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Volumn 49, Issue 3, 2003, Pages 607-622

RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBONUCLEASE; RIBONUCLEASE E; RIBONUCLEASE G; RIBOSOME RNA; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 0042665928     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2003.03587.x     Document Type: Article
Times cited : (62)

References (47)
  • 1
    • 0017887243 scopus 로고
    • A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA
    • Apirion, D., and Lassar, A.B. (1978) A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA. J Biol Chem 253: 1738-1742.
    • (1978) J Biol Chem , vol.253 , pp. 1738-1742
    • Apirion, D.1    Lassar, A.B.2
  • 2
    • 0029945236 scopus 로고    scopus 로고
    • Translation of the adhE transcript to produce ethanol dehydrogenase requires RNase III cleavage in Escherichia coli
    • Aristarkhov, A., Mikulskis, A., Belasco, J.G., and Lin, E.C. (1996) Translation of the adhE transcript to produce ethanol dehydrogenase requires RNase III cleavage in Escherichia coli. J Bacteriol 178: 4327-4332.
    • (1996) J Bacteriol , vol.178 , pp. 4327-4332
    • Aristarkhov, A.1    Mikulskis, A.2    Belasco, J.G.3    Lin, E.C.4
  • 3
    • 0027537040 scopus 로고
    • Identification of endonucleolytic cleavage sites involved in decay of Escherichia coli trxA mRNA
    • Arraiano, C.M., Yancey, S.D., and Kushner, S.R. (1993) Identification of endonucleolytic cleavage sites involved in decay of Escherichia coli trxA mRNA. J Bacteriol 175: 1043-1052.
    • (1993) J Bacteriol , vol.175 , pp. 1043-1052
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 4
    • 0031547957 scopus 로고    scopus 로고
    • Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: Evidence for multiple degradation pathways
    • Arraiano, C.M., Cruz, A.A., and Kushner, S.R. (1997) Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: Evidence for multiple degradation pathways. J Mol Biol 268: 261-272.
    • (1997) J Mol Biol , vol.268 , pp. 261-272
    • Arraiano, C.M.1    Cruz, A.A.2    Kushner, S.R.3
  • 5
    • 0024095739 scopus 로고
    • Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
    • Arraiano, C.M., Yancey, S.D., and Kushner, S.R. (1988) Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J Bacteriol 170: 4625-4633.
    • (1988) J Bacteriol , vol.170 , pp. 4625-4633
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 6
    • 0027391014 scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III
    • Babitzke, P., Granger, L., and Kushner, S.R. (1993) Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III. J Bacteriol 175: 229-239.
    • (1993) J Bacteriol , vol.175 , pp. 229-239
    • Babitzke, P.1    Granger, L.2    Kushner, S.R.3
  • 7
    • 0030891309 scopus 로고    scopus 로고
    • Northern blotting of RNA denatured in glyoxal without buffer recirculation
    • Burnett, W.V. (1997) Northern blotting of RNA denatured in glyoxal without buffer recirculation. Biotechn 22: 668-671.
    • (1997) Biotechn , vol.22 , pp. 668-671
    • Burnett, W.V.1
  • 8
    • 0024669472 scopus 로고
    • Purification and characterization of ribonuclease M and mRNA degradation in Escherichia coli
    • Cannistraro, V.J., and Kennell, D. (1989) Purification and characterization of ribonuclease M and mRNA degradation in Escherichia coli. Eur J Biochem 181: 363-370.
    • (1989) Eur J Biochem , vol.181 , pp. 363-370
    • Cannistraro, V.J.1    Kennell, D.2
  • 9
    • 0027528568 scopus 로고
    • The 5′ ends of RNA oligonucleotides in Escherichia coli and mRNA degradation
    • Cannistraro, V.J., and Kennell, D. (1993) The 5′ ends of RNA oligonucleotides in Escherichia coli and mRNA degradation. Eur J Biochem 213: 285-293.
    • (1993) Eur J Biochem , vol.213 , pp. 285-293
    • Cannistraro, V.J.1    Kennell, D.2
  • 10
    • 0024463462 scopus 로고
    • Cloning of the altered mRNA stability (ams) gene of Escherichia coli K-12
    • Claverie-Martin, F., Diaz-Torres, M.R., Yancey, S.D., and Kushner, S.R. (1989) Cloning of the altered mRNA stability (ams) gene of Escherichia coli K-12. J Bacteriol 171: 5479-5486.
    • (1989) J Bacteriol , vol.171 , pp. 5479-5486
    • Claverie-Martin, F.1    Diaz-Torres, M.R.2    Yancey, S.D.3    Kushner, S.R.4
  • 11
    • 0032569032 scopus 로고    scopus 로고
    • Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes
    • Coburn, G.A., and Mackie, G.A. (1998) Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes. J Mol Biol 279: 1061-1074.
    • (1998) J Mol Biol , vol.279 , pp. 1061-1074
    • Coburn, G.A.1    Mackie, G.A.2
  • 12
    • 0033214259 scopus 로고    scopus 로고
    • Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase
    • Coburn, G.A., Miao, X., Briant, D.J., and Mackie, G.A. (1999) Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase. Genes Dev 13: 2594-2603.
    • (1999) Genes Dev , vol.13 , pp. 2594-2603
    • Coburn, G.A.1    Miao, X.2    Briant, D.J.3    Mackie, G.A.4
  • 13
    • 0018949596 scopus 로고
    • Construction of an Hfr strain useful for transferring recA mutations between Escherichia coli strains
    • Csonka, L.N., and Clark, A.J. (1980) Construction of an Hfr strain useful for transferring recA mutations between Escherichia coli strains. J Bacteriol 143: 529-530.
    • (1980) J Bacteriol , vol.143 , pp. 529-530
    • Csonka, L.N.1    Clark, A.J.2
  • 14
    • 0018034154 scopus 로고
    • Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli
    • Ghora, B.K., and Apirion, D. (1978) Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli. Cell 15: 1055-1066.
    • (1978) Cell , vol.15 , pp. 1055-1066
    • Ghora, B.K.1    Apirion, D.2
  • 15
    • 0019158864 scopus 로고
    • The synthesis of some proteins is affected in RNA processing mutants of Escherichia coli
    • Gitelman, D.R., and Apirion, D. (1980) The synthesis of some proteins is affected in RNA processing mutants of Escherichia coli. Biochem Biophys Res Commun 96: 1063-1070.
    • (1980) Biochem Biophys Res Commun , vol.96 , pp. 1063-1070
    • Gitelman, D.R.1    Apirion, D.2
  • 16
    • 0029825005 scopus 로고    scopus 로고
    • Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5′ and 3′ extremities of the primary transcript
    • Hajnsdorf, E., Braun, F., Haugel-Nielsen, J., Le Derout, J., and Régnier, P. (1996) Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5′ and 3′ extremities of the primary transcript. Biochimie 78: 416-424.
    • (1996) Biochimie , vol.78 , pp. 416-424
    • Hajnsdorf, E.1    Braun, F.2    Haugel-Nielsen, J.3    Le Derout, J.4    Régnier, P.5
  • 17
    • 0034005317 scopus 로고    scopus 로고
    • Regions of RNase E important for 5′end-dependent RNA cleavage and autoregulated synthesis
    • Jiang, X., Diwa, A., and Belasco, J.G. (2000) Regions of RNase E important for 5′end-dependent RNA cleavage and autoregulated synthesis. J Bacteriol 182: 2468-2475.
    • (2000) J Bacteriol , vol.182 , pp. 2468-2475
    • Jiang, X.1    Diwa, A.2    Belasco, J.G.3
  • 18
    • 0042497078 scopus 로고    scopus 로고
    • RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli
    • Kaga, N., Umitsuki, G., Nagai, K., and Wachi, M. (2002) RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli. Bioscience Biotechn Biochem 66: 2216-2220.
    • (2002) Bioscience Biotechn Biochem , vol.66 , pp. 2216-2220
    • Kaga, N.1    Umitsuki, G.2    Nagai, K.3    Wachi, M.4
  • 19
    • 0036719292 scopus 로고    scopus 로고
    • mRNA decay in Escherichia coli comes of age
    • Kushner, S.R. (2002) mRNA decay in Escherichia coli comes of age. J Bacteriol 184: 4658-4665.
    • (2002) J Bacteriol , vol.184 , pp. 4658-4665
    • Kushner, S.R.1
  • 20
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation indentified functional interrelationships with RNase E in Escherichia coli
    • Lee, K., Bernstein, J.A., and Cohen, S.N. (2002) RNase G complementation of rne null mutation indentified functional interrelationships with RNase E in Escherichia coli. Mol Microbio 43: 1445-1456.
    • (2002) Mol Microbio , vol.43 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.A.2    Cohen, S.N.3
  • 21
    • 0036210631 scopus 로고    scopus 로고
    • RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors
    • Li, Z., and Deutscher, M.P. (2002) RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. RNA 8: 97-109.
    • (2002) RNA , vol.8 , pp. 97-109
    • Li, Z.1    Deutscher, M.P.2
  • 22
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA
    • Li, Z., Pandit, S., and Deutscher, M.P. (1999) RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA. EMBO J 18: 2878-2885.
    • (1999) EMBO J , vol.18 , pp. 2878-2885
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 23
    • 0033048415 scopus 로고    scopus 로고
    • The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
    • Lopez, P.J., Marchand, I., Joyce, S.A., and Dreyfus, M. (1999) The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol Microbiol 33: 188-199.
    • (1999) Mol Microbiol , vol.33 , pp. 188-199
    • Lopez, P.J.1    Marchand, I.2    Joyce, S.A.3    Dreyfus, M.4
  • 24
    • 0029295957 scopus 로고
    • Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli
    • Lundberg, U., and Altman, S. (1995) Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA 1: 327-334.
    • (1995) RNA , vol.1 , pp. 327-334
    • Lundberg, U.1    Altman, S.2
  • 25
    • 0025796969 scopus 로고
    • Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the products of the ams gene in vivo and in vitro
    • Mackie, G.A. (1991) Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the products of the ams gene/n vivo and in vitro. J Bacteriol 173: 2488-2497.
    • (1991) J Bacteriol , vol.173 , pp. 2488-2497
    • Mackie, G.A.1
  • 26
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease E is a 5′-end-dependent endonuclease
    • Mackie, G.A. (1998) Ribonuclease E is a 5′-end-dependent endonuclease. Nature 395: 720-723.
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.A.1
  • 27
    • 0034682733 scopus 로고    scopus 로고
    • Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo
    • Mackie, G.A. (2000) Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo. J Biol Chem 275: 25069-25072.
    • (2000) J Biol Chem , vol.275 , pp. 25069-25072
    • Mackie, G.A.1
  • 28
    • 0027273009 scopus 로고
    • The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli rne locus
    • McDowall, K.J., Hernandez, R.G., Lin-Chao, S., and Cohen, S.N. (1993) The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli rne locus. J Bacteriol 175: 4245-4249.
    • (1993) J Bacteriol , vol.175 , pp. 4245-4249
    • McDowall, K.J.1    Hernandez, R.G.2    Lin-Chao, S.3    Cohen, S.N.4
  • 29
    • 0033457296 scopus 로고    scopus 로고
    • Analysis of the function of Escherichia coli poly (A) polymerase I in RNA metabolism
    • Mohanty, B.K., and Kushner, S.R. (1999) Analysis of the function of Escherichia coli poly (A) polymerase I in RNA metabolism. Mol Microbiol 34: 1094-1108.
    • (1999) Mol Microbiol , vol.34 , pp. 1094-1108
    • Mohanty, B.K.1    Kushner, S.R.2
  • 30
    • 0027250040 scopus 로고
    • Escherichia coli endoribonuclease RNase E: Autoregulation of expression and site-specific cleavage of mRNA
    • Mudd, E.A., and Higgins, C.F. (1993) Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA. Mol Microbiol 3: 557-568.
    • (1993) Mol Microbiol , vol.3 , pp. 557-568
    • Mudd, E.A.1    Higgins, C.F.2
  • 32
    • 0027955358 scopus 로고
    • Cytoplasmic axial filaments in Escherichia coli cells: Possible function in the mechanism of chromosome segregation and cell division
    • Okada, Y., Wachi, M., Hirata, A., Suzuki, K., Nagai, K., and Matsuhashi, M. (1994) Cytoplasmic axial filaments in Escherichia coli cells: possible function in the mechanism of chromosome segregation and cell division. J Bacteriol 176: 917-922.
    • (1994) J Bacteriol , vol.176 , pp. 917-922
    • Okada, Y.1    Wachi, M.2    Hirata, A.3    Suzuki, K.4    Nagai, K.5    Matsuhashi, M.6
  • 33
    • 0018791193 scopus 로고
    • A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of mRNA
    • Ono, M., and Kuwano, M. (1979) A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of mRNA. J Mol Biol 129: 343-357.
    • (1979) J Mol Biol , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 34
    • 0036571060 scopus 로고    scopus 로고
    • Intitiation of tRNA maturation by RNase E is essential for cell viability in Escherichia coli
    • Ow, M.C., and Kushner, S.R. (2002) Intitiation of tRNA maturation by RNase E is essential for cell viability in Escherichia coli. Genes Dev 16: 1102-1115.
    • (2002) Genes Dev , vol.16 , pp. 1102-1115
    • Ow, M.C.1    Kushner, S.R.2
  • 35
    • 0033636189 scopus 로고    scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
    • Ow, M.C., Liu, Q., and Kushner, S.R. (2000) Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol Microbiol 38: 854-866.
    • (2000) Mol Microbiol , vol.38 , pp. 854-866
    • Ow, M.C.1    Liu, Q.2    Kushner, S.R.3
  • 36
    • 0036197752 scopus 로고    scopus 로고
    • RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters
    • Ow, M.C., Liu, Q., Mohanty, B.K., Andrew, M.E., Maples, V.F., and Kushner, S.R. (2002) RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters. Mol Microbiol 43: 159-171.
    • (2002) Mol Microbiol , vol.43 , pp. 159-171
    • Ow, M.C.1    Liu, Q.2    Mohanty, B.K.3    Andrew, M.E.4    Maples, V.F.5    Kushner, S.R.6
  • 37
    • 0019515477 scopus 로고
    • Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E
    • Ray, B.K., and Apirion, D. (1981a) Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E. Eur J Biochem 114: 517-524.
    • (1981) Eur J Biochem , vol.114 , pp. 517-524
    • Ray, B.K.1    Apirion, D.2
  • 38
    • 0019373830 scopus 로고
    • RNAase P is dependent on RNAase E action in processing monomeric RNA precursors that accumulate in an RNAase E- mutant of Escherichia coli
    • Ray, B.K., and Apirion, D. (1981b) RNAase P is dependent on RNAase E action in processing monomeric RNA precursors that accumulate in an RNAase E- mutant of Escherichia coli. J Mol Biol 149: 599-617.
    • (1981) J Mol Biol , vol.149 , pp. 599-617
    • Ray, B.K.1    Apirion, D.2
  • 40
    • 0035678489 scopus 로고    scopus 로고
    • Escherichia coli RNase M is a multiply altered form of RNase I
    • Subbarayan, P.R., and Deutscher, M.P. (2002) Escherichia coli RNase M is a multiply altered form of RNase I. RNA 7: 1702-1707.
    • (2002) RNA , vol.7 , pp. 1702-1707
    • Subbarayan, P.R.1    Deutscher, M.P.2
  • 41
    • 0034708447 scopus 로고    scopus 로고
    • The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′- end-dependent ribonuclease that has context-dependent broad sequence specificity
    • Tock, M.R., Walsh, A.P., Carroll, G., and McDowall, K.J. (2000) The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′- end-dependent ribonuclease that has context-dependent broad sequence specificity. J Biol Chem 275: 8726-8732.
    • (2000) J Biol Chem , vol.275 , pp. 8726-8732
    • Tock, M.R.1    Walsh, A.P.2    Carroll, G.3    McDowall, K.J.4
  • 42
    • 0035018365 scopus 로고    scopus 로고
    • Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli
    • Umitsuki, G., Wachi, M., Takada, A., Hikichi, T., and Nagia, K. (2001) Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli. Genes Cells 6: 403-410.
    • (2001) Genes Cells , vol.6 , pp. 403-410
    • Umitsuki, G.1    Wachi, M.2    Takada, A.3    Hikichi, T.4    Nagia, K.5
  • 43
    • 0031020242 scopus 로고    scopus 로고
    • Functional relationship between Escherichia coli RNase E and the CafA protein
    • Wachi, M., Umitsuki, G., and Nagai, K. (1997) Functional relationship between Escherichia coli RNase E and the CafA protein. Mol Gen Genet 253: 515-519.
    • (1997) Mol Gen Genet , vol.253 , pp. 515-519
    • Wachi, M.1    Umitsuki, G.2    Nagai, K.3
  • 44
    • 0033532514 scopus 로고    scopus 로고
    • Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5′ end of 16S rRNA
    • Wachi, M., Umitsuki, G., Shimizu, M., Takada, A., and Nagai, K. (1999) Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5′ end of 16S rRNA. Biochem Biophys Res Commun 259: 483-488.
    • (1999) Biochem Biophys Res Commun , vol.259 , pp. 483-488
    • Wachi, M.1    Umitsuki, G.2    Shimizu, M.3    Takada, A.4    Nagai, K.5
  • 45
    • 0035931008 scopus 로고    scopus 로고
    • A novel RNase G mutant that is defective in degradation of adhE mRNA but proficient in the processing of 16S rRNA precursor
    • Wachi, M., Naoko, K., Umitsuki, G., Clarke, D.P., and Nagai, K. (2001) A novel RNase G mutant that is defective in degradation of adhE mRNA but proficient in the processing of 16S rRNA precursor. Biochem Biophys Res Commun 289: 1301-1306.
    • (2001) Biochem Biophys Res Commun , vol.289 , pp. 1301-1306
    • Wachi, M.1    Naoko, K.2    Umitsuki, G.3    Clarke, D.P.4    Nagai, K.5
  • 46
    • 0025782890 scopus 로고
    • Construction of versatile low-copy-number vectors for cloning, sequencing and expression in Escherichia coli
    • Wang, R.F., and Kushner, S.R. (1991) Construction of versatile low-copy-number vectors for cloning, sequencing and expression in Escherichia coli. Gene 100: 195-199.
    • (1991) Gene , vol.100 , pp. 195-199
    • Wang, R.F.1    Kushner, S.R.2
  • 47
    • 0025601902 scopus 로고
    • Isolation and characterization of a new temperature-sensitive polynucleotide phosphorylase mutation in Escherichia coli K-12
    • Yancey, S.D., and Kushner, S.R. (1990) Isolation and characterization of a new temperature-sensitive polynucleotide phosphorylase mutation in Escherichia coli K-12. Biochimie 72: 835-843.
    • (1990) Biochimie , vol.72 , pp. 835-843
    • Yancey, S.D.1    Kushner, S.R.2


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