메뉴 건너뛰기




Volumn 8, Issue 2, 2013, Pages

tmRNA Is Essential in Shigella flexneri

Author keywords

[No Author keywords available]

Indexed keywords

ARF PROTEIN; MESSENGER RNA; TRANSFER MESSENGER RNA; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 84874378359     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0057537     Document Type: Article
Times cited : (29)

References (39)
  • 1
    • 0014126461 scopus 로고
    • Polypeptide chain termination in vitro: isolation of a release factor
    • Capecchi MR, (1967) Polypeptide chain termination in vitro: isolation of a release factor. Proc Natl Acad Sci U S A 58: 1144-1151.
    • (1967) Proc Natl Acad Sci U S A , vol.58 , pp. 1144-1151
    • Capecchi, M.R.1
  • 3
    • 36049041612 scopus 로고    scopus 로고
    • RNA quality control in eukaryotes
    • Doma MK, Parker R, (2007) RNA quality control in eukaryotes. Cell 131: 660-668.
    • (2007) Cell , vol.131 , pp. 660-668
    • Doma, M.K.1    Parker, R.2
  • 4
    • 82655189187 scopus 로고    scopus 로고
    • Nascentome analysis uncovers futile protein synthesis in Escherichia coli
    • Ito K, Chadani Y, Nakamori K, Chiba S, Akiyama Y, et al. (2011) Nascentome analysis uncovers futile protein synthesis in Escherichia coli. PLoS One 6: e28413.
    • (2011) PLoS One , vol.6
    • Ito, K.1    Chadani, Y.2    Nakamori, K.3    Chiba, S.4    Akiyama, Y.5
  • 5
    • 80053560572 scopus 로고    scopus 로고
    • Bifunctional transfer-messenger RNA
    • Keiler KC, Ramadoss NS, (2011) Bifunctional transfer-messenger RNA. Biochimie 93: 1993-1997.
    • (2011) Biochimie , vol.93 , pp. 1993-1997
    • Keiler, K.C.1    Ramadoss, N.S.2
  • 6
    • 33749395736 scopus 로고    scopus 로고
    • Role of conserved surface amino acids in binding of SmpB protein to SsrA RNA
    • Dulebohn DP, Cho HJ, Karzai AW, (2006) Role of conserved surface amino acids in binding of SmpB protein to SsrA RNA. J Biol Chem 281: 28536-28545.
    • (2006) J Biol Chem , vol.281 , pp. 28536-28545
    • Dulebohn, D.P.1    Cho, H.J.2    Karzai, A.W.3
  • 7
    • 0345465673 scopus 로고    scopus 로고
    • SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
    • Karzai AW, Susskind MM, Sauer RT, (1999) SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J 18: 3793-3799.
    • (1999) EMBO J , vol.18 , pp. 3793-3799
    • Karzai, A.W.1    Susskind, M.M.2    Sauer, R.T.3
  • 8
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler KC, Waller PR, Sauer RT, (1996) Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271: 990-993.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.2    Sauer, R.T.3
  • 9
    • 0030063988 scopus 로고    scopus 로고
    • Sequence determinants of C-terminal substrate recognition by the Tsp protease
    • Keiler KC, Sauer RT, (1996) Sequence determinants of C-terminal substrate recognition by the Tsp protease. J Biol Chem 271: 2589-2593.
    • (1996) J Biol Chem , vol.271 , pp. 2589-2593
    • Keiler, K.C.1    Sauer, R.T.2
  • 10
    • 0032079329 scopus 로고    scopus 로고
    • The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
    • Gottesman S, Roche E, Zhou Y, Sauer RT, (1998) The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev 12: 1338-1347.
    • (1998) Genes Dev , vol.12 , pp. 1338-1347
    • Gottesman, S.1    Roche, E.2    Zhou, Y.3    Sauer, R.T.4
  • 11
    • 2642666491 scopus 로고    scopus 로고
    • Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)
    • Herman C, Thevenet D, Bouloc P, Walker GC, D'Ari R, (1998) Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH). Genes Dev 12: 1348-1355.
    • (1998) Genes Dev , vol.12 , pp. 1348-1355
    • Herman, C.1    Thevenet, D.2    Bouloc, P.3    Walker, G.C.4    D'Ari, R.5
  • 12
    • 34548569082 scopus 로고    scopus 로고
    • Lon protease degrades transfer-messenger RNA-tagged proteins
    • Choy JS, Aung LL, Karzai AW, (2007) Lon protease degrades transfer-messenger RNA-tagged proteins. J Bacteriol 189: 6564-6571.
    • (2007) J Bacteriol , vol.189 , pp. 6564-6571
    • Choy, J.S.1    Aung, L.L.2    Karzai, A.W.3
  • 13
    • 0037377346 scopus 로고    scopus 로고
    • SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs
    • Yamamoto Y, Sunohara T, Jojima K, Inada T, Aiba H, (2003) SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs. RNA 9: 408-418.
    • (2003) RNA , vol.9 , pp. 408-418
    • Yamamoto, Y.1    Sunohara, T.2    Jojima, K.3    Inada, T.4    Aiba, H.5
  • 14
    • 33751358590 scopus 로고    scopus 로고
    • RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner
    • Richards J, Mehta P, Karzai AW, (2006) RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner. Mol Microbiol 62: 1700-1712.
    • (2006) Mol Microbiol , vol.62 , pp. 1700-1712
    • Richards, J.1    Mehta, P.2    Karzai, A.W.3
  • 15
    • 0346494971 scopus 로고    scopus 로고
    • The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts
    • Gueneau de Novoa P, Williams KP, (2004) The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts. Nucleic Acids Res 32: D104-108.
    • (2004) Nucleic Acids Res , vol.32
    • Gueneau de Novoa, P.1    Williams, K.P.2
  • 16
    • 0037154255 scopus 로고    scopus 로고
    • A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae
    • Akerley BJ, Rubin EJ, Novick VL, Amaya K, Judson N, et al. (2002) A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae. Proc Natl Acad Sci U S A 99: 966-971.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 966-971
    • Akerley, B.J.1    Rubin, E.J.2    Novick, V.L.3    Amaya, K.4    Judson, N.5
  • 17
    • 0034161440 scopus 로고    scopus 로고
    • Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
    • Huang C, Wolfgang MC, Withey J, Koomey M, Friedman DI, (2000) Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability. EMBO J 19: 1098-1107.
    • (2000) EMBO J , vol.19 , pp. 1098-1107
    • Huang, C.1    Wolfgang, M.C.2    Withey, J.3    Koomey, M.4    Friedman, D.I.5
  • 18
    • 0032764518 scopus 로고    scopus 로고
    • Global transposon mutagenesis and a minimal Mycoplasma genome
    • Hutchison CA, Peterson SN, Gill SR, Cline RT, White O, et al. (1999) Global transposon mutagenesis and a minimal Mycoplasma genome. Science 286: 2165-2169.
    • (1999) Science , vol.286 , pp. 2165-2169
    • Hutchison, C.A.1    Peterson, S.N.2    Gill, S.R.3    Cline, R.T.4    White, O.5
  • 19
    • 56849098856 scopus 로고    scopus 로고
    • Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence
    • Thibonnier M, Thiberge JM, De Reuse H, (2008) Trans-translation in Helicobacter pylori: essentiality of ribosome rescue and requirement of protein tagging for stress resistance and competence. PLoS One 3: e3810.
    • (2008) PLoS One , vol.3
    • Thibonnier, M.1    Thiberge, J.M.2    De Reuse, H.3
  • 20
    • 34247165146 scopus 로고    scopus 로고
    • Physiology of tmRNA: what gets tagged and why
    • Keiler KC, (2007) Physiology of tmRNA: what gets tagged and why? Curr Opin Microbiol 10: 169-175.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 169-175
    • Keiler, K.C.1
  • 21
    • 0025800215 scopus 로고
    • 10Sa RNA, a small stable RNA of Escherichia coli, is functional
    • Oh BK, Apirion D, (1991) 10Sa RNA, a small stable RNA of Escherichia coli, is functional. Mol Gen Genet 229: 52-56.
    • (1991) Mol Gen Genet , vol.229 , pp. 52-56
    • Oh, B.K.1    Apirion, D.2
  • 22
    • 78349300881 scopus 로고    scopus 로고
    • Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system
    • Chadani Y, Ono K, Ozawa S, Takahashi Y, Takai K, et al. (2010) Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system. Mol Microbiol 78: 796-808.
    • (2010) Mol Microbiol , vol.78 , pp. 796-808
    • Chadani, Y.1    Ono, K.2    Ozawa, S.3    Takahashi, Y.4    Takai, K.5
  • 23
    • 84867044295 scopus 로고    scopus 로고
    • ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli
    • Chadani Y, Ito K, Kutsukake K, Abo T, (2012) ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli. Mol Microbiol 86: 37-50.
    • (2012) Mol Microbiol , vol.86 , pp. 37-50
    • Chadani, Y.1    Ito, K.2    Kutsukake, K.3    Abo, T.4
  • 24
    • 84867267912 scopus 로고    scopus 로고
    • ArfA recruits RF2 into stalled ribosomes
    • Shimizu Y, (2012) ArfA recruits RF2 into stalled ribosomes. J Mol Biol 423: 624-631.
    • (2012) J Mol Biol , vol.423 , pp. 624-631
    • Shimizu, Y.1
  • 26
    • 84865528147 scopus 로고    scopus 로고
    • Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs
    • Schaub RE, Poole SJ, Garza-Sanchez F, Benbow S, Hayes CS, (2012) Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs. J Biol Chem 287: 29765-29775.
    • (2012) J Biol Chem , vol.287 , pp. 29765-29775
    • Schaub, R.E.1    Poole, S.J.2    Garza-Sanchez, F.3    Benbow, S.4    Hayes, C.S.5
  • 27
    • 0242416999 scopus 로고    scopus 로고
    • Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T
    • Wei J, Goldberg MB, Burland V, Venkatesan MM, Deng W, et al. (2003) Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect Immun 71: 2775-2786.
    • (2003) Infect Immun , vol.71 , pp. 2775-2786
    • Wei, J.1    Goldberg, M.B.2    Burland, V.3    Venkatesan, M.M.4    Deng, W.5
  • 29
    • 0037227964 scopus 로고    scopus 로고
    • TmRNA is required for correct timing of DNA replication in Caulobacter crescentus
    • Keiler KC, Shapiro L, (2003) TmRNA is required for correct timing of DNA replication in Caulobacter crescentus. J Bacteriol 185: 573-580.
    • (2003) J Bacteriol , vol.185 , pp. 573-580
    • Keiler, K.C.1    Shapiro, L.2
  • 30
    • 79955008757 scopus 로고    scopus 로고
    • Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrA- and ArfA-mediated pathways
    • Chadani Y, Ono K, Kutsukake K, Abo T, (2011) Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrA- and ArfA-mediated pathways. Mol Microbiol 80: 772-785.
    • (2011) Mol Microbiol , vol.80 , pp. 772-785
    • Chadani, Y.1    Ono, K.2    Kutsukake, K.3    Abo, T.4
  • 31
    • 79953142009 scopus 로고    scopus 로고
    • YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes
    • Handa Y, Inaho N, Nameki N, (2011) YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes. Nucleic Acids Res 39: 1739-1748.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1739-1748
    • Handa, Y.1    Inaho, N.2    Nameki, N.3
  • 32
    • 0023948010 scopus 로고
    • High efficiency transformation of E. coli by high voltage electroporation
    • Dower WJ, Miller JF, Ragsdale CW, (1988) High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16: 6127-6145.
    • (1988) Nucleic Acids Res , vol.16 , pp. 6127-6145
    • Dower, W.J.1    Miller, J.F.2    Ragsdale, C.W.3
  • 33
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640-6645.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 35
    • 0013935129 scopus 로고
    • A model for three-point analysis of random general transduction
    • Wu TT, (1966) A model for three-point analysis of random general transduction. Genetics 54: 405-410.
    • (1966) Genetics , vol.54 , pp. 405-410
    • Wu, T.T.1
  • 39
    • 33646568438 scopus 로고    scopus 로고
    • Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
    • Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res 12: 291-299.
    • (2005) DNA Res , vol.12 , pp. 291-299
    • Kitagawa, M.1    Ara, T.2    Arifuzzaman, M.3    Ioka-Nakamichi, T.4    Inamoto, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.