메뉴 건너뛰기




Volumn 46, Issue 1, 2014, Pages

Genomic prediction based on data from three layer lines: A comparison between linear methods

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BAYES THEOREM; BIOLOGICAL MODEL; BREEDING; CHICKEN; COMPARATIVE STUDY; EGG; FEMALE; GENETICS; GENOME; GENOMICS; GENOTYPE; PEDIGREE; PRINCIPAL COMPONENT ANALYSIS; PROCEDURES; QUANTITATIVE TRAIT; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL;

EID: 84908416757     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/s12711-014-0057-5     Document Type: Article
Times cited : (21)

References (47)
  • 1
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen THE, Hayes BJ, Goddard ME: Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 3
    • 79960171497 scopus 로고    scopus 로고
    • Predicting genetic values: A kernel-based best linear unbiased prediction with genomic data
    • Ober U, Erbe M, Long NY, Porcu E, Schlather M, Simianer H: Predicting genetic values: a kernel-based best linear unbiased prediction with genomic data. Genetics 2011, 188:695-708.
    • (2011) Genetics , vol.188 , pp. 695-708
    • Ober, U.1    Erbe, M.2    Long, N.Y.3    Porcu, E.4    Schlather, M.5    Simianer, H.6
  • 4
    • 37249083895 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genome-assisted breeding values
    • Habier D, Fernando RL, Dekkers JCM: The impact of genetic relationship information on genome-assisted breeding values. Genetics 2007, 177:2389-2397.
    • (2007) Genetics , vol.177 , pp. 2389-2397
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 5
    • 67349287476 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximisation of long term response
    • Goddard M: Genomic selection: prediction of accuracy and maximisation of long term response. Genetica 2009, 136:245-257.
    • (2009) Genetica , vol.136 , pp. 245-257
    • Goddard, M.1
  • 8
    • 36849093104 scopus 로고    scopus 로고
    • Accuracy of genomic selection using different methods to define haplotypes
    • Calus MPL, Meuwissen THE, De Roos APW, Veerkamp RF: Accuracy of genomic selection using different methods to define haplotypes. Genetics 2008, 178:553-561.
    • (2008) Genetics , vol.178 , pp. 553-561
    • Calus, M.P.L.1    Meuwissen, T.H.E.2    De Roos, A.P.W.3    Veerkamp, R.F.4
  • 9
    • 75649126894 scopus 로고    scopus 로고
    • Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle
    • Verbyla KL, Hayes BJ, Bowman PJ, Goddard ME: Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle. Genet Res 2009, 91:307-311.
    • (2009) Genet Res , vol.91 , pp. 307-311
    • Verbyla, K.L.1    Hayes, B.J.2    Bowman, P.J.3    Goddard, M.E.4
  • 10
    • 71549118527 scopus 로고    scopus 로고
    • Reliability of genomic predictions across multiple populations
    • De Roos APW, Hayes BJ, Goddard ME: Reliability of genomic predictions across multiple populations. Genetics 2009, 183:1545-1553.
    • (2009) Genetics , vol.183 , pp. 1545-1553
    • De Roos, A.P.W.1    Hayes, B.J.2    Goddard, M.E.3
  • 11
    • 52049096371 scopus 로고    scopus 로고
    • Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle
    • De Roos APW, Hayes BJ, Spelman RJ, Goddard ME: Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle. Genetics 2008, 179:1503-1512.
    • (2008) Genetics , vol.179 , pp. 1503-1512
    • De Roos, A.P.W.1    Hayes, B.J.2    Spelman, R.J.3    Goddard, M.E.4
  • 12
    • 84899051325 scopus 로고    scopus 로고
    • Extent of linkage disequilibrium, consistency of gametic phase, and imputation accuracy within and across Canadian dairy breeds
    • Larmer SG, Sargolzaei M, Schenkel FS: Extent of linkage disequilibrium, consistency of gametic phase, and imputation accuracy within and across Canadian dairy breeds. J Dairy Sci 2014, 97:3128-3141.
    • (2014) J Dairy Sci , vol.97 , pp. 3128-3141
    • Larmer, S.G.1    Sargolzaei, M.2    Schenkel, F.S.3
  • 14
    • 84862511727 scopus 로고    scopus 로고
    • Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
    • Erbe M, Hayes BJ, Matukumalli LK, Goswami S, Bowman PJ, Reich CM, Mason BA, Goddard ME: Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. J Dairy Sci 2012, 95:4114-4129.
    • (2012) J Dairy Sci , vol.95 , pp. 4114-4129
    • Erbe, M.1    Hayes, B.J.2    Matukumalli, L.K.3    Goswami, S.4    Bowman, P.J.5    Reich, C.M.6    Mason, B.A.7    Goddard, M.E.8
  • 15
    • 84876361750 scopus 로고    scopus 로고
    • Genomic prediction in animals and plants: Simulation of data, validation, reporting, and benchmarking
    • Daetwyler HD, Calus MPL, Pong-Wong R, de los Campos G, Hickey JM: Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics 2013, 193:347-365.
    • (2013) Genetics , vol.193 , pp. 347-365
    • Daetwyler, H.D.1    Calus, M.P.L.2    Pong-Wong, R.3    De Los Campos, G.4    Hickey, J.M.5
  • 17
    • 79955083587 scopus 로고    scopus 로고
    • Interbull validation test for genomic evaluations
    • Mäntysaari E, Liu Z, VanRaden P: Interbull validation test for genomic evaluations. Interbull Bull 2010, 41:17-22.
    • (2010) Interbull Bull , vol.41 , pp. 17-22
    • Mäntysaari, E.1    Liu, Z.2    VanRaden, P.3
  • 19
    • 77958396896 scopus 로고
    • Nearest neighbour searches and the curse of dimensionality
    • Marimont R, Shapiro M: Nearest neighbour searches and the curse of dimensionality. IMA J Appl Math 1979, 24:59-70.
    • (1979) IMA J Appl Math , vol.24 , pp. 59-70
    • Marimont, R.1    Shapiro, M.2
  • 20
    • 80053568910 scopus 로고    scopus 로고
    • On the curse of dimensionality in supervised learning of smooth regression functions
    • Liitiäinen E, Corona F, Lendasse A: On the curse of dimensionality in supervised learning of smooth regression functions. Neural Process Letts 2011, 34:133-154.
    • (2011) Neural Process Letts , vol.34 , pp. 133-154
    • Liitiäinen, E.1    Corona, F.2    Lendasse, A.3
  • 21
    • 85076130883 scopus 로고    scopus 로고
    • Stabilization of ill-posed nonlinear regression model and its application to interferogram reduction
    • Slepicka JS, Cha SS: Stabilization of ill-posed nonlinear regression model and its application to interferogram reduction. SPIE Proceedings 1991, 1554B:574.
    • SPIE Proceedings 1991 , vol.1554 B , pp. 574
    • Slepicka, J.S.1    Cha, S.S.2
  • 22
    • 21844486429 scopus 로고
    • Penalized discriminant analysis
    • Hastie T, Buja A, Tibshirani R: Penalized discriminant analysis. Ann Stat 1995, 23:73-102.
    • (1995) Ann Stat , vol.23 , pp. 73-102
    • Hastie, T.1    Buja, A.2    Tibshirani, R.3
  • 23
    • 0041497796 scopus 로고
    • Multivariate discriminant analysis and maximum penalized likelihood density estimation
    • Granville V, Rasson JP: Multivariate discriminant analysis and maximum penalized likelihood density estimation. J Roy Stat Soc B 1995, 57:501-517.
    • (1995) J Roy Stat Soc B , vol.57 , pp. 501-517
    • Granville, V.1    Rasson, J.P.2
  • 24
    • 80052950542 scopus 로고    scopus 로고
    • Consistency and error analysis of prior-knowledge-based kernel regression
    • Sun Z, Zhang Z, Wang H: Consistency and error analysis of prior-knowledge-based kernel regression. Neurocomputing 2011, 74:3476-3485.
    • (2011) Neurocomputing , vol.74 , pp. 3476-3485
    • Sun, Z.1    Zhang, Z.2    Wang, H.3
  • 25
    • 36849072437 scopus 로고    scopus 로고
    • Incorporating prior knowledge in support vector regression
    • Lauer F, Bloch G: Incorporating prior knowledge in support vector regression. Mach Learn 2008, 70:89-118.
    • (2008) Mach Learn , vol.70 , pp. 89-118
    • Lauer, F.1    Bloch, G.2
  • 29
    • 38949168198 scopus 로고    scopus 로고
    • Technical note: Computing strategies in genome-wide selection
    • Legarra A, Misztal I: Technical note: computing strategies in genome-wide selection. J Dairy Sci 2008, 91:360-366.
    • (2008) J Dairy Sci , vol.91 , pp. 360-366
    • Legarra, A.1    Misztal, I.2
  • 30
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • VanRaden PM: Efficient methods to compute genomic predictions. J Dairy Sci 2008, 91:4414-4423.
    • (2008) J Dairy Sci , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 31
    • 77958581195 scopus 로고    scopus 로고
    • The impact of genetic architecture on genome-wide evaluation methods
    • Daetwyler HD, Pong-Wong R, Villanueva B, Woolliams JA: The impact of genetic architecture on genome-wide evaluation methods. Genetics 2010, 185:1021-1031.
    • (2010) Genetics , vol.185 , pp. 1021-1031
    • Daetwyler, H.D.1    Pong-Wong, R.2    Villanueva, B.3    Woolliams, J.A.4
  • 32
    • 80052286471 scopus 로고    scopus 로고
    • Different models of genetic variation and their effect on genomic evaluation
    • Clark SA, Hickey JM, van der Werf JHJ: Different models of genetic variation and their effect on genomic evaluation. Genet Sel Evol 2011, 43:18.
    • (2011) Genet Sel Evol , vol.43 , pp. 18
    • Clark, S.A.1    Hickey, J.M.2    Van Der Werf, J.H.J.3
  • 33
    • 84926488537 scopus 로고    scopus 로고
    • Right-hand-side updating for fast computing of genomic breeding values
    • Calus MPL: Right-hand-side updating for fast computing of genomic breeding values. Genet Sel Evol 2014, 46:24.
    • (2014) Genet Sel Evol , vol.46 , pp. 24
    • Calus, M.P.L.1
  • 34
    • 84873961373 scopus 로고    scopus 로고
    • Use of principal component approach to predict direct genomic breeding values for beef traits in Italian Simmental cattle
    • Gaspa G, Pintus MA, Nicolazzi EL, Vicario D, Valentini A, Dimauro C, Macciotta NPP: Use of principal component approach to predict direct genomic breeding values for beef traits in Italian Simmental cattle. J Anim Sci 2013, 91:29-37.
    • (2013) J Anim Sci , vol.91 , pp. 29-37
    • Gaspa, G.1    Pintus, M.A.2    Nicolazzi, E.L.3    Vicario, D.4    Valentini, A.5    Dimauro, C.6    Macciotta, N.P.P.7
  • 37
    • 84872554275 scopus 로고    scopus 로고
    • Joint genomic evaluation of French dairy cattle breeds using multiple-trait models
    • Karoui S, Carabano MJ, Diaz C, Legarra A: Joint genomic evaluation of French dairy cattle breeds using multiple-trait models. Genet Sel Evol 2012, 44:39.
    • (2012) Genet Sel Evol , vol.44 , pp. 39
    • Karoui, S.1    Carabano, M.J.2    Diaz, C.3    Legarra, A.4
  • 39
    • 72649107331 scopus 로고    scopus 로고
    • Genomic selection in admixed and crossbred populations
    • Toosi A, Fernando RL, Dekkers JCM: Genomic selection in admixed and crossbred populations. J Anim Sci 2010, 88:32-46.
    • (2010) J Anim Sci , vol.88 , pp. 32-46
    • Toosi, A.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 41
    • 84865312313 scopus 로고    scopus 로고
    • Multibreed genomic evaluations using purebred Holsteins, Jerseys, and Brown Swiss
    • Olson KM, VanRaden PM, Tooker ME: Multibreed genomic evaluations using purebred Holsteins, Jerseys, and Brown Swiss. J Dairy Sci 2012, 95:5378-5383.
    • (2012) J Dairy Sci , vol.95 , pp. 5378-5383
    • Olson, K.M.1    VanRaden, P.M.2    Tooker, M.E.3
  • 42
    • 84855677951 scopus 로고    scopus 로고
    • Evaluation of a multi-line broiler chicken population using a single-step genomic evaluation procedure
    • Simeone R, Misztal I, Aguilar I, Vitezica ZG: Evaluation of a multi-line broiler chicken population using a single-step genomic evaluation procedure. J Anim Breed Genet 2012, 129:3-10.
    • (2012) J Anim Breed Genet , vol.129 , pp. 3-10
    • Simeone, R.1    Misztal, I.2    Aguilar, I.3    Vitezica, Z.G.4
  • 43
    • 82155163139 scopus 로고    scopus 로고
    • Reliability of direct genomic values for animals with different relationships within and to the reference population
    • Pszczola M, Strabel T, Mulder HA, Calus MPL: Reliability of direct genomic values for animals with different relationships within and to the reference population. J Dairy Sci 2012, 95:389-400.
    • (2012) J Dairy Sci , vol.95 , pp. 389-400
    • Pszczola, M.1    Strabel, T.2    Mulder, H.A.3    Calus, M.P.L.4
  • 45
    • 78149443610 scopus 로고    scopus 로고
    • Linkage disequilibrium reveals different demographic history in egg laying chickens
    • Qanbari S, Hansen M, Weigend S, Preisinger R, Simianer H: Linkage disequilibrium reveals different demographic history in egg laying chickens. BMC Genet 2010, 11:103.
    • (2010) BMC Genet , vol.11 , pp. 103
    • Qanbari, S.1    Hansen, M.2    Weigend, S.3    Preisinger, R.4    Simianer, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.