-
1
-
-
84876390765
-
Whole-genome regression and prediction methods applied to plant and animal breeding
-
de los Campos G, Hickey JM, Pong-Wong R, Daetwyler HD, Calus MPL: Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics 2013, 193:327-345.
-
(2013)
Genetics
, vol.193
, pp. 327-345
-
-
De Los Campos, G.1
Hickey, J.M.2
Pong-Wong, R.3
Daetwyler, H.D.4
Calus, M.P.L.5
-
2
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen THE, Hayes BJ, Goddard ME: Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
3
-
-
54449097329
-
Accuracy of predicting the genetic risk of disease using a genome-wide approach
-
Daetwyler HD, Villanueva B, Woolliams JA: Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS ONE 2008, 3:e3395.
-
(2008)
PLoS ONE
, vol.3
-
-
Daetwyler, H.D.1
Villanueva, B.2
Woolliams, J.A.3
-
4
-
-
33947194180
-
Graph embedding and extensions: A general framework for dimensionality reduction
-
Yan SC, Xu D, Zhang B.Y., Zhang HJ, Yang Q, Lin S: Graph embedding and extensions: A general framework for dimensionality reduction. IEEE Trans Pattern Anal Mach Intell 2007, 29:40-51.
-
(2007)
IEEE Trans Pattern Anal Mach Intell
, vol.29
, pp. 40-51
-
-
Yan, S.C.1
Xu, D.2
Zhang, B.Y.3
Zhang, H.J.4
Yang, Q.5
Lin, S.6
-
6
-
-
84920771795
-
A comparison of principal component regression and genomic REML for genomic prediction across populations
-
Dadousis C, Veerkamp RF, Heringstad B, Pszczola M., Calus MPL: A comparison of principal component regression and genomic REML for genomic prediction across populations. Genet Sel Evol, 46:60.
-
Genet Sel Evol
, vol.46
, pp. 60
-
-
Dadousis, C.1
Veerkamp, R.F.2
Heringstad, B.3
Pszczola, M.4
Calus, M.P.L.5
-
7
-
-
77949825022
-
Reducing dimensionality for prediction of genome-wide breeding values
-
Solberg TR, Sonesson AK, Woolliams J.A., Meuwissen THE: Reducing dimensionality for prediction of genome-wide breeding values. Genet Sel Evol 2009, 41:29.
-
(2009)
Genet Sel Evol
, vol.41
, pp. 29
-
-
Solberg, T.R.1
Sonesson, A.K.2
Woolliams, J.A.3
Meuwissen, T.H.E.4
-
8
-
-
84882711405
-
Accuracy of genomic breeding values in multibreed beef cattle populations derived from deregressed breeding values and phenotypes
-
Weber KL, Thallman RM, Keele J.W., Snelling WM, Bennett GL, Smith TPL, McDaneld TG, Allan MF, Van Eenennaam AL, Kuehn LA: Accuracy of genomic breeding values in multibreed beef cattle populations derived from deregressed breeding values and phenotypes. J Anim Sci 2012, 90:4177-4190.
-
(2012)
J Anim Sci
, vol.90
, pp. 4177-4190
-
-
Weber, K.L.1
Thallman, R.M.2
Keele, J.W.3
Snelling, W.M.4
Bennett, G.L.5
Smith, T.P.L.6
Mcdaneld, T.G.7
Allan, M.F.8
Van Eenennaam, A.L.9
Kuehn, L.A.10
-
9
-
-
84868651956
-
Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation
-
Daetwyler HD, Swan AA, van der Werf JHJ, Hayes BJ: Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation. Genet Sel Evol 2012, 44:33.
-
(2012)
Genet Sel Evol
, vol.44
, pp. 33
-
-
Daetwyler, H.D.1
Swan, A.A.2
Van Der Werf, J.H.J.3
Hayes, B.J.4
-
10
-
-
84872492144
-
Across breed multi-trait random regression genomic predictions in the nordic red dairy cattle
-
Makgahlela ML, Mantysaari EA, Stranden I, Koivula M., Nielsen US, Sillanpaa MJ, Juga J: Across breed multi-trait random regression genomic predictions in the Nordic Red dairy cattle. J Anim Breed Genet 2013, 130:10-19.
-
(2013)
J Anim Breed Genet
, vol.130
, pp. 10-19
-
-
Makgahlela, M.L.1
Mantysaari, E.A.2
Stranden, I.3
Koivula, M.4
Nielsen, U.S.5
Sillanpaa, M.J.6
Juga, J.7
-
11
-
-
84862511727
-
Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
-
Erbe M, Hayes BJ, Matukumalli L.K., Goswami S., Bowman PJ, Reich CM, Mason BA, Goddard ME: Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. J Dairy Sci 2012, 95:4114-4129.
-
(2012)
J Dairy Sci
, vol.95
, pp. 4114-4129
-
-
Erbe, M.1
Hayes, B.J.2
Matukumalli, L.K.3
Goswami, S.4
Bowman, P.J.5
Reich, C.M.6
Mason, B.A.7
Goddard, M.E.8
-
12
-
-
71549118527
-
Reliability of genomic predictions across multiple populations
-
De Roos APW, Hayes BJ, Goddard ME: Reliability of genomic predictions across multiple populations. Genetics 2009, 183:1545-1553.
-
(2009)
Genetics
, vol.183
, pp. 1545-1553
-
-
De Roos, A.P.W.1
Hayes, B.J.2
Goddard, M.E.3
-
13
-
-
35248821683
-
A short introduction to learning with kernels
-
Edited by Bousquet O, Rätsch G. Berlin: Springer-Verlag
-
Schölkopf B, Smola AJ: A short introduction to learning with kernels. In Advanced Lectures on Machine Learning. Edited by Bousquet O, Rätsch G. Berlin: Springer-Verlag; 2003:41-64.
-
(2003)
Advanced Lectures on Machine Learning
, pp. 41-64
-
-
Schölkopf, B.1
Smola, A.J.2
-
14
-
-
84872554275
-
Joint genomic evaluation of french dairy cattle breeds using multiple-trait models
-
Karoui S, Carabano MJ, Diaz C, Legarra A: Joint genomic evaluation of French dairy cattle breeds using multiple-trait models. Genet Sel Evol 2012, 44:39.
-
(2012)
Genet Sel Evol
, vol.44
, pp. 39
-
-
Karoui, S.1
Carabano, M.J.2
Diaz, C.3
Legarra, A.4
-
15
-
-
84898808306
-
Within- and across-breed genomic predictions and genomic relationships for western pyrenees dairy sheep breeds latxa, manech, and basco-béarnaise
-
Legarra A, Baloche G, Barillet F., Astruc JM, Soulas C, Aguerre X, Arrese F., Mintegi L, Lasarte M, Maeztu F, Beltrán de Heredia I, Ugarte E: Within- and across-breed genomic predictions and genomic relationships for Western Pyrenees dairy sheep breeds Latxa, Manech, and Basco-Béarnaise. J Dairy Sci 2014, 97:3200-3212.
-
(2014)
J Dairy Sci
, vol.97
, pp. 3200-3212
-
-
Legarra, A.1
Baloche, G.2
Barillet, F.3
Astruc, J.M.4
Soulas, C.5
Aguerre, X.6
Arrese, F.7
Mintegi, L.8
Lasarte, M.9
Maeztu, F.10
Beltrán De Heredia, I.11
Ugarte, E.12
-
16
-
-
84865312313
-
Multibreed genomic evaluations using purebred holsteins, jerseys, and brown swiss
-
Olson KM, VanRaden PM, Tooker ME: Multibreed genomic evaluations using purebred Holsteins, Jerseys, and Brown Swiss. J Dairy Sci 2012, 95:5378-5383.
-
(2012)
J Dairy Sci
, vol.95
, pp. 5378-5383
-
-
Olson, K.M.1
Vanraden, P.M.2
Tooker, M.E.3
-
17
-
-
45849117254
-
Reproducing kernel hilbert spaces regression methods for genomic assisted prediction of quantitative traits
-
Gianola D, van Kaam JBCHM: Reproducing kernel Hilbert spaces regression methods for genomic assisted prediction of quantitative traits. Genetics 2008, 178:2289-2303.
-
(2008)
Genetics
, vol.178
, pp. 2289-2303
-
-
Gianola, D.1
Van Kaam, J.B.C.H.M.2
-
18
-
-
84878817787
-
Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data
-
Morota G, Koyama M, Rosa GJM, Weigel KA, Gianola D: Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data. Genet Sel Evol 2013, 45:17.
-
(2013)
Genet Sel Evol
, vol.45
, pp. 17
-
-
Morota, G.1
Koyama, M.2
Rosa, G.J.M.3
Weigel, K.A.4
Gianola, D.5
-
19
-
-
77952554018
-
Supervised learning of local projection kernels
-
Gönen M, Alpaydin E: Supervised learning of local projection kernels. Neurocomputing 2010, 73:1694-1703.
-
(2010)
Neurocomputing
, vol.73
, pp. 1694-1703
-
-
Gönen, M.1
Alpaydin, E.2
-
20
-
-
84870238770
-
Localized algorithms for multiple kernel learning
-
Gönen M, Alpaydin E: Localized algorithms for multiple kernel learning. Pattern Recogn 2013, 46:795-807.
-
(2013)
Pattern Recogn
, vol.46
, pp. 795-807
-
-
Gönen, M.1
Alpaydin, E.2
-
21
-
-
77955397866
-
Local-learning-based feature selection for high-dimensional data analysis
-
Sun Y, Todorovic S, Goodison S: Local-learning-based feature selection for high-dimensional data analysis. IEEE Trans Pattern Anal Mach Intell 2010, 32:1610-1626.
-
(2010)
IEEE Trans Pattern Anal Mach Intell
, vol.32
, pp. 1610-1626
-
-
Sun, Y.1
Todorovic, S.2
Goodison, S.3
-
22
-
-
84908416757
-
Genomic prediction based on data from three layer lines: A comparison between linear methods
-
Calus MPL, Huang H, Vereijken A., Visscher J, Ten Napel J, Windig JJ: Genomic prediction based on data from three layer lines: a comparison between linear methods. Genet Sel Evol 2014, 46:57.
-
(2014)
Genet Sel Evol
, vol.46
, pp. 57
-
-
Calus, M.P.L.1
Huang, H.2
Vereijken, A.3
Visscher, J.4
Ten Napel, J.5
Windig, J.J.6
-
24
-
-
84876361750
-
Genomic prediction in animals and plants: Simulation of data, validation, reporting, and benchmarking
-
Daetwyler HD, Calus MPL, Pong-Wong R, de los Campos G, Hickey JM: Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics 2013, 193:347-365.
-
(2013)
Genetics
, vol.193
, pp. 347-365
-
-
Daetwyler, H.D.1
Calus, M.P.L.2
Pong-Wong, R.3
De Los Campos, G.4
Hickey, J.M.5
-
26
-
-
55849133422
-
Efficient methods to compute genomic predictions
-
VanRaden PM: Efficient methods to compute genomic predictions. J Dairy Sci 2008, 91:4414-4423.
-
(2008)
J Dairy Sci
, vol.91
, pp. 4414-4423
-
-
Vanraden, P.M.1
-
28
-
-
77949293856
-
Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of holstein final score
-
Aguilar I, Misztal I, Johnson D.L., Legarra A., Tsuruta S, Lawlor TJ: Hot topic: a unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score. J Dairy Sci 2010, 93:743-752.
-
(2010)
J Dairy Sci
, vol.93
, pp. 743-752
-
-
Aguilar, I.1
Misztal, I.2
Johnson, D.L.3
Legarra, A.4
Tsuruta, S.5
Lawlor, T.J.6
-
29
-
-
78951477718
-
Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel hilbert spaces methods
-
de los Campos G, Gianola D, Rosa GJM, Weigel KA, Crossa J: Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods. Genet Res 2010, 92:295-308.
-
(2010)
Genet Res
, vol.92
, pp. 295-308
-
-
De Los Campos, G.1
Gianola, D.2
Rosa, G.J.M.3
Weigel, K.A.4
Crossa, J.5
-
30
-
-
59149094598
-
Selection of Gaussian kernel parameter for SVM based on convex estimation
-
Men CQ, Wang WJ: Selection of Gaussian Kernel Parameter for SVM Based on Convex Estimation. Lect Notes Comput Sci 2008, 5263:709-714.
-
(2008)
Lect Notes Comput Sci
, vol.5263
, pp. 709-714
-
-
Men, C.Q.1
Wang, W.J.2
-
31
-
-
62349101435
-
Gaussian kernel optimization for pattern classification
-
Wang J, Lu H, Plataniotis K.N., Lu JW: Gaussian kernel optimization for pattern classification. Pattern Recogn 2009, 42:1237-1247.
-
(2009)
Pattern Recogn
, vol.42
, pp. 1237-1247
-
-
Wang, J.1
Lu, H.2
Plataniotis, K.N.3
Lu, J.W.4
-
32
-
-
84874616535
-
A practical use of regularization for supervised learning with kernel methods
-
Prato M, Zanni L: A practical use of regularization for supervised learning with kernel methods. Pattern Recogn Lett 2013, 34:610-618.
-
(2013)
Pattern Recogn Lett
, vol.34
, pp. 610-618
-
-
Prato, M.1
Zanni, L.2
-
33
-
-
0024856897
-
The laplacian-of-Gaussian kernel: A formal analysis and design procedure for fast, accurate convolution and full-frame output
-
Sotak GE Jr, Boyer KL: The Laplacian-of-Gaussian kernel: a formal analysis and design procedure for fast, accurate convolution and full-frame output. Comput Vision Graph 1989, 48:147-189.
-
(1989)
Comput Vision Graph
, vol.48
, pp. 147-189
-
-
Sotak, G.E.1
Boyer, K.L.2
-
36
-
-
79957628638
-
The development and characterization of a 60 K SNP chip for chicken
-
Groenen MA, Megens H-J, Zare Y, Warren W.C., Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH: The development and characterization of a 60 K SNP chip for chicken. BMC Genomics 2011, 12:274.
-
(2011)
BMC Genomics
, vol.12
, pp. 274
-
-
Groenen, M.A.1
Megens, H.-J.2
Zare, Y.3
Warren, W.C.4
Hillier, L.W.5
Crooijmans, R.P.6
Vereijken, A.7
Okimoto, R.8
Muir, W.M.9
Cheng, H.H.10
-
38
-
-
79955083587
-
Interbull validation test for genomic evaluations
-
Mäntysaari E, Liu Z, VanRaden P: Interbull validation test for genomic evaluations. Interbull Bull 2010, 41:17-22.
-
(2010)
Interbull Bull
, vol.41
, pp. 17-22
-
-
Mäntysaari, E.1
Liu, Z.2
Vanraden, P.3
-
39
-
-
53449098071
-
Dimensionality reduction for heterogeneous dataset in rushes editing
-
Liu Y, Liu Y, Chan KCC: Dimensionality reduction for heterogeneous dataset in rushes editing. Pattern Recogn 2009, 42:229-242.
-
(2009)
Pattern Recogn
, vol.42
, pp. 229-242
-
-
Liu, Y.1
Liu, Y.2
Chan, K.C.C.3
-
40
-
-
0030211964
-
Bagging predictors
-
Breiman L: Bagging predictors. Mach Learn 1996, 24:123-140.
-
(1996)
Mach Learn
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
41
-
-
84899528042
-
Enhancing genome-enabled prediction by bagging genomic BLUP
-
Gianola D, Weigel KA, Kramer N, Stella A., Schon CC: Enhancing genome-enabled prediction by bagging genomic BLUP. PLoS ONE 2014, 9:e91693.
-
(2014)
PLoS ONE
, vol.9
-
-
Gianola, D.1
Weigel, K.A.2
Kramer, N.3
Stella, A.4
Schon, C.C.5
-
42
-
-
82955176938
-
Genomic selection in plant breeding: A comparison of models
-
Heslot N, Yang H-P, Sorrells ME, Jannink J-L: Genomic selection in plant breeding: a comparison of models. Crop Sci 2012, 52:146-160.
-
(2012)
Crop Sci
, vol.52
, pp. 146-160
-
-
Heslot, N.1
Yang, H.-P.2
Sorrells, M.E.3
Jannink, J.-L.4
-
43
-
-
84876393058
-
The effect of linkage disequilibrium and family relationships on the reliability of genomic prediction
-
Wientjes YCJ, Veerkamp RF, Calus MPL: The effect of linkage disequilibrium and family relationships on the reliability of genomic prediction. Genetics 2013, 193:621-631.
-
(2013)
Genetics
, vol.193
, pp. 621-631
-
-
Wientjes, Y.C.J.1
Veerkamp, R.F.2
Calus, M.P.L.3
|