-
1
-
-
0025183708
-
Basic local alignment search tool
-
COI: 1:CAS:528:DyaK3MXitVGmsA%3D%3D, PID: 2231712
-
Altschul SF, Gish W, Miller W et al (1990) Basic local alignment search tool. J Mol Biol 215(3):403–410
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
-
2
-
-
0035490151
-
Effects of carbohydrates from citrus pulp and hominy feed on microbial fermentation in continuous culture
-
COI: 1:CAS:528:DC%2BD3MXosVKisbY%3D, PID: 11721852
-
Ariza P, Bach A, Stern MD et al (2001) Effects of carbohydrates from citrus pulp and hominy feed on microbial fermentation in continuous culture. J Anim Sci 79(10):2713–2718
-
(2001)
J Anim Sci
, vol.79
, Issue.10
, pp. 2713-2718
-
-
Ariza, P.1
Bach, A.2
Stern, M.D.3
-
3
-
-
79551500179
-
Phylogenetic diversity and dietary association of rumen Treponema revealed using group-specific 16S rRNA gene-based analysis
-
COI: 1:CAS:528:DC%2BC3MXjtVaiurY%3D, PID: 21204927
-
Bekele AZ, Koike S, Kobayashi Y (2011) Phylogenetic diversity and dietary association of rumen Treponema revealed using group-specific 16S rRNA gene-based analysis. FEMS Microbiol Lett 316(1):51–60
-
(2011)
FEMS Microbiol Lett
, vol.316
, Issue.1
, pp. 51-60
-
-
Bekele, A.Z.1
Koike, S.2
Kobayashi, Y.3
-
4
-
-
77953626492
-
Cellulosilyticum ruminicola a newly described rumen bacterium that possesses redundant fibrolytic-protein-encoding genes and degrades lignocellulose with multiple carbohydrate-borne fibrolytic enzymes
-
COI: 1:CAS:528:DC%2BC3cXptVenu7w%3D, PID: 20400560
-
Cai SC, Li JB, Hu FZ et al (2010) Cellulosilyticum ruminicola a newly described rumen bacterium that possesses redundant fibrolytic-protein-encoding genes and degrades lignocellulose with multiple carbohydrate-borne fibrolytic enzymes. Appl Environ Microbiol 76:3818–3824
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3818-3824
-
-
Cai, S.C.1
Li, J.B.2
Hu, F.Z.3
-
5
-
-
80052627204
-
Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during the transition to a high-grain diet
-
COI: 1:CAS:528:DC%2BC3MXhtFGisL3K, PID: 21705529
-
Chen Y, Penner GB, Li M et al (2011) Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during the transition to a high-grain diet. Appl Environ Microbiol 77(16):5770–5781
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.16
, pp. 5770-5781
-
-
Chen, Y.1
Penner, G.B.2
Li, M.3
-
6
-
-
33751016342
-
Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen
-
COI: 1:CAS:528:DC%2BD28XhtlSmtLrO, PID: 17117998
-
Denman SE, McSweeney CS (2006) Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol Ecol 58(3):572–582
-
(2006)
FEMS Microbiol Ecol
, vol.58
, Issue.3
, pp. 572-582
-
-
Denman, S.E.1
McSweeney, C.S.2
-
7
-
-
0000250265
-
Measures of the Amount of Ecologic Association Between Species
-
Dice LR (1945) Measures of the Amount of Ecologic Association Between Species. Ecology 26(3):297–302
-
(1945)
Ecology
, vol.26
, Issue.3
, pp. 297-302
-
-
Dice, L.R.1
-
8
-
-
0034917032
-
Fermentation of pectin and glucose, and activity of pectin-degrading enzymes in the rumen bacterium Lachnospira multiparus
-
Dušková D, Marounek M (2001) Fermentation of pectin and glucose, and activity of pectin-degrading enzymes in the rumen bacterium Lachnospira multiparus. Lett App Microbiol 33(2):159–163
-
(2001)
Lett App Microbiol
, vol.33
, Issue.2
, pp. 159-163
-
-
Dušková, D.1
Marounek, M.2
-
9
-
-
0028063542
-
Degradation and utilization of forage hemicellulose by rumen bacteria, singly in coculture or added sequentially
-
COI: 1:CAS:528:DyaK2MXis1SlsrY%3D, PID: 8002478
-
Fondevila M, Dehority BA (1994) Degradation and utilization of forage hemicellulose by rumen bacteria, singly in coculture or added sequentially. J Appl Bacteriol 77(5):541–548
-
(1994)
J Appl Bacteriol
, vol.77
, Issue.5
, pp. 541-548
-
-
Fondevila, M.1
Dehority, B.A.2
-
10
-
-
0015296560
-
Fermentation of isolated pectin and pectin from intact forages by pure cultures of rumen bacteria
-
COI: 1:CAS:528:DyaE38Xps1yjuw%3D%3D, PID: 4552890
-
Gradel CM, Dehority BA (1972) Fermentation of isolated pectin and pectin from intact forages by pure cultures of rumen bacteria. Appl Microbiol 23(2):332–340
-
(1972)
Appl Microbiol
, vol.23
, Issue.2
, pp. 332-340
-
-
Gradel, C.M.1
Dehority, B.A.2
-
11
-
-
77749324917
-
Carbohydrate source and protein degradability alter lactation, ruminal, and blood measures
-
COI: 1:CAS:528:DC%2BD1MXhs1WhtbrM, PID: 20059929
-
Hall MB, Larson CC, Wilcox CJ (2010) Carbohydrate source and protein degradability alter lactation, ruminal, and blood measures. J Dairy Sci 93(1):311–322
-
(2010)
J Dairy Sci
, vol.93
, Issue.1
, pp. 311-322
-
-
Hall, M.B.1
Larson, C.C.2
Wilcox, C.J.3
-
12
-
-
18144394768
-
Effect of tea saponin on rumen fermentation in vitro
-
COI: 1:CAS:528:DC%2BD2MXjvVKrsrk%3D
-
Hu W-L, Liu J-X, Ye J-A et al (2005) Effect of tea saponin on rumen fermentation in vitro. Anim Feed Sci Technol 120(3):333–339
-
(2005)
Anim Feed Sci Technol
, vol.120
, Issue.3
, pp. 333-339
-
-
Hu, W.-L.1
Liu, J.-X.2
Ye, J.-A.3
-
13
-
-
77954419270
-
Forage type and fish oil cause shifts in rumen bacterial diversity
-
COI: 1:CAS:528:DC%2BC3cXhtVGltLfF
-
Huws SA, Lee MRF, Muetzel SM et al (2010) Forage type and fish oil cause shifts in rumen bacterial diversity. FEMS Microbiol Lett 73(2):396–407
-
(2010)
FEMS Microbiol Lett
, vol.73
, Issue.2
, pp. 396-407
-
-
Huws, S.A.1
Lee, M.R.F.2
Muetzel, S.M.3
-
14
-
-
0028189121
-
Comparison of utilization of pectins from various sources by pure cultures of pectinolytic rumen bacteria and mixed cultures of rumen microorganisms
-
Kasperowicz A (1993) Comparison of utilization of pectins from various sources by pure cultures of pectinolytic rumen bacteria and mixed cultures of rumen microorganisms. Acta Microbiol Polonica 43(1):47–56
-
(1993)
Acta Microbiol Polonica
, vol.43
, Issue.1
, pp. 47-56
-
-
Kasperowicz, A.1
-
15
-
-
0034803204
-
Analysis of the Rumen Bacterial Diversity under two Different Diet Conditions using Denaturing Gradient Gel Electrophoresis, Random Sequencing, and Statistical Ecology Approaches
-
COI: 1:CAS:528:DC%2BD3MXotFSrt7k%3D
-
Kocherginskaya SA, Aminov RI, White BA (2001) Analysis of the Rumen Bacterial Diversity under two Different Diet Conditions using Denaturing Gradient Gel Electrophoresis, Random Sequencing, and Statistical Ecology Approaches. Anaerobe 7(3):119–134
-
(2001)
Anaerobe
, vol.7
, Issue.3
, pp. 119-134
-
-
Kocherginskaya, S.A.1
Aminov, R.I.2
White, B.A.3
-
16
-
-
0035856590
-
Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens
-
COI: 1:CAS:528:DC%2BD3MXos1Kiur8%3D, PID: 11731149
-
Koike S, Kobayashi Y (2001) Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiol Lett 204(2):361–366
-
(2001)
FEMS Microbiol Lett
, vol.204
, Issue.2
, pp. 361-366
-
-
Koike, S.1
Kobayashi, Y.2
-
17
-
-
33847359626
-
Validation and application of real-time polymerase chain reaction assays for representative rumen bacteria
-
COI: 1:CAS:528:DC%2BD2sXkvVOku7g%3D
-
Koike S, Yabuki H, Kobayashi Y (2007) Validation and application of real-time polymerase chain reaction assays for representative rumen bacteria. Anim Sci J 78(2):135–141
-
(2007)
Anim Sci J
, vol.78
, Issue.2
, pp. 135-141
-
-
Koike, S.1
Yabuki, H.2
Kobayashi, Y.3
-
18
-
-
84896712131
-
Monitoring the rumen pectinolytic bacteria Treponema saccharophilum using real-time PCR
-
PID: 24289046
-
Liu J, Wang J-K, Zhu W et al (2013) Monitoring the rumen pectinolytic bacteria Treponema saccharophilum using real-time PCR. FEMS Microbiol Ecol 87(3):576–585
-
(2013)
FEMS Microbiol Ecol
, vol.87
, Issue.3
, pp. 576-585
-
-
Liu, J.1
Wang, J.-K.2
Zhu, W.3
-
19
-
-
0033373916
-
Metabolism of pectin in rumen bacteria Butyrivibrio fibrisolvens and Prevotella ruminicola
-
COI: 1:CAS:528:DC%2BD3cXpvVGrtA%3D%3D
-
Marounek M, Dušková D (1999) Metabolism of pectin in rumen bacteria Butyrivibrio fibrisolvens and Prevotella ruminicola. Lett Appl Microbiol 29(6):429–433
-
(1999)
Lett Appl Microbiol
, vol.29
, Issue.6
, pp. 429-433
-
-
Marounek, M.1
Dušková, D.2
-
20
-
-
0002819544
-
Factors Influencing the Production of Volatile Fatty Acids from Hemicellulose, Pectin and Starch by Mixed Culture of Rumen Microorganisms
-
COI: 1:CAS:528:DyaL2MXhsVOqtbk%3D
-
Marounek M, Bartos S, Brezina P (1985) Factors Influencing the Production of Volatile Fatty Acids from Hemicellulose, Pectin and Starch by Mixed Culture of Rumen Microorganisms. Zeitschrift für Tierphysiologie Tierernährung und Futtermittelkunde 53(1–5):50–58
-
(1985)
Zeitschrift für Tierphysiologie Tierernährung und Futtermittelkunde
, vol.53
, Issue.1-5
, pp. 50-58
-
-
Marounek, M.1
Bartos, S.2
Brezina, P.3
-
21
-
-
77649259831
-
Nutritional implications of fiber and carbohydrate characteristics of corn silage and alfalfa hay. California Animal Nutrition Conf Fresno
-
Mertens DR (2002) Nutritional implications of fiber and carbohydrate characteristics of corn silage and alfalfa hay. California Animal Nutrition Conf Fresno, CA:94–107
-
(2002)
CA
, pp. 94-107
-
-
Mertens, D.R.1
-
22
-
-
72649099482
-
Bio-oil and bio-char production from corn cobs and stover by fast pyrolysis
-
COI: 1:CAS:528:DC%2BD1MXhs1WltLbI
-
Mullen CA, Boateng AA, Goldberg NM et al (2010) Bio-oil and bio-char production from corn cobs and stover by fast pyrolysis. Biomass Bioenergy 34(1):67–74
-
(2010)
Biomass Bioenergy
, vol.34
, Issue.1
, pp. 67-74
-
-
Mullen, C.A.1
Boateng, A.A.2
Goldberg, N.M.3
-
23
-
-
0021846501
-
Treponema saccharophilum sp. nov. a large pectinolytic spirochete from the bovine rumen
-
COI: 1:CAS:528:DyaL2MXltlyiuro%3D, PID: 4051480
-
Paster BJ, Canale-Parola E (1985) Treponema saccharophilum sp. nov. a large pectinolytic spirochete from the bovine rumen. Appl Environ Microbiol 50(2):212–219
-
(1985)
Appl Environ Microbiol
, vol.50
, Issue.2
, pp. 212-219
-
-
Paster, B.J.1
Canale-Parola, E.2
-
24
-
-
0026094291
-
Phylogenetic analysis of the spirochetes
-
COI: 1:CAS:528:DyaK3MXmslGmt78%3D, PID: 1917844
-
Paster BJ, Dewhirst FE, Weisburg WG et al (1991) Phylogenetic analysis of the spirochetes. J Bacteriol 173(19):6101–6109
-
(1991)
J Bacteriol
, vol.173
, Issue.19
, pp. 6101-6109
-
-
Paster, B.J.1
Dewhirst, F.E.2
Weisburg, W.G.3
-
25
-
-
56649089442
-
Treponema zioleckii sp. nov. a novel fructan-utilizing species of rumen treponemes
-
COI: 1:CAS:528:DC%2BD1cXhsFWgsLfF, PID: 19054106
-
Piknova M, Guczynska W, Miltko R et al (2008) Treponema zioleckii sp. nov. a novel fructan-utilizing species of rumen treponemes. FEMS Microbiol Lett 289(2):166–172
-
(2008)
FEMS Microbiol Lett
, vol.289
, Issue.2
, pp. 166-172
-
-
Piknova, M.1
Guczynska, W.2
Miltko, R.3
-
26
-
-
84856728490
-
The effect of pectin, corn and wheat starch, inulin and pH on in vitro production of methane, short chain fatty acids and on the microbial community composition in rumen fluid
-
COI: 1:CAS:528:DC%2BC38XitF2lsLs%3D, PID: 22193552
-
Poulsen M, Jensen BB, Engberg RM (2012) The effect of pectin, corn and wheat starch, inulin and pH on in vitro production of methane, short chain fatty acids and on the microbial community composition in rumen fluid. Anaerobe 18(1):83–90
-
(2012)
Anaerobe
, vol.18
, Issue.1
, pp. 83-90
-
-
Poulsen, M.1
Jensen, B.B.2
Engberg, R.M.3
-
27
-
-
85028164713
-
SAS User’s Guide: Statistics. Version 8.01
-
Inc., Cary, NC:
-
SAS Institute (2000) SAS User’s Guide: Statistics. Version 8.01. SAS Inst. Inc., Cary, NC
-
(2000)
SAS Inst
-
-
-
28
-
-
0019166205
-
Treponema bryantii sp. nov. a rumen spirochete that interacts with cellulolytic bacteria
-
COI: 1:STN:280:DyaL3M%2FjvVehsg%3D%3D, PID: 7425785
-
Stanton TB, Canale-Parola E (1980) Treponema bryantii sp. nov. a rumen spirochete that interacts with cellulolytic bacteria. Arch Microbiol 127:145–156
-
(1980)
Arch Microbiol
, vol.127
, pp. 145-156
-
-
Stanton, T.B.1
Canale-Parola, E.2
-
29
-
-
34247620908
-
Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR
-
COI: 1:CAS:528:DC%2BD2sXks1ahurk%3D, PID: 17235560
-
Stevenson DM, Weimer PJ (2007) Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl Microbiol Biotechnol 75(1):165–174
-
(2007)
Appl Microbiol Biotechnol
, vol.75
, Issue.1
, pp. 165-174
-
-
Stevenson, D.M.1
Weimer, P.J.2
-
30
-
-
0003185856
-
The rumen bacteria
-
Hobson PN, Stewart CS, (eds), Blackie Academic & Professional, London:
-
Stewart CS, Flint HJ, Bryant MP (1997) The rumen bacteria. In: Hobson PN, Stewart CS (eds) The rumen microbial ecosystem, 2nd edn. Blackie Academic & Professional, London, pp 10–72
-
(1997)
The rumen microbial ecosystem
, pp. 10-72
-
-
Stewart, C.S.1
Flint, H.J.2
Bryant, M.P.3
-
31
-
-
0035374841
-
Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR
-
COI: 1:CAS:528:DC%2BD3MXkt1CitLs%3D, PID: 11375193
-
Tajima K, Aminov RI, Nagamine T et al (2001) Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl Environ Microbiol 67(6):2766–2774
-
(2001)
Appl Environ Microbiol
, vol.67
, Issue.6
, pp. 2766-2774
-
-
Tajima, K.1
Aminov, R.I.2
Nagamine, T.3
-
32
-
-
0000945405
-
A simple gas production method using a pressure transducer to determine the fermentation kinetics of ruminant feeds
-
Theodorou MK, Williamsa BA, Dhanoaa MS et al (1994) A simple gas production method using a pressure transducer to determine the fermentation kinetics of ruminant feeds. Anim Feed Sci Technol 48(3–4):185–197
-
(1994)
Anim Feed Sci Technol
, vol.48
, Issue.3-4
, pp. 185-197
-
-
Theodorou, M.K.1
Williamsa, B.A.2
Dhanoaa, M.S.3
-
33
-
-
85028155874
-
What constitutes alfalfa quality: New considerations. In: Proceedings of the 25th Natl Alfalfa Symposium, Liverpool
-
Van Soest PJ (1995) What constitutes alfalfa quality: New considerations. In: Proceedings of the 25th Natl Alfalfa Symposium, Liverpool, NY:1–15
-
(1995)
NY:1–15
-
-
Van Soest, P.J.1
-
34
-
-
0035795219
-
Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
-
COI: 1:CAS:528:DC%2BD3MXhs1eisb0%3D, PID: 11240048
-
Watanabe K, Kodama Y, Harayama S (2001) Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiol Methods 44(3):253–262
-
(2001)
J Microbiol Methods
, vol.44
, Issue.3
, pp. 253-262
-
-
Watanabe, K.1
Kodama, Y.2
Harayama, S.3
-
35
-
-
0015162123
-
Partial characterization of pectinolytic enzymes of Bacteroides ruminicola isolated from the rumen of a sheep
-
Wojciechowicz M (1970) Partial characterization of pectinolytic enzymes of Bacteroides ruminicola isolated from the rumen of a sheep. Acta Microbiol Polonica Series A 3(1):45–56
-
(1970)
Acta Microbiol Polonica Series A
, vol.3
, Issue.1
, pp. 45-56
-
-
Wojciechowicz, M.1
-
36
-
-
0018306275
-
Pectinolytic enzymes of large rumen treponemes
-
COI: 1:CAS:528:DyaE1MXhtFKqsL8%3D, PID: 32839
-
Wojciechowicz M, Ziołecki A (1979) Pectinolytic enzymes of large rumen treponemes. Appl Environ Microbiol 37(1):136–142
-
(1979)
Appl Environ Microbiol
, vol.37
, Issue.1
, pp. 136-142
-
-
Wojciechowicz, M.1
Ziołecki, A.2
-
37
-
-
33644939956
-
A quantitative starch–iodine method for measuring alpha-amylase and glucoamylase activities
-
COI: 1:CAS:528:DC%2BD28XisF2gtLw%3D, PID: 16500607
-
Xiao Z, Storms R, Tsang A (2006) A quantitative starch–iodine method for measuring alpha-amylase and glucoamylase activities. Anal Biochem 351(1):146–148
-
(2006)
Anal Biochem
, vol.351
, Issue.1
, pp. 146-148
-
-
Xiao, Z.1
Storms, R.2
Tsang, A.3
-
38
-
-
2442510059
-
Improved extraction of PCR-quality community DNA from digesta and fecal samples
-
COI: 1:CAS:528:DC%2BD2cXktV2nu7s%3D, PID: 15152600
-
Yu Z, Morrison M (2004) Improved extraction of PCR-quality community DNA from digesta and fecal samples. Biotechniques 36(5):808–812
-
(2004)
Biotechniques
, vol.36
, Issue.5
, pp. 808-812
-
-
Yu, Z.1
Morrison, M.2
-
39
-
-
84864008354
-
Abundance and genetic diversity of microbial polygalacturonase and pectate lyase in the sheep rumen ecosystem
-
COI: 1:CAS:528:DC%2BC38XhtVyrsrnO, PID: 22815874
-
Yuan P, Meng K, Wang Y et al (2012) Abundance and genetic diversity of microbial polygalacturonase and pectate lyase in the sheep rumen ecosystem. PLoS ONE 7(7):e40940
-
(2012)
PLoS ONE
, vol.7
, Issue.7
, pp. e40940
-
-
Yuan, P.1
Meng, K.2
Wang, Y.3
-
40
-
-
52149083924
-
Effect of octadeca carbon fatty acids on microbial fermentation, methanogenesis and microbial flora in vitro
-
COI: 1:CAS:528:DC%2BD1cXhtFCku7fL
-
Zhang C, Guo Y, Yuan Z et al (2008) Effect of octadeca carbon fatty acids on microbial fermentation, methanogenesis and microbial flora in vitro. Anim Feed Sci Technol 146(3):259–269
-
(2008)
Anim Feed Sci Technol
, vol.146
, Issue.3
, pp. 259-269
-
-
Zhang, C.1
Guo, Y.2
Yuan, Z.3
-
41
-
-
84874294859
-
Effects of dietary forage sources on rumen microbial protein synthesis and milk performance in early lactating dairy cows
-
COI: 1:CAS:528:DC%2BC3sXltValtw%3D%3D, PID: 23295118
-
Zhu W, Fu Y, Wang B et al (2013) Effects of dietary forage sources on rumen microbial protein synthesis and milk performance in early lactating dairy cows. J Dairy Sci 96:1727–1734
-
(2013)
J Dairy Sci
, vol.96
, pp. 1727-1734
-
-
Zhu, W.1
Fu, Y.2
Wang, B.3
-
42
-
-
0018306726
-
Isolation and characterization of large treponemes from the bovine rumen
-
PID: 760632
-
Ziołecki A (1979) Isolation and characterization of large treponemes from the bovine rumen. Appl Environ Microbiol 37(1):131–135
-
(1979)
Appl Environ Microbiol
, vol.37
, Issue.1
, pp. 131-135
-
-
Ziołecki, A.1
-
43
-
-
0018946798
-
Small pectinolytic spirochetes from the rumen
-
PID: 7377780
-
Ziołecki A, Wojciechowicz M (1980) Small pectinolytic spirochetes from the rumen. Appl Environ Microbiol 39(4):919–922
-
(1980)
Appl Environ Microbiol
, vol.39
, Issue.4
, pp. 919-922
-
-
Ziołecki, A.1
Wojciechowicz, M.2
|