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Volumn , Issue , 2010, Pages 499-502

Modeling sequence and function similarity between proteins for protein functional annotation

Author keywords

Bioinformatics; Biostatistics; Multiple sequence alignment

Indexed keywords

BIOLOGICAL RESEARCH; BIOSTATISTICS; DATA SETS; FUNCTION SIMILARITY; FUNCTIONAL ANNOTATION; GAIN INSIGHT; HIGH DEGREE OF VARIABILITY; MULTIPLE SEQUENCE ALIGNMENTS; MULTIPLE SEQUENCES; PAIR-WISE SEQUENCE ALIGNMENT ALGORITHMS; POTENTIAL SOLUTIONS; PROTEIN FUNCTIONS; SEQUENCE SIMILARITY; TRAINING SETS;

EID: 78649984360     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1851476.1851548     Document Type: Conference Paper
Times cited : (11)

References (23)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S.F., Madden, T.L., Schäffer, A.A., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 17 (1997), 3389-3402.
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3
  • 2
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • Ashburner, M., Ball, C.A., Blake, J.A., et al. Gene Ontology: tool for the unification of biology. Nat Genet 25, 1 (2000), 25-29.
    • (2000) Nat Genet , vol.25 , Issue.1 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 3
    • 33748940447 scopus 로고    scopus 로고
    • Analysis and comparison of benchmarks for multiple sequence alignment
    • Blackshields, G., Wallace, I.M., Larkin, M., and Higgins, D.G. Analysis and comparison of benchmarks for multiple sequence alignment. In Silico Biology 6, 4 (2006), 321-339.
    • (2006) Silico Biology , vol.6 , Issue.4 , pp. 321-339
    • Blackshields, G.1    Wallace, I.M.2    Larkin, M.3    Higgins, D.G.4
  • 4
    • 0034060929 scopus 로고    scopus 로고
    • Powers and pitfalls in sequence analysis: The 70% hurdle
    • Bork, P. Powers and pitfalls in sequence analysis: the 70% hurdle. Genome Research 10, 4 (2000), 398-400.
    • (2000) Genome Research , vol.10 , Issue.4 , pp. 398-400
    • Bork, P.1
  • 5
    • 0033119399 scopus 로고    scopus 로고
    • Errors in genome annotation
    • Brenner, S.E. Errors in genome annotation. Trends in Genetics 15, 4 (1999), 132-133.
    • (1999) Trends in Genetics , vol.15 , Issue.4 , pp. 132-133
    • Brenner, S.E.1
  • 7
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy, S.R. Profile hidden Markov models. Bioinformatics 14, 9 (1998), 755-763.
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 8
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough, J., Karplus, K., Hughey, R., and Chothia, C. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. Journal of Molecular Biology 313, 4 (2001), 903-919.
    • (2001) Journal of Molecular Biology , vol.313 , Issue.4 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 9
    • 34250790725 scopus 로고    scopus 로고
    • Estimating the annotation error rate of curated GO database sequence annotations
    • Jones, C., Brown, A., and Baumann, U. Estimating the annotation error rate of curated GO database sequence annotations. BMC Bioinformatics 8, 1 (2007), 170.
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 170
    • Jones, C.1    Brown, A.2    Baumann, U.3
  • 10
    • 2342526611 scopus 로고    scopus 로고
    • Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae
    • Kolker, E., Makarova, K.S., Shabalina, S., et al. Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Nucl. Acids Res. 32, 8 (2004), 2353-2361.
    • (2004) Nucl. Acids Res. , vol.32 , Issue.8 , pp. 2353-2361
    • Kolker, E.1    Makarova, K.S.2    Shabalina, S.3
  • 11
    • 13844316454 scopus 로고    scopus 로고
    • Global profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and improved functional annotations
    • Kolker, E., Picone, A.F., Galperin, M.Y., et al. Global profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and improved functional annotations. PNAS 102, 6 (2005), 2099-2104.
    • (2005) PNAS , vol.102 , Issue.6 , pp. 2099-2104
    • Kolker, E.1    Picone, A.F.2    Galperin, M.Y.3
  • 12
    • 0038444287 scopus 로고    scopus 로고
    • Initial proteome analysis of model microorganism haemophilus influenzae strain Rd KW20
    • Kolker, E., Purvine, S., Galperin, M.Y., et al. Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20. J. Bacteriol. 185, 15 (2003), 4593-4602.
    • (2003) J. Bacteriol. , vol.185 , Issue.15 , pp. 4593-4602
    • Kolker, E.1    Purvine, S.2    Galperin, M.Y.3
  • 14
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
    • Lord, P.W., Stevens, R.D., Brass, A., and Goble, C.A. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 19, 10 (2003), 1275-1283.
    • (2003) Bioinformatics , vol.19 , Issue.10 , pp. 1275-1283
    • Lord, P.W.1    Stevens, R.D.2    Brass, A.3    Goble, C.A.4
  • 16
    • 70449552832 scopus 로고    scopus 로고
    • A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions
    • Louie, B., Higdon, R., and Kolker, E. A Statistical Model of Protein Sequence Similarity and Function Similarity Reveals Overly-Specific Function Predictions. PLoS ONE 4, 10 (2009), e7546.
    • (2009) PLoS ONE , vol.4 , Issue.10
    • Louie, B.1    Higdon, R.2    Kolker, E.3
  • 18
  • 19
    • 0028341506 scopus 로고
    • Comparative analysis of multiple protein-sequence alignment methods
    • McClure, M.A., Vasi, T.K., and Fitch, W.M. Comparative analysis of multiple protein-sequence alignment methods. Molecular Biology and Evolution 11, 4 (1994), 571-592.
    • (1994) Molecular Biology and Evolution , vol.11 , Issue.4 , pp. 571-592
    • McClure, M.A.1    Vasi, T.K.2    Fitch, W.M.3
  • 20
  • 21
    • 0032962457 scopus 로고    scopus 로고
    • Twilight zone of protein sequence alignments
    • Rost, B. Twilight zone of protein sequence alignments. Protein Eng. 12, 2 (1999), 85-94.
    • (1999) Protein Eng. , vol.12 , Issue.2 , pp. 85-94
    • Rost, B.1
  • 22
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson, J., Plewniak, F., and Poch, O. A comprehensive comparison of multiple sequence alignment programs. Nucl. Acids Res. 27, 13 (1999), 2682-2690.
    • (1999) Nucl. Acids Res. , vol.27 , Issue.13 , pp. 2682-2690
    • Thompson, J.1    Plewniak, F.2    Poch, O.3
  • 23
    • 20444456581 scopus 로고    scopus 로고
    • Automatic annotation of protein function
    • Valencia, A. Automatic annotation of protein function. Current Opinion in Structural Biology 15, 3 (2005), 267-274.
    • (2005) Current Opinion in Structural Biology , vol.15 , Issue.3 , pp. 267-274
    • Valencia, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.