메뉴 건너뛰기




Volumn 1, Issue 1, 2013, Pages 42-50

Unraveling the Complexities of Life Sciences Data

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84920279304     PISSN: 21676461     EISSN: 2167647X     Source Type: Journal    
DOI: 10.1089/big.2012.1505     Document Type: Article
Times cited : (43)

References (101)
  • 2
    • 84859789410 scopus 로고    scopus 로고
    • Opportunities and challenges for the life sciences community
    • Kolker E., Stewart E., and Ozdemir V. Opportunities and challenges for the life sciences community. OMICS 2012; 16:138-147
    • (2012) OMICS , vol.16 , pp. 138-147
    • Kolker, E.1    Stewart, E.2    Ozdemir, V.3
  • 3
    • 84991805683 scopus 로고    scopus 로고
    • Data to knowledge to action
    • Kolker E. and Stewart E. Data to knowledge to action. Scientist 2012; 26
    • (2012) Scientist , pp. 26
    • Kolker, E.1    Stewart, E.2
  • 4
    • 0034572821 scopus 로고    scopus 로고
    • Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)
    • Natale D.A., et al. Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol 2000; 1:1-19
    • (2000) Genome Biol. , vol.1 , pp. 1-19
    • Natale, D.A.1
  • 5
    • 67650479361 scopus 로고    scopus 로고
    • NCBI peptidome: A new public repository for mass spectrometry peptide identifications
    • Slotta D.J., Barrett T., and Edgar R. NCBI peptidome: a new public repository for mass spectrometry peptide identifications. Nat Biotechnol 2009; 27:600-601
    • (2009) Nat Biotechnol , vol.27 , pp. 600-601
    • Slotta, D.J.1    Barrett, T.2    Edgar, R.3
  • 6
    • 0037249498 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR): A model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
    • Rhee S.Y. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research 2003; 31:224-228
    • (2003) Nucleic Acids Research , vol.31 , pp. 224-228
    • Rhee, S.Y.1
  • 7
    • 84860846775 scopus 로고    scopus 로고
    • The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
    • Galperin M.Y. and Fernandez-Suarez X.M. The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Res 2012; 40:D1-D8
    • (2012) Nucleic Acids Res , vol.40 , pp. D1-D8
    • Galperin, M.Y.1    Fernandez-Suarez, X.M.2
  • 8
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • Stein L.D. The case for cloud computing in genome informatics. Genome Biology 2010; 11:207
    • (2010) Genome Biology , vol.11 , pp. 207
    • Stein, L.D.1
  • 10
    • 0000793139 scopus 로고
    • Cramming more components onto integrated circuits
    • Moore G.E. Cramming more components onto integrated circuits. Electronics 1965; 38
    • (1965) Electronics , pp. 38
    • Moore, G.E.1
  • 11
    • 84859169880 scopus 로고    scopus 로고
    • Drug development: Raise standards for preclinical cancer research
    • Begley C.G. and Ellis L.M. Drug development: Raise standards for preclinical cancer research. Nature 2012; 483:531-533
    • (2012) Nature , vol.483 , pp. 531-533
    • Begley, C.G.1    Ellis, L.M.2
  • 12
    • 0034060929 scopus 로고    scopus 로고
    • Powers and pitfalls in sequence analysis: The 70% hurdle
    • Bork P. Powers and pitfalls in sequence analysis: the 70% hurdle. Genome Res 2000; 10:398-400
    • (2000) Genome Res , vol.10 , pp. 398-400
    • Bork, P.1
  • 14
    • 67649649676 scopus 로고    scopus 로고
    • Avoidable waste in the production and reporting of research evidence
    • Chalmers I. and Glasziou P. Avoidable waste in the production and reporting of research evidence. The Lancet 2009; 374:86-89
    • (2009) The Lancet , vol.374 , pp. 86-89
    • Chalmers, I.1    Glasziou, P.2
  • 15
    • 79956338614 scopus 로고    scopus 로고
    • Special issue on data-intensive science
    • Kolker E. Special issue on data-intensive science. OMICS 2011; 15:197-198
    • (2011) OMICS , vol.15 , pp. 197-198
    • Kolker, E.1
  • 16
    • 79956341522 scopus 로고    scopus 로고
    • Bioinformatics and data-intensive scientific discovery in the beginning of the 21st century
    • Barga R., et al. Bioinformatics and data-intensive scientific discovery in the beginning of the 21st century. OMICS 2011; 15:199-201
    • (2011) OMICS , vol.15 , pp. 199-201
    • Barga, R.1
  • 17
    • 79956373777 scopus 로고    scopus 로고
    • Technology and data-intensive science in the beginning of the 21st century
    • Bernstein P.A., et al. Technology and data-intensive science in the beginning of the 21st century. OMICS 2011; 15:203-207
    • (2011) OMICS , vol.15 , pp. 203-207
    • Bernstein, P.A.1
  • 18
    • 79956343625 scopus 로고    scopus 로고
    • Communication and data-intensive science in the beginning of the 21st century
    • Faris J., et al. Communication and data-intensive science in the beginning of the 21st century. OMICS 2011; 15: 213-215
    • (2011) OMICS , vol.15 , pp. 213-215
    • Faris, J.1
  • 19
    • 79956341336 scopus 로고    scopus 로고
    • Policy and data-intensive scientific discovery in the beginning of the 21st century
    • Ozdemir V., et al. Policy and data-intensive scientific discovery in the beginning of the 21st century. OMICS 2011; 15:221-225
    • (2011) OMICS , vol.15 , pp. 221-225
    • Ozdemir, V.1
  • 20
    • 79956373163 scopus 로고    scopus 로고
    • Biology and Data-Intensive scientific discovery in the beginning of the 21st century
    • Smith A., et al. Biology and Data-Intensive scientific discovery in the beginning of the 21st century. OMICS 2011; 15:209-212
    • (2011) OMICS , vol.15 , pp. 209-212
    • Smith, A.1
  • 21
    • 79956357737 scopus 로고    scopus 로고
    • Education and data-intensive science in the beginning of the 21st century
    • Wolf F., et al. Education and data-intensive science in the beginning of the 21st century. OMICS 2011; 15: 217-219
    • (2011) OMICS , vol.15 , pp. 217-219
    • Wolf, F.1
  • 22
    • 84865258579 scopus 로고    scopus 로고
    • DELSA Global for 'big data' and the bioeconomy: Catalyzing collective innovation
    • Kolker E., Stewart E., and Ozdemir V. DELSA Global for 'big data' and the bioeconomy: catalyzing collective innovation. Industrial Biotech 2012; 8:176-178
    • (2012) Industrial Biotech , vol.8 , pp. 176-178
    • Kolker, E.1    Stewart, E.2    Ozdemir, V.3
  • 23
    • 83455186287 scopus 로고    scopus 로고
    • Towards an ecology of collective innovation: Human variome project (hvp), rare disease consortium for autosomal loci (radical) and data-enabled life sciences alliance (delsa)
    • Ozdemir V., et al. Towards an ecology of collective innovation: Human Variome Project (HVP), Rare Disease Consortium for Autosomal Loci (RaDiCAL) and Data-Enabled Life Sciences Alliance (DELSA). Current Pharmacogenomics Personalized Medicine 2011; 9:243-251
    • (2011) Current Pharmacogenomics Personalized Medicine , vol.9 , pp. 243-251
    • Ozdemir, V.1
  • 24
    • 84862209165 scopus 로고    scopus 로고
    • MOPED: Model organism protein expression database
    • Kolker E., et al. MOPED: Model organism protein expression database. Nucleic Acids Res 2012; 40:D1093-1099
    • (2012) Nucleic Acids Res , vol.40 , pp. D1093-1099
    • Kolker, E.1
  • 25
    • 84860615255 scopus 로고    scopus 로고
    • In-silico human genomics with Gene-Cards
    • Stelzer G., et al. In-silico human genomics with Gene-Cards. Human Genomics 2011; 5:709-717
    • (2011) Human Genomics , vol.5 , pp. 709-717
    • Stelzer, G.1
  • 26
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Ogata H., et al. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 1999; 27:29-34
    • (1999) Nucleic Acids Res , vol.27 , pp. 29-34
    • Ogata, H.1
  • 27
    • 13444259844 scopus 로고    scopus 로고
    • Reactome: A knowledgebase of biological pathways
    • Joshi-Tope G., et al. Reactome: a knowledgebase of biological pathways. Nucleic Acids Res 2005; 33:D428-432
    • (2005) Nucleic Acids Res , vol.33 , pp. D428-432
    • Joshi-Tope, G.1
  • 28
    • 13444273448 scopus 로고    scopus 로고
    • The universal protein resource (uni-prot)
    • Bairoch A., et al. The Universal Protein Resource (Uni-Prot). Nucleic Acids Res 2005; 33:D154-159
    • (2005) Nucleic Acids Res , vol.33 , pp. D154-159
    • Bairoch, A.1
  • 29
    • 13444272087 scopus 로고    scopus 로고
    • Entrez Gene: Gene-centered information at NCBI
    • Maglott D., et al. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 2004; 33:D54-D58
    • (2004) Nucleic Acids Res , vol.33 , pp. D54-D58
    • Maglott, D.1
  • 30
    • 0141742293 scopus 로고    scopus 로고
    • PANTHER: A library of protein families and subfamilies indexed by function
    • Thomas P.D., et al. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res. 2003; 13:2129-2141
    • (2003) Genome Res , vol.13 , pp. 2129-2141
    • Thomas, P.D.1
  • 31
    • 84868089043 scopus 로고    scopus 로고
    • SEED Servers: High-performance access to the SEED genomes, annotations, and metabolic models
    • Aziz R.K., et al. SEED Servers: high-performance access to the SEED genomes, annotations, and metabolic models. PLOS ONE 2012; 7:e48053
    • (2012) PLOS ONE , vol.7 , pp. e48053
    • Aziz, R.K.1
  • 32
    • 84858743300 scopus 로고    scopus 로고
    • SPIRE: Systematic protein investigative research environment
    • Kolker E., et al. SPIRE: Systematic protein investigative research environment. J Proteomics 2011; 75:122-126
    • (2011) J Proteomics , vol.75 , pp. 122-126
    • Kolker, E.1
  • 33
    • 84862215795 scopus 로고    scopus 로고
    • Corrigendum to 'spire: Systematic protein investigative research environment
    • Kolker E., et al. Corrigendum to 'SPIRE: Systematic Protein Investigative Research Environment.' J Proteomics 2012; 75:3789
    • (2012) J Proteomics , vol.75 , pp. 3789
    • Kolker, E.1
  • 34
    • 13844254513 scopus 로고    scopus 로고
    • LIP index for peptide classification using MS/MS and SEQUEST search via logistic regression
    • Higdon R., et al. LIP index for peptide classification using MS/MS and SEQUEST search via logistic regression. OMICS 2004; 8:357-369
    • (2004) OMICS , vol.8 , pp. 357-369
    • Higdon, R.1
  • 35
    • 1242351300 scopus 로고    scopus 로고
    • Statistical analysis of global gene expression data: Some practical considerations
    • Holzman T. and Kolker E. Statistical analysis of global gene expression data: Some practical considerations. Current Opinion Biotech 2004; 15:52-57
    • (2004) Current Opinion Biotech , vol.15 , pp. 52-57
    • Holzman, T.1    Kolker, E.2
  • 36
    • 13844316454 scopus 로고    scopus 로고
    • Global profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and improved functional annotations
    • Kolker E., et al. Global profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sciences USA 2005; 102:2099-2104
    • (2005) Proc Natl Acad Sciences USA , vol.102 , pp. 2099-2104
    • Kolker, E.1
  • 37
    • 32544455331 scopus 로고    scopus 로고
    • Randomized sequence databases for tandem mass spectrometry peptide and protein identification
    • Higdon R., Hogan J.M., van Belle G., and Kolker E. Randomized sequence databases for tandem mass spectrometry peptide and protein identification. OMICS 2005; 9:364-379
    • (2005) OMICS , vol.9 , pp. 364-379
    • Higdon, R.1    Hogan, J.M.2    Van Belle, G.3    Kolker, E.4
  • 38
    • 33646518595 scopus 로고    scopus 로고
    • Protein identification and expression analysis using mass spectrometry
    • Kolker E., Higdon R., and Hogan J.M. Protein identification and expression analysis using mass spectrometry. Trends Microbiology 2006; 14:229-235
    • (2006) Trends Microbiology , vol.14 , pp. 229-235
    • Kolker, E.1    Higdon, R.2    Hogan, J.M.3
  • 39
    • 33748031098 scopus 로고    scopus 로고
    • Experimental standards for high-throughput proteomics
    • Hogan J.M., Higdon R., and Kolker E. Experimental standards for high-throughput proteomics. OMICS 2006; 10:152-157
    • (2006) OMICS , vol.10 , pp. 152-157
    • Hogan, J.M.1    Higdon, R.2    Kolker, E.3
  • 40
    • 37349003083 scopus 로고    scopus 로고
    • Experiment-specific estimation of peptide identification probabilities using a randomized database
    • Higdon R., et al. Experiment-specific estimation of peptide identification probabilities using a randomized database. OMICS 2007; 11:351-365
    • (2007) OMICS , vol.11 , pp. 351-365
    • Higdon, R.1
  • 41
    • 33847252600 scopus 로고    scopus 로고
    • A predictive model for identifying proteins with a single peptide match
    • Higdon R. and Kolker E. A predictive model for identifying proteins with a single peptide match. Bioinformatics 2007; 23:277-280
    • (2007) Bioinformatics , vol.23 , pp. 277-280
    • Higdon, R.1    Kolker, E.2
  • 42
    • 43349084908 scopus 로고    scopus 로고
    • A note on the false discovery rate and inconsistent comparisons between experiments
    • Higdon R., van Belle G., and Kolker E. A note on the false discovery rate and inconsistent comparisons between experiments. Bioinformatics 2008; 24:1225-1228
    • (2008) Bioinformatics , vol.24 , pp. 1225-1228
    • Higdon, R.1    Van Belle, G.2    Kolker, E.3
  • 43
    • 70349882123 scopus 로고    scopus 로고
    • Megascience 'Omics data sharing
    • Field D., et al. Megascience. 'Omics data sharing. Science 2009; 326:234-236
    • (2009) Science , vol.326 , pp. 234-236
    • Field, D.1
  • 44
    • 77954198983 scopus 로고    scopus 로고
    • Meta-analysis for protein identification: A case-study of yeast data
    • Higdon R., Haynes W.A., and Kolker E. Meta-analysis for protein identification: A case-study of yeast data. OMICS 2010; 14:309-314
    • (2010) OMICS , vol.14 , pp. 309-314
    • Higdon, R.1    Haynes, W.A.2    Kolker, E.3
  • 45
    • 77953861977 scopus 로고    scopus 로고
    • Estimating false discovery rates for peptide and protein identification using randomized databases
    • Hather G., et al. Estimating false discovery rates for peptide and protein identification using randomized databases. Proteomics 2010; 10:2369-2376
    • (2010) Proteomics , vol.10 , pp. 2369-2376
    • Hather, G.1
  • 46
    • 79951747696 scopus 로고    scopus 로고
    • The necessity of adjusting tests of protein category enrichment in discovery proteomics
    • Louie B., Higdon R., Kolker E., et al. The necessity of adjusting tests of protein category enrichment in discovery proteomics. Bioinformatics 2010; 26:3007-3011
    • (2010) Bioinformatics , vol.26 , pp. 3007-3011
    • Louie, B.1    Higdon, R.2    Kolker, E.3
  • 47
    • 84858713354 scopus 로고    scopus 로고
    • IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics
    • Higdon R., et al. IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics. J Proteomics 2011; 75: 116-121
    • (2011) J Proteomics , vol.75 , pp. 116-121
    • Higdon, R.1
  • 48
    • 84978259965 scopus 로고    scopus 로고
    • Statistical methods in systems biology
    • Dubitzky W, Wolkenhauer O, Yokota H, and Cho KH, eds. New York: Springer Publishing, in press
    • Kolker E. Statistical methods in systems biology. In: Dubitzky W, Wolkenhauer O, Yokota H, and Cho KH, eds. Encyclopedia of Systems Biology. New York: Springer Publishing, in press
    • Encyclopedia of Systems Biology
    • Kolker, E.1
  • 50
    • 79961233639 scopus 로고    scopus 로고
    • Classifying proteins into functional groups based on all-versus-all BLAST of 10 million proteins
    • Kolker N., et al. Classifying Proteins into Functional Groups Based on All-versus-All BLAST of 10 Million Proteins. OMICS 2011; 15:513-521
    • (2011) OMICS , vol.15 , pp. 513-521
    • Kolker, N.1
  • 51
    • 34347388470 scopus 로고    scopus 로고
    • UniRef: Comprehensive and non-redundant UniProt reference clusters
    • Suzek B. E., Huang H., McGarvey P., et al. UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 2007; 23:1282-1288
    • (2007) Bioinformatics , vol.23 , pp. 1282-1288
    • Suzek, B.E.1    Huang, H.2    McGarvey, P.3
  • 52
    • 84991776708 scopus 로고    scopus 로고
    • Barga R. Windows Azure. Available at: windowsazure. com
    • Barga, R.1
  • 53
    • 70449552832 scopus 로고    scopus 로고
    • A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions
    • Louie B., Higdon R., and Kolker E. A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions. PLOS ONE 2010; 4:e7546
    • (2010) PLOS ONE , vol.4 , pp. e7546
    • Louie, B.1    Higdon, R.2    Kolker, E.3
  • 54
    • 51349145617 scopus 로고    scopus 로고
    • Validating annotations for uncharacterized proteins in Shewanella oneidensis
    • Louie B., Tarczy-Hornoch P., Higdon R., and Kolker E. Validating annotations for uncharacterized proteins in Shewanella oneidensis. OMICS 2008; 12:211-215
    • (2008) OMICS , vol.12 , pp. 211-215
    • Louie, B.1    Tarczy-Hornoch, P.2    Higdon, R.3    Kolker, E.4
  • 59
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • Tatusov R.L., et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003; 4:41
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.L.1
  • 61
    • 0033985049 scopus 로고    scopus 로고
    • The SYSTERS protein sequence cluster set
    • Krause A., Stoye J., and Vingron M. The SYSTERS protein sequence cluster set. Nucleic Acids Res 2000; 28:270-272
    • (2000) Nucleic Acids Res , vol.28 , pp. 270-272
    • Krause, A.1    Stoye, J.2    Vingron, M.3
  • 62
    • 38549177928 scopus 로고    scopus 로고
    • EggNOG: Automated construction and annotation of orthologous groups of genes
    • Jensen L.J., et al. eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res 2008; 36:D250-254
    • (2008) Nucleic Acids Res , vol.36 , pp. D250-254
    • Jensen, L.J.1
  • 63
    • 58149186488 scopus 로고    scopus 로고
    • The national center for biotechnology information's protein clusters database
    • Klimke W., et al. The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res 2009; 37:D216-223
    • (2009) Nucleic Acids Res , vol.37 , pp. D216-223
    • Klimke, W.1
  • 65
    • 84978259965 scopus 로고    scopus 로고
    • Statistical methods in systems biology
    • Dubitzky W, Wolkenhauer O, Yokota H, and Cho KH, eds. New York: Springer Publishing, in press
    • Stanberry L., Haynes W., Higdon R., and Kolker E. Statistical methods in systems biology. In: Dubitzky W, Wolkenhauer O, Yokota H, and Cho KH, eds. Encyclopedia of Systems Biology. New York: Springer Publishing, in press
    • Encyclopedia of Systems Biology
    • Stanberry, L.1    Haynes, W.2    Higdon, R.3    Kolker, E.4
  • 66
    • 84991778429 scopus 로고    scopus 로고
    • Basic principles of proteomics: Mass spectrometry and column chromatography explained
    • Seattle, WA
    • Haynes W., et al. ''Basic Principles of Proteomics: Mass Spectrometry and Column Chromatography Explained.'' Mobile Laboratory Coalition Annual Conference, Seattle, WA, 2012
    • (2012) Mobile Laboratory Coalition Annual Conference
    • Haynes, W.1
  • 67
    • 0038402438 scopus 로고    scopus 로고
    • Integrative microbiology
    • Kolker E. Integrative microbiology. OMICS 2002; 6:285
    • (2002) OMICS , vol.6 , pp. 285
    • Kolker, E.1
  • 68
    • 0038402396 scopus 로고    scopus 로고
    • H influenzae consortium integrative study of H influenzae-human interactions
    • Kolker E., et al. H. influenzae consortium: Integrative study of H. influenzae-human interactions. OMICS 2002; 6:341-348
    • (2002) OMICS , vol.6 , pp. 341-348
    • Kolker, E.1
  • 69
    • 0038444287 scopus 로고    scopus 로고
    • Initial proteome analysis of model microorganism Haemophilus influenzae Rd KW20
    • Kolker E., et al. Initial proteome analysis of model microorganism Haemophilus influenzae Rd KW20. J Bacteriology 2003; 185:4593-4602
    • (2003) J Bacteriology , vol.185 , pp. 4593-4602
    • Kolker, E.1
  • 70
    • 11144354963 scopus 로고    scopus 로고
    • In silico metabolic model and protein expression of Haemophilus influenzae Rd strain KW20 in rich medium
    • Raghunathan A., et al. In silico metabolic model and protein expression of Haemophilus influenzae Rd strain KW20 in rich medium. OMICS 2004; 8:25-41
    • (2004) OMICS , vol.8 , pp. 25-41
    • Raghunathan, A.1
  • 71
    • 84991748771 scopus 로고    scopus 로고
    • Towards richer descriptions of our collection of genomes and metagenomes
    • Field D., et al. Towards richer descriptions of our collection of genomes and metagenomes. Standards Genomic Sciences 2008; 1:1-7
    • (2008) Standards Genomic Sciences , vol.1 , pp. 1-7
    • Field, D.1
  • 72
    • 40749084431 scopus 로고    scopus 로고
    • Host airway proteins interact with Staphylococcus aureus during early pneumonia
    • Ventura C.L., et al. Host airway proteins interact with Staphylococcus aureus during early pneumonia. Infection Immunity 2008; 76:888-898
    • (2008) Infection Immunity , vol.76 , pp. 888-898
    • Ventura, C.L.1
  • 73
    • 57349173936 scopus 로고    scopus 로고
    • Staphylococcus aureus elicits marked alterations in the airway proteome during early pneumonia
    • Ventura C.L., et al. Staphylococcus aureus elicits marked alterations in the airway proteome during early pneumonia. Infection Immunity 2008; 76:5862-5872
    • (2008) Infection Immunity , vol.76 , pp. 5862-5872
    • Ventura, C.L.1
  • 74
    • 64949139020 scopus 로고    scopus 로고
    • Genome-environment interactions, prospective technology assessment and OMICS waves: From pharmacogenomics and nutrigenomics to ecogenomics
    • Ozdemir V., Motulsky A.G., Kolker E., and Godard B. Genome-environment interactions, prospective technology assessment and OMICS waves: From pharmacogenomics and nutrigenomics to ecogenomics. OMICS 2009; 13:1-6
    • (2009) OMICS , vol.13 , pp. 1-6
    • Ozdemir, V.1    Motulsky, A.G.2    Kolker, E.3    Godard, B.4
  • 75
    • 64949127696 scopus 로고    scopus 로고
    • Risk assessment and communication tools for genotype associations with multifactorial phenotypes: The concept of 'edge effect' and cultivating a bridge between OMICS innovations and society
    • Ozdemir V., et al. Risk assessment and communication tools for genotype associations with multifactorial phenotypes: The concept of 'edge effect' and cultivating a bridge between OMICS innovations and society. OMICS 2009; 13:43-61
    • (2009) OMICS , vol.13 , pp. 43-61
    • Ozdemir, V.1
  • 76
    • 70349866672 scopus 로고    scopus 로고
    • Genome project standards in a new era of sequencing
    • Chain P.S., et al. Genome project standards in a new era of sequencing. Science 2009; 326:236-237
    • (2009) Science , vol.326 , pp. 236-237
    • Chain, P.S.1
  • 77
    • 69249152632 scopus 로고    scopus 로고
    • Meeting report the 2009 westlake international conference on personalized medicine
    • Lin B., et al. Meeting report: the 2009 Westlake International Conference on Personalized Medicine. OMICS 2009; 13:285-289
    • (2009) OMICS , vol.13 , pp. 285-289
    • Lin, B.1
  • 78
    • 73149113350 scopus 로고    scopus 로고
    • OMICS 2009, 2010 and beyond
    • Kolker E. OMICS 2009, 2010 and Beyond. OMICS 2009; 13:451
    • (2009) OMICS , vol.13 , pp. 451
    • Kolker, E.1
  • 79
    • 77949679703 scopus 로고    scopus 로고
    • Interplay of heritage and habitat in the distribution of prokaryotic signal transduction systems
    • Galperin M.Y., Higdon R., and Kolker E. Interplay of heritage and habitat in the distribution of prokaryotic signal transduction systems. Molecular BioSystems 2010; 6:721-728
    • (2010) Molecular BioSystems , vol.6 , pp. 721-728
    • Galperin, M.Y.1    Higdon, R.2    Kolker, E.3
  • 80
    • 80053360940 scopus 로고    scopus 로고
    • Meeting report metagenomics, metadata and meta-analysis (m3) workshop at the pacific symposium on biocomputing 2010
    • Hirschman L., et al. Meeting report: ''Metagenomics, Metadata and Meta-analysis'' (M3) workshop at the Pacific Symposium on Biocomputing 2010. Standards Genomic Sciences 2010; 2:357-360
    • (2010) Standards Genomic Sciences , vol.2 , pp. 357-360
    • Hirschman, L.1
  • 81
    • 77954181166 scopus 로고    scopus 로고
    • Global issues
    • Kolker E. Global issues. OMICS 2010; 14:229
    • (2010) OMICS , vol.14 , pp. 229
    • Kolker, E.1
  • 82
    • 77956017391 scopus 로고    scopus 로고
    • A vision for 21st century US policy to support sustainable advancement of scientific discovery and technological innovation
    • Kolker E. A vision for 21st century US policy to support sustainable advancement of scientific discovery and technological innovation. OMICS 2010;14, 333-335
    • (2010) OMICS , vol.14 , pp. 333-335
    • Kolker, E.1
  • 83
    • 77956030397 scopus 로고    scopus 로고
    • The United States of America and scientific research
    • Hather G., et al. The United States of America and scientific research. PLOS ONE 2010; 5:e12203
    • (2010) PLOS ONE , vol.5 , pp. e12203
    • Hather, G.1
  • 84
    • 79959811613 scopus 로고    scopus 로고
    • Meeting report: BioSharing at ISMB 2010
    • Field D., et al. Meeting report: BioSharing at ISMB 2010. Standards Genomic Sciences 2010; 3:254-258
    • (2010) Standards Genomic Sciences , vol.3 , pp. 254-258
    • Field, D.1
  • 85
    • 80052722544 scopus 로고    scopus 로고
    • Meeting report: The Terabase metagenomics workshop and the vision of an Earth Microbiome Project
    • Gilbert J.A., et al. Meeting report: The Terabase metagenomics workshop and the vision of an Earth Microbiome Project. Standards Genomic Sciences 2010; 3:243-248
    • (2010) Standards Genomic Sciences , vol.3 , pp. 243-248
    • Gilbert, J.A.1
  • 86
    • 80052703586 scopus 로고    scopus 로고
    • Vaccines of the 21st century and vaccinomics: Data-enabled science meets global health to spark collective action for vaccine innovation
    • Ozdemir V., et al. Vaccines of the 21st century and vaccinomics: data-enabled science meets global health to spark collective action for vaccine innovation. OMICS 2011;15: 523-527
    • (2011) OMICS , vol.15 , pp. 523-527
    • Ozdemir, V.1
  • 87
    • 84869870038 scopus 로고    scopus 로고
    • Designing a post-genomics knowledge ecosystem to translate pharmacogenomics into public health action
    • Dove E.S., Faraj S.A., Kolker E., and Ozdemir, V. Designing a post-genomics knowledge ecosystem to translate pharmacogenomics into public health action. Genome Medicine 2012; 4:91
    • (2012) Genome Medicine , vol.4 , pp. 91
    • Dove, E.S.1    Faraj, S.A.2    Kolker, E.3    Ozdemir, V.4
  • 89
    • 84864843180 scopus 로고    scopus 로고
    • In silico method for modelling metabolism and gene product expression at genome scale
    • Lerman J.A., et al. In silico method for modelling metabolism and gene product expression at genome scale. Nature 2012; 3:929
    • (2012) Nature , vol.3 , pp. 929
    • Lerman, J.A.1
  • 90
    • 84858433310 scopus 로고    scopus 로고
    • Personal omics profiling reveals dynamic molecular and medical phenotypes
    • Chen R., et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell 2012; 148:1293-1307
    • (2012) Cell , vol.148 , pp. 1293-1307
    • Chen, R.1
  • 91
    • 84864806354 scopus 로고    scopus 로고
    • Quantifying your body: A how-to guide from a systems biology perspective
    • Smarr L. Quantifying your body: A how-to guide from a systems biology perspective. Biotech J 2012; 7:980-991
    • (2012) Biotech J , vol.7 , pp. 980-991
    • Smarr, L.1
  • 93
    • 72849149423 scopus 로고    scopus 로고
    • Searching for SNPs with cloud computing
    • Langmead B., Schatz M.C., Lin J., et al. Searching for SNPs with cloud computing. Genome Biol 2009; 10:R134
    • (2009) Genome Biol. , vol.10 , pp. R134
    • Langmead, B.1    Schatz, M.C.2    Lin, J.3
  • 94
    • 77954055600 scopus 로고    scopus 로고
    • Cloud computing for comparative genomics
    • Stein D.P., et al. Cloud computing for comparative genomics. BMC Bioinformatics 2010; 11:259
    • (2010) BMC Bioinformatics , vol.11 , pp. 259
    • Stein, D.P.1
  • 95
    • 84993102048 scopus 로고    scopus 로고
    • CEO interview: The InnoCentive model of open innovation
    • Allio R.J. CEO interview: the InnoCentive model of open innovation. Strategy &Leadership 2004; 32:4-9
    • (2004) Strategy &Leadership , vol.32 , pp. 4-9
    • Allio, R.J.1
  • 96
    • 79951469738 scopus 로고    scopus 로고
    • May the best analyst win
    • Carpenter J. May the best analyst win. Science 2011; 331:698-699
    • (2011) Science , vol.331 , pp. 698-699
    • Carpenter, J.1
  • 97
  • 98
    • 84860294442 scopus 로고    scopus 로고
    • End of the beginning and public health pharmacogenomics: Knowledge in 'Mode 2' and P5 medicine
    • Ozdemir V., et al. End of the beginning and public health pharmacogenomics: Knowledge in 'Mode 2' and P5 medicine. Current Pharmacogenomics in Personalized Medicine 2012; 10:1-6
    • (2012) Current Pharmacogenomics in Personalized Medicine , vol.10 , pp. 1-6
    • Ozdemir, V.1
  • 100
    • 84875990816 scopus 로고    scopus 로고
    • Differential expression analysis for pathways
    • in press
    • Haynes W., et. al. Differential expression analysis for pathways. PLoS Computational Biology 2013, in press
    • (2013) PLoS Computational Biology
    • Haynes, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.