메뉴 건너뛰기




Volumn 78, Issue 4, 2010, Pages 796-808

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE RIBOSOME RESCUE FACTOR; MESSENGER RNA; PUROMYCIN; RIBOSOME PROTEIN; SSRA PROTEIN; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 78349300881     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2010.07375.x     Document Type: Article
Times cited : (123)

References (38)
  • 1
    • 0343627965 scopus 로고    scopus 로고
    • SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon
    • Abo, T., Inada, T., Ogawa, K., and Aiba, H. (2000) SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon. EMBO J 19: 3762-3769.
    • (2000) EMBO J , vol.19 , pp. 3762-3769
    • Abo, T.1    Inada, T.2    Ogawa, K.3    Aiba, H.4
  • 2
    • 0035985042 scopus 로고    scopus 로고
    • SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli
    • Abo, T., Ueda, K., Sunohara, T., Ogawa, K., and Aiba, H. (2002) SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells 7: 629-638.
    • (2002) Genes Cells , vol.7 , pp. 629-638
    • Abo, T.1    Ueda, K.2    Sunohara, T.3    Ogawa, K.4    Aiba, H.5
  • 3
    • 0020490340 scopus 로고
    • Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein
    • Aiba, H., Fujimoto, S., and Ozaki, N. (1982) Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res 10: 1345-1361.
    • (1982) Nucleic Acids Res , vol.10 , pp. 1345-1361
    • Aiba, H.1    Fujimoto, S.2    Ozaki, N.3
  • 4
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
    • Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Systems Biol 2: 2006.0008.
    • (2006) Mol Systems Biol , vol.2 , pp. 20060008
    • Baba, T.1    Ara, T.2    Hasegawa, M.3    Takai, Y.4    Okumura, Y.5    Baba, M.6
  • 5
    • 2942538589 scopus 로고    scopus 로고
    • Screening for synthetic lethal mutants in Escherichia coli and identification of EnvC (YibP) as a periplasmic septal ring factor with murein hydrolase activity
    • Bernhardt, T.G., and De Boer, P.A. (2004) Screening for synthetic lethal mutants in Escherichia coli and identification of EnvC (YibP) as a periplasmic septal ring factor with murein hydrolase activity. Mol Microbiol 52: 1255-1269.
    • (2004) Mol Microbiol , vol.52 , pp. 1255-1269
    • Bernhardt, T.G.1    De Boer, P.A.2
  • 6
    • 4243073050 scopus 로고    scopus 로고
    • Ribosome stalling and peptidyl-tRNA drop-off during translational delay at AGA codons
    • Cruz-Vera, L.R., Magos-Castro, M.A., Zamora-Romo, E., and Guarneros, G. (2004) Ribosome stalling and peptidyl-tRNA drop-off during translational delay at AGA codons. Nucleic Acids Res 32: 4462-4468.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4462-4468
    • Cruz-Vera, L.R.1    Magos-Castro, M.A.2    Zamora-Romo, E.3    Guarneros, G.4
  • 7
    • 33747145161 scopus 로고    scopus 로고
    • Peptidyl-tRNA hydrolase and its critical role in protein biosynthesis
    • Das, G., and Varshney, U. (2006) Peptidyl-tRNA hydrolase and its critical role in protein biosynthesis. Microbiology 152: 2191-2195.
    • (2006) Microbiology , vol.152 , pp. 2191-2195
    • Das, G.1    Varshney, U.2
  • 8
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K.A., and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640-6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 9
    • 0018338917 scopus 로고
    • Purification of ribosomal proteins from Escherichia coli under nondenaturing conditions
    • Dijk, J., and Littlechild, J. (1972) Purification of ribosomal proteins from Escherichia coli under nondenaturing conditions. Methods Enzymol 59: 481-502.
    • (1972) Methods Enzymol , vol.59 , pp. 481-502
    • Dijk, J.1    Littlechild, J.2
  • 10
    • 42249114323 scopus 로고    scopus 로고
    • Amino acid starvation and Colicin D treatment induceA-site mRNA cleavage in Escherichia coli
    • Garza-Sanchez, F., Gin, J.G., and Hayes, C.S. (2008) Amino acid starvation and Colicin D treatment induceA-site mRNA cleavage in Escherichia coli. J Mol Biol 378: 505-519.
    • (2008) J Mol Biol , vol.378 , pp. 505-519
    • Garza-Sanchez, F.1    Gin, J.G.2    Hayes, C.S.3
  • 11
    • 0030974119 scopus 로고    scopus 로고
    • In vitro selection and evolution of functional proteins by using ribosome display
    • Hanes, J., and Plückthun, A. (1997) In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA 94: 4937-4942.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4937-4942
    • Hanes, J.1    Plückthun, A.2
  • 12
    • 71549151293 scopus 로고    scopus 로고
    • Beyond ribosome rescue: tmRNA and co-translational processes
    • Hayes, C.S., and Keiler, K.C. (2010) Beyond ribosome rescue: tmRNA and co-translational processes. FEBS Letters 584: 413-419.
    • (2010) FEBS Letters , vol.584 , pp. 413-419
    • Hayes, C.S.1    Keiler, K.C.2
  • 13
    • 0034161440 scopus 로고    scopus 로고
    • Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
    • Huang, C., Wolfgang, M.C., Withy, J., Koomey, M., and Friedman, D.I. (2000) Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability. EMBO J 19: 1098-1107.
    • (2000) EMBO J , vol.19 , pp. 1098-1107
    • Huang, C.1    Wolfgang, M.C.2    Withy, J.3    Koomey, M.4    Friedman, D.I.5
  • 14
    • 70350526964 scopus 로고    scopus 로고
    • Kinetics of paused ribosome recycling in Escherichia coli
    • Janssen, B.D., and Hayes, C.S. (2009) Kinetics of paused ribosome recycling in Escherichia coli. J Mol Biol 394: 251-267.
    • (2009) J Mol Biol , vol.394 , pp. 251-267
    • Janssen, B.D.1    Hayes, C.S.2
  • 15
    • 0033953421 scopus 로고    scopus 로고
    • An easy cell-free protein synthesis system dependent on the addition of crude Escherichia coli tRNA
    • Kanda, T., Takai, K., Yokoyama, S., and Takaku, H. (2000) An easy cell-free protein synthesis system dependent on the addition of crude Escherichia coli tRNA. J Biochem 127: 37-41.
    • (2000) J Biochem , vol.127 , pp. 37-41
    • Kanda, T.1    Takai, K.2    Yokoyama, S.3    Takaku, H.4
  • 16
    • 53849117142 scopus 로고    scopus 로고
    • Biology of trans-translation
    • Keiler, K.C. (2008) Biology of trans-translation. Annu Rev Microbiol 62: 133-151.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 133-151
    • Keiler, K.C.1
  • 17
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of protein synthesized from damaged messenger RNA
    • Keiler, K.C., Weller, P.R., and Sauer, R.T. (1996) Role of a peptide tagging system in degradation of protein synthesized from damaged messenger RNA. Science 271: 990-993.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Weller, P.R.2    Sauer, R.T.3
  • 18
    • 0028124122 scopus 로고
    • A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
    • Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K., and Inokuchi, H. (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc Natl Acad Sci USA 91: 9223-9227.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9223-9227
    • Komine, Y.1    Kitabatake, M.2    Yokogawa, T.3    Nishikawa, K.4    Inokuchi, H.5
  • 19
    • 0023215530 scopus 로고
    • A low-copy-number vector utilizing beta-galactosidase for the analysis of gene control elements
    • Koop, A.H., Hartley, M.E., and Bourgeois, S. (1987) A low-copy-number vector utilizing beta-galactosidase for the analysis of gene control elements. Gene 52: 245-256.
    • (1987) Gene , vol.52 , pp. 245-256
    • Koop, A.H.1    Hartley, M.E.2    Bourgeois, S.3
  • 20
    • 66749121220 scopus 로고    scopus 로고
    • Analysis of nonstop mRNA translation in the absence of tmRNA in Escherichia coli
    • Kuroha, K., Horiguchi, N., Aiba, H., and Inada, T. (2009) Analysis of nonstop mRNA translation in the absence of tmRNA in Escherichia coli. Genes Cells 14: 739-749.
    • (2009) Genes Cells , vol.14 , pp. 739-749
    • Kuroha, K.1    Horiguchi, N.2    Aiba, H.3    Inada, T.4
  • 21
    • 41049097536 scopus 로고    scopus 로고
    • Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli
    • Li, X., Yogi, M., Morita, T., and Aiba, H. (2008) Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli. Mol Microbiol 68: 462-473.
    • (2008) Mol Microbiol , vol.68 , pp. 462-473
    • Li, X.1    Yogi, M.2    Morita, T.3    Aiba, H.4
  • 22
    • 0032568544 scopus 로고    scopus 로고
    • Translation inhibitors stabilize Escherichia coli mRNAs independently of ribosome protection
    • Lopez, P.J., Marchand, I., Yarchuk, O., and Dreyfus, M. (1998) Translation inhibitors stabilize Escherichia coli mRNAs independently of ribosome protection. Proc Natl Acad Sci USA 95: 6067-6072.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6067-6072
    • Lopez, P.J.1    Marchand, I.2    Yarchuk, O.3    Dreyfus, M.4
  • 23
    • 0003842951 scopus 로고
    • A Short Course in Bacterial Genetics: A Laboratory Manual for Escherichia coli and Related Bacteria
    • Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • Miller, J.H. (1992) A Short Course in Bacterial Genetics: A Laboratory Manual for Escherichia coli and Related Bacteria. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • (1992)
    • Miller, J.H.1
  • 24
    • 26944431987 scopus 로고    scopus 로고
    • Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli
    • Moore, S.D., and Sauer, R.T. (2005) Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli. Mol Microbiol 58: 456-466.
    • (2005) Mol Microbiol , vol.58 , pp. 456-466
    • Moore, S.D.1    Sauer, R.T.2
  • 25
    • 34247103448 scopus 로고    scopus 로고
    • The tmRNA system for translational surveillance and ribosome rescue
    • Moore, S.D., and Sauer, R.T. (2007) The tmRNA system for translational surveillance and ribosome rescue. Annu Rev Biochem 76: 101-124.
    • (2007) Annu Rev Biochem , vol.76 , pp. 101-124
    • Moore, S.D.1    Sauer, R.T.2
  • 26
    • 33646517888 scopus 로고    scopus 로고
    • Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall
    • Muto, H., Nakatogawa, H., and Ito, K. (2006) Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall. Mol Cell 22: 545-552.
    • (2006) Mol Cell , vol.22 , pp. 545-552
    • Muto, H.1    Nakatogawa, H.2    Ito, K.3
  • 27
    • 0034111320 scopus 로고    scopus 로고
    • The Salmonella FlgA protein, a putative periplasmic chaperone essential for flagellar P ring formation
    • Nambu, T., and Kutsukake, K. (2000) The Salmonella FlgA protein, a putative periplasmic chaperone essential for flagellar P ring formation. Microbiology 146: 1171-1178.
    • (2000) Microbiology , vol.146 , pp. 1171-1178
    • Nambu, T.1    Kutsukake, K.2
  • 28
    • 65949086018 scopus 로고    scopus 로고
    • Suppression by enhanced RpoE activity of the temperature-sensitive phenotype of a degP ssrA double mutant in Escherichia coli
    • Ono, K., Kutsukake, K., and Abo, T. (2009) Suppression by enhanced RpoE activity of the temperature-sensitive phenotype of a degP ssrA double mutant in Escherichia coli. Genes Genet Syst 84: 15-24.
    • (2009) Genes Genet Syst , vol.84 , pp. 15-24
    • Ono, K.1    Kutsukake, K.2    Abo, T.3
  • 29
    • 70349705756 scopus 로고    scopus 로고
    • Biochemical and structural studies of the large Ycf4-photosystem I assembly complex of the green alga Chlamydomonas reinhardtii
    • Ozawa, S., Nield, J., Terao, A., Stauber, E.J., Hipper, M., Koike, H., et al. (2009) Biochemical and structural studies of the large Ycf4-photosystem I assembly complex of the green alga Chlamydomonas reinhardtii. Plant Cell 21: 2424-2442.
    • (2009) Plant Cell , vol.21 , pp. 2424-2442
    • Ozawa, S.1    Nield, J.2    Terao, A.3    Stauber, E.J.4    Hipper, M.5    Koike, H.6
  • 30
    • 0001951544 scopus 로고
    • Transcription and Translation: A Practical Approach
    • Hames, B.D., and Higgins, S.J. (eds). New York: IRL Press
    • Pratt, J.M. (1984) Coupled transcription-translation in prokaryotic cell-free systems. In Transcription and Translation: A Practical Approach. Hames, B.D., and Higgins, S.J. (eds). New York: IRL Press, pp. 179-209.
    • (1984) Coupled transcription-translation in prokaryotic cell-free systems , pp. 179-209
    • Pratt, J.M.1
  • 31
    • 77949547496 scopus 로고    scopus 로고
    • A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome
    • Richter, R., Rorbach, J., Pajak, A., Smith, P.M., Wessels, H.J., Huynen, M.A., et al. (2010) A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome. EMBO J 29: 1116-1125.
    • (2010) EMBO J , vol.29 , pp. 1116-1125
    • Richter, R.1    Rorbach, J.2    Pajak, A.3    Smith, P.M.4    Wessels, H.J.5    Huynen, M.A.6
  • 32
    • 0033971754 scopus 로고    scopus 로고
    • EcoGene: a genome sequence database for Escherichia coli K-12
    • Rudd, K.E. (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28: 60-64.
    • (2000) Nucleic Acids Res , vol.28 , pp. 60-64
    • Rudd, K.E.1
  • 33
    • 11344289875 scopus 로고    scopus 로고
    • A physiological connection between tmRNA and peptidyl-tRNA hydrolase functions in Escherichia coli
    • Singh, N.S., and Varshney, U. (2004) A physiological connection between tmRNA and peptidyl-tRNA hydrolase functions in Escherichia coli. Nucleic Acids Res 32: 6028-6037.
    • (2004) Nucleic Acids Res , vol.32 , pp. 6028-6037
    • Singh, N.S.1    Varshney, U.2
  • 34
    • 0036850399 scopus 로고    scopus 로고
    • The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons
    • Sunohara, T., Abo, T., Inada, T., and Aiba, H. (2002) The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons. RNA 8: 1416-1427.
    • (2002) RNA , vol.8 , pp. 1416-1427
    • Sunohara, T.1    Abo, T.2    Inada, T.3    Aiba, H.4
  • 35
    • 44649171519 scopus 로고    scopus 로고
    • New features of the ribosome and ribosomal inhibitors: non-enzymatic recycling, misreading and back-translocation
    • Szaflarski, W., Vesper, O., Teraoka, Y., Plitta, B., Wilson, D.N., and Nierhaus, K.H. (2008) New features of the ribosome and ribosomal inhibitors: non-enzymatic recycling, misreading and back-translocation. J Mol Biol 380: 193-205.
    • (2008) J Mol Biol , vol.380 , pp. 193-205
    • Szaflarski, W.1    Vesper, O.2    Teraoka, Y.3    Plitta, B.4    Wilson, D.N.5    Nierhaus, K.H.6
  • 36
    • 0030017786 scopus 로고    scopus 로고
    • Codon-reading specificity of an unmodified form of Escherichia coli tRNA1Ser in cell-free protein synthesis
    • Takai, K., Takaku, H., and Yokoyama, S. (1996) Codon-reading specificity of an unmodified form of Escherichia coli tRNA1Ser in cell-free protein synthesis. Nucleic Acids Res 24: 2894-2899.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2894-2899
    • Takai, K.1    Takaku, H.2    Yokoyama, S.3
  • 37
    • 84955162315 scopus 로고    scopus 로고
    • Protein Synthesis and Ribosome Structure
    • Nierhaus, K.H., and Wilson, D.N. (eds). Weinheim: Wiley-VCH Verlag GmbH&Co. KGaA
    • Wilson, D.N. (2004) Antibiotics and the inhibition of ribosome function. In Protein Synthesis and Ribosome Structure. Nierhaus, K.H., and Wilson, D.N. (eds). Weinheim: Wiley-VCH Verlag GmbH&Co. KGaA, pp. 449-528.
    • (2004) Antibiotics and the inhibition of ribosome function , pp. 449-528
    • Wilson, D.N.1
  • 38
    • 0037377346 scopus 로고    scopus 로고
    • SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs
    • Yamamoto, Y., Sunohara, T., Jojima, K., Inada, T., and Aiba, H. (2003) SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs. RNA 9: 408-418.
    • (2003) RNA , vol.9 , pp. 408-418
    • Yamamoto, Y.1    Sunohara, T.2    Jojima, K.3    Inada, T.4    Aiba, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.