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Volumn 42, Issue 18, 2014, Pages 11733-11751

Direct entry by RNase e is a major pathway for the degradation and processing of RNA in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; MESSENGER RNA; RIBONUCLEASE; RIBONUCLEASE E; RNG PROTEIN, E COLI;

EID: 84920786962     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku808     Document Type: Article
Times cited : (80)

References (74)
  • 2
    • 84871321022 scopus 로고    scopus 로고
    • RNase E: At the interface of bacterial RNA processing and decay
    • Mackie, G. A. (2013) RNase E: At the interface of bacterial RNA processing and decay. Nat. Rev. Microbiol., 11, 45-57.
    • (2013) Nat. Rev. Microbiol. , vol.11 , pp. 45-57
    • Mackie, G.A.1
  • 3
    • 0017887243 scopus 로고
    • Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA
    • Apirion, D. And Lassar, A. B. (1978) Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA. J. Biol. Chem., 253, 1738-1742.
    • (1978) J. Biol. Chem. , vol.253 , pp. 1738-1742
    • Apirion, D.1    Lassar, A.B.2
  • 4
    • 0018791193 scopus 로고
    • Conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA
    • Ono, M. And Kuwano, M. (1979) Conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA. J. Mol. Biol., 129, 343-357.
    • (1979) J. Mol. Biol. , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 5
    • 0027273009 scopus 로고
    • The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus
    • McDowall, K. J., Hernandez, R. G., Lin-Chao, S. And Cohen, S. N. (1993) The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus. J. Bacteriol., 175, 4245-4249.
    • (1993) J. Bacteriol. , vol.175 , pp. 4245-4249
    • McDowall, K.J.1    Hernandez, R.G.2    Lin-Chao, S.3    Cohen, S.N.4
  • 6
    • 27144495430 scopus 로고    scopus 로고
    • Structure of Escherichia coli RNase e catalytic domain and implications for RNA turnover
    • Callaghan, A. J., Marcaida, M. J., Stead, J. A., McDowall, K. J., Scott, W. G. And Luisi, B. F. (2005) Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature, 437, 1187-1191.
    • (2005) Nature , vol.437 , pp. 1187-1191
    • Callaghan, A.J.1    Marcaida, M.J.2    Stead, J.A.3    McDowall, K.J.4    Scott, W.G.5    Luisi, B.F.6
  • 7
    • 0018582283 scopus 로고
    • RNase E, an RNA processing enzyme from Escherichia coli
    • Misra, T. K. And Apirion, D. (1979) RNase E, an RNA processing enzyme from Escherichia coli. J. Biol. Chem., 254, 1154-1159.
    • (1979) J. Biol. Chem. , vol.254 , pp. 1154-1159
    • Misra, T.K.1    Apirion, D.2
  • 8
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease e is a 5-end-dependent endonuclease
    • Mackie, G. A. (1998) Ribonuclease E is a 5-end-dependent endonuclease. Nature, 395, 720-723.
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.A.1
  • 9
    • 34250875706 scopus 로고    scopus 로고
    • Initiation of RNA decay in Escherichia coli by 5 pyrophosphate removal
    • Celesnik, H., Deana, A. And Belasco, J. G. (2007) Initiation of RNA decay in Escherichia coli by 5 pyrophosphate removal. Mol. Cell, 27, 79-90.
    • (2007) Mol. Cell , vol.27 , pp. 79-90
    • Celesnik, H.1    Deana, A.2    Belasco, J.G.3
  • 10
    • 38349117689 scopus 로고    scopus 로고
    • The bacterial enzyme RppH triggers messenger RNA degradation by 5 pyrophosphate removal
    • Deana, A., Celesnik, H. And Belasco, J. G. (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5-pyrophosphate removal. Nature, 451, 355-358.
    • (2008) Nature , vol.451 , pp. 355-358
    • Deana, A.1    Celesnik, H.2    Belasco, J.G.3
  • 11
    • 77953884287 scopus 로고    scopus 로고
    • All things must pass: Contrasts and commonalities in eukaryotic and bacterial mRNA decay
    • Belasco, J. G. (2010) All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay. Nat. Rev. Mol. Cell. Biol., 11, 467-478.
    • (2010) Nat. Rev. Mol. Cell. Biol. , vol.11 , pp. 467-478
    • Belasco, J.G.1
  • 12
    • 77951539769 scopus 로고    scopus 로고
    • Rapid cleavage of RNA by RNase e in the absence of 5-monophosphate stimulation
    • Kime, L., Jourdan, S. S., Stead, J. A., Hidalgo-Sastre, A. And McDowall, K. J. (2010) Rapid cleavage of RNA by RNase E in the absence of 5-monophosphate stimulation. Mol. Microbiol., 76, 590-604.
    • (2010) Mol. Microbiol. , vol.76 , pp. 590-604
    • Kime, L.1    Jourdan, S.S.2    Stead, J.A.3    Hidalgo-Sastre, A.4    McDowall, K.J.5
  • 13
    • 84898986431 scopus 로고    scopus 로고
    • Adjacent single-stranded regions mediate processing of tRNA precursors by RNase e direct entry
    • Kime, L., Clarke, J. E., Romero, A. D., Grasby, J. A. And McDowall, K. J. (2014) Adjacent single-stranded regions mediate processing of tRNA precursors by RNase E direct entry. Nucleic Acids Res., 42, 4577-4589.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 4577-4589
    • Kime, L.1    Clarke, J.E.2    Romero, A.D.3    Grasby, J.A.4    McDowall, K.J.5
  • 14
    • 79958839563 scopus 로고    scopus 로고
    • Roles of the 5-phosphate sensor domain in RNase e
    • Garrey, S. M. And Mackie, G. A. (2011) Roles of the 5-phosphate sensor domain in RNase E. Mol. Microbiol., 80, 1613-1624.
    • (2011) Mol. Microbiol. , vol.80 , pp. 1613-1624
    • Garrey, S.M.1    Mackie, G.A.2
  • 15
    • 0032476812 scopus 로고    scopus 로고
    • Polyvalent interactions in biological systems: Implications for design and use of multivalent ligands and inhibitors
    • Mammen, M., Choi, S. K. And Whitesides, G. M. (1998) Polyvalent interactions in biological systems: Implications for design and use of multivalent ligands and inhibitors. Angew. Chem. Int. Ed. Engl., 37, 2755-2794.
    • (1998) Angew. Chem. Int. Ed. Engl. , vol.37 , pp. 2755-2794
    • Mammen, M.1    Choi, S.K.2    Whitesides, G.M.3
  • 16
    • 0029962989 scopus 로고    scopus 로고
    • The N-terminal domain of the rne gene product has RNase e activity and is non-overlapping with the arginine-rich RNA-binding site
    • McDowall, K. J. And Cohen, S. N. (1996) The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site. J. Mol. Biol., 255, 349-355.
    • (1996) J. Mol. Biol. , vol.255 , pp. 349-355
    • McDowall, K.J.1    Cohen, S.N.2
  • 17
    • 0037115876 scopus 로고    scopus 로고
    • The phylogenetic distribution of bacterial ribonucleases
    • Condon, C. And Putzer, H. (2002) The phylogenetic distribution of bacterial ribonucleases. Nucleic Acids Res., 30, 5339-5346.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 5339-5346
    • Condon, C.1    Putzer, H.2
  • 19
    • 79953097421 scopus 로고    scopus 로고
    • Composition and conservation of the mRNA-degrading machinery in bacteria
    • Kaberdin, V. R., Singh, D. And Lin-Chao, S. (2011) Composition and conservation of the mRNA-degrading machinery in bacteria. J. Biomed. Sci., 18, 23.
    • (2011) J. Biomed. Sci. , vol.18 , pp. 23
    • Kaberdin, V.R.1    Singh, D.2    Lin-Chao, S.3
  • 21
    • 0028269435 scopus 로고
    • Copurification of RNAase e and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis, A. J., van Houwe, G., Ehretsmann, C. And Krisch, H. M. (1994) Copurification of RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell, 76, 889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 22
    • 0029976430 scopus 로고    scopus 로고
    • Proteins associated with RNase e in a multicomponent ribonucleolytic complex
    • Miczak, A., Kaberdin, V. R., Wei, C. L. And Lin-Chao, S. (1996) Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proc. Natl. Acad. Sci. U. S. A., 93, 3865-3869.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 3865-3869
    • Miczak, A.1    Kaberdin, V.R.2    Wei, C.L.3    Lin-Chao, S.4
  • 23
    • 0029889965 scopus 로고    scopus 로고
    • RNase e polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
    • Kido, M., Yamanaka, K., Mitani, T., Niki, H., Ogura, T. And Hiraga, S. (1996) RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli. J. Bacteriol., 178, 3917-3925.
    • (1996) J. Bacteriol. , vol.178 , pp. 3917-3925
    • Kido, M.1    Yamanaka, K.2    Mitani, T.3    Niki, H.4    Ogura, T.5    Hiraga, S.6
  • 24
    • 0036047092 scopus 로고    scopus 로고
    • Function in Escherichia coli of the non-catalytic part of RNase E: Role in the degradation of ribosome-free mRNA
    • Leroy, A., Vanzo, N. F., Sousa, S., Dreyfus, M. And Carpousis, A. J. (2002) Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Mol. Microbiol., 45, 1231-1243.
    • (2002) Mol. Microbiol. , vol.45 , pp. 1231-1243
    • Leroy, A.1    Vanzo, N.F.2    Sousa, S.3    Dreyfus, M.4    Carpousis, A.J.5
  • 26
    • 84880133416 scopus 로고    scopus 로고
    • Determinants in the rpsT mRNAs recognized by the 5-sensor domain of RNase e
    • Mackie, G. A. (2013) Determinants in the rpsT mRNAs recognized by the 5-sensor domain of RNase E. Mol. Microbiol., 89, 388-402.
    • (2013) Mol. Microbiol. , vol.89 , pp. 388-402
    • Mackie, G.A.1
  • 28
    • 36849032886 scopus 로고    scopus 로고
    • Sensing of 5-monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo
    • Jourdan, S. S. And McDowall, K. J. (2008) Sensing of 5-monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo. Mol. Microbiol., 67, 102-115.
    • (2008) Mol. Microbiol. , vol.67 , pp. 102-115
    • Jourdan, S.S.1    McDowall, K.J.2
  • 30
    • 0019476056 scopus 로고
    • Inactivation of the ribonucleic acid-processing enzyme ribonuclease e blocks cell division
    • Goldblum, K. And Apririon, D. (1981) Inactivation of the ribonucleic acid-processing enzyme ribonuclease E blocks cell division. J. Bacteriol., 146, 128-132.
    • (1981) J. Bacteriol. , vol.146 , pp. 128-132
    • Goldblum, K.1    Apririon, D.2
  • 31
    • 0018956590 scopus 로고
    • Analysis of gene control signals by DNA fusion and cloning in Escherichia coli
    • Casadaban, M. J. And Cohen, S. N. (1980) Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J. Mol. Biol., 138, 179-207.
    • (1980) J. Mol. Biol. , vol.138 , pp. 179-207
    • Casadaban, M.J.1    Cohen, S.N.2
  • 32
    • 0035018365 scopus 로고    scopus 로고
    • Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli
    • Umitsuki, G., Wachi, M., Takada, A., Hikichi, T. And Nagai, K. (2001) Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli. Genes Cells, 6, 403-410.
    • (2001) Genes Cells , vol.6 , pp. 403-410
    • Umitsuki, G.1    Wachi, M.2    Takada, A.3    Hikichi, T.4    Nagai, K.5
  • 34
    • 0027391014 scopus 로고
    • Analysis of messenger RNA decay and ribosomal RNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III
    • Babitzke, P., Granger, L., Olszewski, J. And Kushner, S. R. (1993) Analysis of messenger RNA decay and ribosomal RNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III. J. Bacteriol., 175, 229-239.
    • (1993) J. Bacteriol. , vol.175 , pp. 229-239
    • Babitzke, P.1    Granger, L.2    Olszewski, J.3    Kushner, S.R.4
  • 35
    • 0033532514 scopus 로고    scopus 로고
    • Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5-end of 16S rRNA
    • Wachi, M., Umitsuki, G., Shimizu, M., Takada, A. And Nagai, K. (1999) Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5-end of 16S rRNA. Biochem. Biophys. Res. Commun., 259, 483-488.
    • (1999) Biochem. Biophys. Res. Commun. , vol.259 , pp. 483-488
    • Wachi, M.1    Umitsuki, G.2    Shimizu, M.3    Takada, A.4    Nagai, K.5
  • 36
    • 84885410721 scopus 로고    scopus 로고
    • A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease
    • Lin, Y. F., A, D. R., Guan, S., Mamanova, L. And McDowall, K. J. (2013) A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease. BMC Genomics, 14, 620.
    • (2013) BMC Genomics , vol.14 , pp. 620
    • Lin, Y.F.1    Guan, S.2    Mamanova, L.3    McDowall, K.J.4
  • 37
    • 0242666860 scopus 로고    scopus 로고
    • Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease e and the identification of critical functional groups in RNA substrates
    • Redko, Y., Tock, M. R., Adams, C. J., Kaberdin, V. R., Grasby, J. A. And McDowall, K. J. (2003) Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates. J. Biol. Chem., 278, 44001-44008.
    • (2003) J. Biol. Chem. , vol.278 , pp. 44001-44008
    • Redko, Y.1    Tock, M.R.2    Adams, C.J.3    Kaberdin, V.R.4    Grasby, J.A.5    McDowall, K.J.6
  • 38
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation identifies functional interrelationships with RNase e in Escherichia coli
    • Lee, K., Bernstein, J. A. And Cohen, S. N. (2002) RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol., 43, 1445-1456.
    • (2002) Mol. Microbiol. , vol.43 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.A.2    Cohen, S.N.3
  • 39
    • 0042665928 scopus 로고    scopus 로고
    • RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase e
    • Ow, M. C., Perwez, T. And Kushner, S. R. (2003) RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol. Microbiol., 49, 607-622.
    • (2003) Mol. Microbiol. , vol.49 , pp. 607-622
    • Ow, M.C.1    Perwez, T.2    Kushner, S.R.3
  • 41
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase e are both required for the 5-maturation of 16S ribosomal RNA
    • Li, Z. W., Pandit, S. And Deutscher, M. P. (1999) RNase G (CafA protein) and RNase E are both required for the 5-maturation of 16S ribosomal RNA. EMBO J., 18, 2878-2885.
    • (1999) EMBO J. , vol.18 , pp. 2878-2885
    • Li, Z.W.1    Pandit, S.2    Deutscher, M.P.3
  • 42
    • 84898951647 scopus 로고    scopus 로고
    • The CafA protein (RNase G) together with RNase e is required for the maturation of 16S rRNA in Escherichia coli
    • Li, Z., Pandit, S. And Deutscher, M. P. (1999) The CafA protein (RNase G) together with RNase E is required for the maturation of 16S rRNA in Escherichia coli. FASEB J., 13, A1410.
    • (1999) FASEB J. , vol.13 , pp. A1410
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 43
    • 0032569032 scopus 로고    scopus 로고
    • Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes
    • Coburn, G. A. And Mackie, G. A. (1998) Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes. J. Mol. Biol., 279, 1061-1074.
    • (1998) J. Mol. Biol. , vol.279 , pp. 1061-1074
    • Coburn, G.A.1    Mackie, G.A.2
  • 44
    • 0018034154 scopus 로고
    • Structural analysis and in vitro processing to p5 ribosomal RNA of a 9S RNA molecule isolated from an rne mutant of Escherichia coli
    • Ghora, B. K. And Apirion, D. (1978) Structural analysis and in vitro processing to p5 ribosomal RNA of a 9S RNA molecule isolated from an rne mutant of Escherichia coli. Cell, 15, 1055-1066.
    • (1978) Cell , vol.15 , pp. 1055-1066
    • Ghora, B.K.1    Apirion, D.2
  • 45
    • 0036210631 scopus 로고    scopus 로고
    • RNase e plays an essential role in the maturation of Escherichia coli tRNA precursors
    • Li, Z. W. And Deutscher, M. P. (2002) RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. RNA, 8, 97-109.
    • (2002) RNA , vol.8 , pp. 97-109
    • Li, Z.W.1    Deutscher, M.P.2
  • 46
    • 23844461149 scopus 로고    scopus 로고
    • Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1, 6-bisphosphate aldolase in Escherichia coli
    • Bardey, V., Vallet, C., Robas, N., Charpentier, B., Thouvenot, B., Mougin, A., Hajnsdorf, E., Regnier, P., Springer, M. And Branlant, C. (2005) Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1, 6-bisphosphate aldolase in Escherichia coli. Mol. Microbiol., 57, 1265-1287.
    • (2005) Mol. Microbiol. , vol.57 , pp. 1265-1287
    • Bardey, V.1    Vallet, C.2    Robas, N.3    Charpentier, B.4    Thouvenot, B.5    Mougin, A.6    Hajnsdorf, E.7    Regnier, P.8    Springer, M.9    Branlant, C.10
  • 47
    • 0027373140 scopus 로고
    • Selective decay of Escherichia coli dnaG messenger RNA is initiated by RNase e
    • Yajnik, V. And Godson, G. N. (1993) Selective decay of Escherichia coli dnaG messenger RNA is initiated by RNase E. J. Biol. Chem., 268, 13253-13260.
    • (1993) J. Biol. Chem. , vol.268 , pp. 13253-13260
    • Yajnik, V.1    Godson, G.N.2
  • 48
    • 11344264898 scopus 로고    scopus 로고
    • Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases
    • Kim, K. S. And Lee, Y. (2004) Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases. Nucleic Acids Res., 32, 6057-6068.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6057-6068
    • Kim, K.S.1    Lee, Y.2
  • 49
    • 0033607239 scopus 로고    scopus 로고
    • RNase e is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
    • Lin-Chao, S., Wei, C. L. And Lin, Y. T. (1999) RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc. Natl. Acad. Sci. U. S. A., 96, 12406-12411.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 12406-12411
    • Lin-Chao, S.1    Wei, C.L.2    Lin, Y.T.3
  • 50
    • 0042497078 scopus 로고    scopus 로고
    • RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli
    • Kaga, N., Umitsuki, G., Nagai, K. And Wachi, M. (2002) RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli. Biosci. Biotechnol. Biochem., 66, 2216-2220.
    • (2002) Biosci. Biotechnol. Biochem. , vol.66 , pp. 2216-2220
    • Kaga, N.1    Umitsuki, G.2    Nagai, K.3    Wachi, M.4
  • 51
    • 0029945236 scopus 로고    scopus 로고
    • Translation of the adhE transcript to produce ethanol dehydrogenase requires RNase III cleavage in Escherichia coli
    • Aristarkhov, A., Mikulskis, A., Belasco, J. G. And Lin, E. C. C. (1996) Translation of the adhE transcript to produce ethanol dehydrogenase requires RNase III cleavage in Escherichia coli. J. Bacteriol., 178, 4327-4332.
    • (1996) J. Bacteriol. , vol.178 , pp. 4327-4332
    • Aristarkhov, A.1    Mikulskis, A.2    Belasco, J.G.3    Lin, E.C.C.4
  • 52
    • 84892172582 scopus 로고    scopus 로고
    • A secondary structure in the 5-untranslated region of adhE mRNA required for RNase G-dependent regulation
    • Ito, K., Hamasaki, K., Kayamori, A., Nguyen, P. A., Amagai, K. And Wachi, M. (2013) A secondary structure in the 5-untranslated region of adhE mRNA required for RNase G-dependent regulation. Biosci. Biotechnol. Biochem., 77, 2473-2479.
    • (2013) Biosci. Biotechnol. Biochem. , vol.77 , pp. 2473-2479
    • Ito, K.1    Hamasaki, K.2    Kayamori, A.3    Nguyen, P.A.4    Amagai, K.5    Wachi, M.6
  • 53
    • 0026492668 scopus 로고
    • Control of RNase E-mediated RNA degradation by 5-terminal base-pairing in Escherichia coli
    • Bouvet, P. And Belasco, J. G. (1992) Control of RNase E-mediated RNA degradation by 5-terminal base-pairing in Escherichia coli. Nature, 360, 488-491.
    • (1992) Nature , vol.360 , pp. 488-491
    • Bouvet, P.1    Belasco, J.G.2
  • 55
    • 77349104885 scopus 로고    scopus 로고
    • Reprogramming of anaerobic metabolism by the FnrS small RNA
    • Durand, S. And Storz, G. (2010) Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol. Microbiol., 75, 1215-1231.
    • (2010) Mol. Microbiol. , vol.75 , pp. 1215-1231
    • Durand, S.1    Storz, G.2
  • 56
    • 77349101808 scopus 로고    scopus 로고
    • Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli
    • Boysen, A., Moller-Jensen, J., Kallipolitis, B., Valentin-Hansen, P. And Overgaard, M. (2010) Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli. J. Biol. Chem., 285, 10690-10702.
    • (2010) J. Biol. Chem. , vol.285 , pp. 10690-10702
    • Boysen, A.1    Moller-Jensen, J.2    Kallipolitis, B.3    Valentin-Hansen, P.4    Overgaard, M.5
  • 57
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U., Wang, Z., Waern, K., Shou, C., Raha, D., Gerstein, M. And Snyder, M. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 320, 1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 60
    • 34548098683 scopus 로고    scopus 로고
    • The end defines the means in bacterial mRNA decay
    • Schoenberg, D. R. (2007) The end defines the means in bacterial mRNA decay. Nat. Chem. Biol., 3, 535-536.
    • (2007) Nat. Chem. Biol. , vol.3 , pp. 535-536
    • Schoenberg, D.R.1
  • 61
    • 0037221712 scopus 로고    scopus 로고
    • Ectopic RNase e sites promote bypass of 5-end-dependent mRNA decay in Escherichia coli
    • Baker, K. E. And Mackie, G. A. (2003) Ectopic RNase E sites promote bypass of 5-end-dependent mRNA decay in Escherichia coli. Mol. Microbiol., 47, 75-88.
    • (2003) Mol. Microbiol. , vol.47 , pp. 75-88
    • Baker, K.E.1    Mackie, G.A.2
  • 62
    • 55349119169 scopus 로고    scopus 로고
    • Mutants of the RNA-processing enzyme RNase e reverse the extreme slow-growth phenotype caused by a mutant translation factor EF-Tu
    • Hammarlof, D. L. And Hughes, D. (2008) Mutants of the RNA-processing enzyme RNase E reverse the extreme slow-growth phenotype caused by a mutant translation factor EF-Tu. Mol. Microbiol., 70, 1194-1209.
    • (2008) Mol. Microbiol. , vol.70 , pp. 1194-1209
    • Hammarlof, D.L.1    Hughes, D.2
  • 63
    • 0032544304 scopus 로고    scopus 로고
    • In the absence of translation, RNase e can bypass 5-mRNA stabilizers in Escherichia coli
    • Joyce, S. A. And Dreyfus, M. (1998) In the absence of translation, RNase E can bypass 5-mRNA stabilizers in Escherichia coli. J. Mol. Biol., 282, 241-254.
    • (1998) J. Mol. Biol. , vol.282 , pp. 241-254
    • Joyce, S.A.1    Dreyfus, M.2
  • 64
    • 0037069357 scopus 로고    scopus 로고
    • The catalytic domain of RNase e shows inherent 3 -to 5 -directionality in cleavage site selection
    • Feng, Y. A., Vickers, T. A. And Cohen, S. N. (2002) The catalytic domain of RNase E shows inherent 3 -to 5 -directionality in cleavage site selection. Proc. Natl. Acad. Sci. U. S. A., 99, 14746-14751.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 14746-14751
    • Feng, Y.A.1    Vickers, T.A.2    Cohen, S.N.3
  • 65
    • 0242395917 scopus 로고    scopus 로고
    • Probing the substrate specificity of Escherichia coli RNase e using a novel oligonucleotide-based assay
    • Kaberdin, V. R. (2003) Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay. Nucleic Acids Res., 31, 4710-4716.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4710-4716
    • Kaberdin, V.R.1
  • 66
    • 72949110938 scopus 로고    scopus 로고
    • The sequence of sites recognised by a member of the RNase E/G family can control the maximal rate of cleavage, while a 5-monophosphorylated end appears to function cooperatively in mediating RNA binding
    • Jourdan, S. S., Kime, L. And McDowall, K. J. (2010) The sequence of sites recognised by a member of the RNase E/G family can control the maximal rate of cleavage, while a 5-monophosphorylated end appears to function cooperatively in mediating RNA binding. Biochem. Biophys. Res. Commun., 391, 879-883.
    • (2010) Biochem. Biophys. Res. Commun. , vol.391 , pp. 879-883
    • Jourdan, S.S.1    Kime, L.2    McDowall, K.J.3
  • 67
    • 0033048415 scopus 로고    scopus 로고
    • The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
    • Lopez, P. J., Marchand, I., Joyce, S. A. And Dreyfus, M. (1999) The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol. Microbiol., 33, 188-199.
    • (1999) Mol. Microbiol. , vol.33 , pp. 188-199
    • Lopez, P.J.1    Marchand, I.2    Joyce, S.A.3    Dreyfus, M.4
  • 68
    • 0033636189 scopus 로고    scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
    • Ow, M. C., Liu, Q. And Kushner, S. R. (2000) Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol. Microbiol., 38, 854-866.
    • (2000) Mol. Microbiol. , vol.38 , pp. 854-866
    • Ow, M.C.1    Liu, Q.2    Kushner, S.R.3
  • 69
    • 0025826583 scopus 로고
    • Location of the RNA processing enzymes RNase III, RNase e and RNase P in the Escherichia coli cell
    • Miczak, A., Srivastava, R. A. K. And Apirion, D. (1991) Location of the RNA processing enzymes RNase III, RNase E and RNase P in the Escherichia coli cell. Mol. Microbiol., 5, 1801-1810.
    • (1991) Mol. Microbiol. , vol.5 , pp. 1801-1810
    • Miczak, A.1    Srivastava, R.A.K.2    Apirion, D.3
  • 71
    • 83355169557 scopus 로고    scopus 로고
    • Two pathways for RNase e action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination
    • Anupama, K., Leela, J. K. And Gowrishankar, J. (2011) Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. Mol. Microbiol., 82, 1330-1348.
    • (2011) Mol. Microbiol. , vol.82 , pp. 1330-1348
    • Anupama, K.1    Leela, J.K.2    Gowrishankar, J.3
  • 73
    • 84904266068 scopus 로고    scopus 로고
    • An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3
    • Schifano, J. M., Vvedenskaya, I. O., Knoblauch, J. G., Ouyang, M., Nickels, B. E. And Woychik, N. A. (2014) An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3. Nat. Commun., 5, 3538.
    • (2014) Nat. Commun. , vol.5 , pp. 3538
    • Schifano, J.M.1    Vvedenskaya, I.O.2    Knoblauch, J.G.3    Ouyang, M.4    Nickels, B.E.5    Woychik, N.A.6
  • 74
    • 80053563668 scopus 로고    scopus 로고
    • Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli
    • Vesper, O., Amitai, S., Belitsky, M., Byrgazov, K., Kaberdina, A. C., Engelberg-Kulka, H. And Moll, I. (2011) Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli. Cell, 147, 147-157.
    • (2011) Cell , vol.147 , pp. 147-157
    • Vesper, O.1    Amitai, S.2    Belitsky, M.3    Byrgazov, K.4    Kaberdina, A.C.5    Engelberg-Kulka, H.6    Moll, I.7


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