversion and rapidly increasing autoantibody concentrations predict prepubertal manifestation of type 1 diabetes in children at genetic risk. Diabetologia 55, 1926-1936. doi: 10.1007/s00125-012-2523-3
-
(2012)
Diabetologia
, vol.55
, pp. 1926-1936
-
-
Parikka, V.1
Näntö-Salonen, K.2
Saarinen, M.3
Simell, T.4
Ilonen, J.5
Hyöty, H.6
-
45
-
-
84884146900
-
Species differentiation of Bacteroides dorei from Bacteroides vulgatus and Bacteroides ovatus from Bacteroides xylanisolvens - back to basics
-
Pedersen, P. M., Marmolin, E. S., and Justesen, U. S. (2013). Species differentiation of Bacteroides dorei from Bacteroides vulgatus and Bacteroides ovatus from Bacteroides xylanisolvens - back to basics. Anaerobe 24, 1-3. doi: 10.1016/j.anaerobe.2013.08.004
-
(2013)
Anaerobe
, vol.24
, pp. 1-3
-
-
Pedersen, P.M.1
Marmolin, E.S.2
Justesen, U.S.3
-
46
-
-
0032984363
-
Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli
-
Rath, H. C., Wilson, K. H., and Sartor, R. B. (1999). Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli. Infect. Immun. 67, 2969-2974.
-
(1999)
Infect. Immun.
, vol.67
, pp. 2969-2974
-
-
Rath, H.C.1
Wilson, K.H.2
Sartor, R.B.3
-
48
-
-
85056036546
-
Influence of sample storage on bacterial community diversity in fecal samples
-
Roesch, L. F. W., Casella, G., Simell, O., Krischer, J., Wasserfall, C. H., Schatz, D., et al. (2009a). Influence of sample storage on bacterial community diversity in fecal samples. Open Microbiol. J. 3, 40-46. doi: 10.2174/1874285800903010040
-
(2009)
Open Microbiol. J.
, vol.3
, pp. 40-46
-
-
Roesch, L.F.W.1
Casella, G.2
Simell, O.3
Krischer, J.4
Wasserfall, C.H.5
Schatz, D.6
-
49
-
-
67349112373
-
Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model
-
Roesch, L. F., Lorca, G. L., Casella, G., Giongo, A., Naranjo, A., Pionzio, A. M., et al. (2009b). Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model. ISME J. 3, 536-548 doi: 10.1038/ismej.2009.5
-
(2009)
ISME J.
, vol.3
, pp. 536-548
-
-
Roesch, L.F.1
Lorca, G.L.2
Casella, G.3
Giongo, A.4
Naranjo, A.5
Pionzio, A.M.6
-
50
-
-
0017381987
-
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon
-
Salyers, A. A., Vercellotti, J. R., West, S. E., and Wilkins, T. D. (1977). Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon. Appl. Environ. Microbiol. 33, 319-322.
-
(1977)
Appl. Environ. Microbiol.
, vol.33
, pp. 319-322
-
-
Salyers, A.A.1
Vercellotti, J.R.2
West, S.E.3
Wilkins, T.D.4
-
51
-
-
78649636494
-
Intestinal Bacteroides species associated with coeliac disease
-
Sanchez, E., Donat, E., Ribes-Koninckx, C., Calabuig, M., and Sanz, Y. (2010). Intestinal Bacteroides species associated with coeliac disease. J. Clin. Pathol. 63, 1105-1111. doi: 10.1136/jcp.2010.076950
-
(2010)
J. Clin. Pathol.
, vol.63
, pp. 1105-1111
-
-
Sanchez, E.1
Donat, E.2
Ribes-Koninckx, C.3
Calabuig, M.4
Sanz, Y.5
-
52
-
-
79961038719
-
Influence of environmental and genetic factors linked to celiac disease risk on infant gut colonization by Bacteroides species
-
Sanchez, E., De Palma, G., Capilla, A., Nova, E., Pozo, T., Castillejo, G., et al. (2011). Influence of environmental and genetic factors linked to celiac disease risk on infant gut colonization by Bacteroides species. Appl. Environ. Microbiol. 77, 5316-5323. doi: 10.1128/AEM.00365-11
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 5316-5323
-
-
Sanchez, E.1
De Palma, G.2
Capilla, A.3
Nova, E.4
Pozo, T.5
Castillejo, G.6
-
53
-
-
77952533494
-
OmpA variants affecting the adherence of ulcerative colitis-derived Bacteroides vulgatus
-
Sato, K., Kumita, W., Ode, T., Ichinose, S., Ando, A., Fujiyama, Y., et al. (2010). OmpA variants affecting the adherence of ulcerative colitis-derived Bacteroides vulgatus. J. Med. Dent. Sci. 57, 55-64.
-
(2010)
J. Med. Dent. Sci.
, vol.57
, pp. 55-64
-
-
Sato, K.1
Kumita, W.2
Ode, T.3
Ichinose, S.4
Ando, A.5
Fujiyama, Y.6
-
54
-
-
77953596009
-
A distinctive 'microbial signature' in celiac pediatric patients
-
Schippa, S., Lebba, V., Barbato, M., Di Nardo, G., and Totino, V. (2010). A distinctive 'microbial signature' in celiac pediatric patients. BMC Microbiol. 10:175. doi: 10.1186/1471-2180-10-175
-
(2010)
BMC Microbiol.
, vol.10
, pp. 175
-
-
Schippa, S.1
Lebba, V.2
Barbato, M.3
Di Nardo, G.4
Totino, V.5
-
55
-
-
3142773472
-
BABYDIET, a feasibility study to prevent the appearance of islet autoantibodies in relatives of patients with Type 1 diabetes by delaying exposure to gluten
-
Schmid, S., Buuck, D., Knopff, A., Bonifacio, E., and Ziegler, A. G. (2004). BABYDIET, a feasibility study to prevent the appearance of islet autoantibodies in relatives of patients with Type 1 diabetes by delaying exposure to gluten. Diabetologia 47, 1130-1131. doi: 10.1007/s00125-004-1420-9
-
(2004)
Diabetologia
, vol.47
, pp. 1130-1131
-
-
Schmid, S.1
Buuck, D.2
Knopff, A.3
Bonifacio, E.4
Ziegler, A.G.5
-
56
-
-
33746750046
-
Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes?
-
Comment on: Brugman S et al Diabetologia 50, 220-221
-
Schwartz, R. F., Neu, J., Schatz, D., Atkinson, M. A., and Wasserfall, C. (2007). Comment on: Brugman S et al. (2006) Antibiotic treatment partially protects against type 1 diabetes in the Bio-Breeding diabetes-prone rat. Is the gut flora involved in the development of type 1 diabetes? Diabetologia 49: 2105-2108. Diabetologia 50, 220-221. doi: 10.1007/s00125-006-0526-7
-
(2006)
Diabetologia
, vol.49
, pp. 2105-2108
-
-
Schwartz, R.F.1
Neu, J.2
Schatz, D.3
Atkinson, M.A.4
Wasserfall, C.5
-
57
-
-
0037295590
-
Prevention of gut inflammation by Bifidobacterium in dextran sulfate-treated gnotobiotic mice associated with Bacteroides strains isolated from ulcerative colitis patients
-
Setoyama, H., Imaoka, A., Ishikawa, H., and Umesaki, Y. (2003). Prevention of gut inflammation by Bifidobacterium in dextran sulfate-treated gnotobiotic mice associated with Bacteroides strains isolated from ulcerative colitis patients. Microbes Infect. 5, 115-122. doi: 10.1016/S1286-4579(02)00080-1
-
(2003)
Microbes Infect.
, vol.5
, pp. 115-122
-
-
Setoyama, H.1
Imaoka, A.2
Ishikawa, H.3
Umesaki, Y.4
-
58
-
-
0037971392
-
The suppressive effect of bifidobacteria on Bacteroides vulgatus, a putative pathogenic microbe in inflammatory bowel disease
-
Shiba, T., Aiba, Y., Ishikawa, H., Ushiyama, A., Takagi, A., Mine, T., et al. (2003). The suppressive effect of bifidobacteria on Bacteroides vulgatus, a putative pathogenic microbe in inflammatory bowel disease. Microbiol. Immunol. 47, 371-378. doi: 10.1111/j.1348-0421.2003.tb03368.x
-
(2003)
Microbiol. Immunol.
, vol.47
, pp. 371-378
-
-
Shiba, T.1
Aiba, Y.2
Ishikawa, H.3
Ushiyama, A.4
Takagi, A.5
Mine, T.6
-
60
-
-
57749178141
-
The environmental determinants of diabetes in the young (TEDDY) study
-
TEDDY Study Group. (2008). The environmental determinants of diabetes in the young (TEDDY) study. Ann. N.Y. Acad. Sci. 1150, 1. doi: 10.1196/annals.1447.062
-
(2008)
Ann. N.Y. Acad. Sci.
, vol.1150
, pp. 1
-
-
-
61
-
-
77956409750
-
Lactobacillus johnsonii N6.2 mitigates the development of type 1 diabetes in BB-DP rats
-
Valladares, R., Sankar, D., Li, N., Williams, E., Lai, K. K., Abdelgeliel, A. S., et al. (2010). Lactobacillus johnsonii N6.2 mitigates the development of type 1 diabetes in BB-DP rats. PLoS ONE 5:e10507. doi: 10.1371/journal.pone.0010507
-
(2010)
PLoS ONE
, vol.5
-
-
Valladares, R.1
Sankar, D.2
Li, N.3
Williams, E.4
Lai, K.K.5
Abdelgeliel, A.S.6
-
62
-
-
54549122338
-
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
-
Wen, L., Ley, R. E., Vochkov, P. Y., Stranges, P. B., Avanesyan, L., Stonebraker, A. C., et al. (2008). Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature 455, 1109-1113. doi: 10.1038/nature07336
-
(2008)
Nature
, vol.455
, pp. 1109-1113
-
-
Wen, L.1
Ley, R.E.2
Vochkov, P.Y.3
Stranges, P.B.4
Avanesyan, L.5
Stonebraker, A.C.6
-
64
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108. doi: 10.1126/science.1208344
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.-Y.5
Keilbaugh, S.A.6
|