-
1
-
-
18744361871
-
Enhancement of cellular memory by reducing stochastic transitions
-
Acar, M., A. Becskei, and A. Van Oudenaarden, 2005 Enhancement of cellular memory by reducing stochastic transitions. Nature 435: 228-232.
-
(2005)
Nature
, vol.435
, pp. 228-232
-
-
Acar, M.1
Becskei, A.2
Van Oudenaarden, A.3
-
2
-
-
77957366856
-
A general mechanism for network-dosage compensation in gene circuits
-
Acar, M., B. F. Pando, F. H. Arnold, M. B. Elowitz, and A. Van Oudenaarden, 2010 A general mechanism for network-dosage compensation in gene circuits. Science 329: 1656-1660.
-
(2010)
Science
, vol.329
, pp. 1656-1660
-
-
Acar, M.1
Pando, B.F.2
Arnold, F.H.3
Elowitz, M.B.4
Van Oudenaarden, A.5
-
3
-
-
0019994521
-
Promoter occlusion: transcription through a promoter may inhibit its activity
-
Adhya, S., and M. Gottesman, 1982 Promoter occlusion: transcription through a promoter may inhibit its activity. Cell 29: 939-944.
-
(1982)
Cell
, vol.29
, pp. 939-944
-
-
Adhya, S.1
Gottesman, M.2
-
4
-
-
49349089594
-
Effects of gene orientation and use of multiple promoters on the expression of XYL1 and XYL2 in Saccharomyces cerevisiae
-
Bae, J. Y., J. Laplaza, and T. W. Jeffries, 2008 Effects of gene orientation and use of multiple promoters on the expression of XYL1 and XYL2 in Saccharomyces cerevisiae. Appl. Biochem. Biotechnol. 145: 69-78.
-
(2008)
Appl. Biochem. Biotechnol.
, vol.145
, pp. 69-78
-
-
Bae, J.Y.1
Laplaza, J.2
Jeffries, T.W.3
-
5
-
-
34848825637
-
Chromatin remodelling is a major source of coexpression of linked genes in yeast
-
Batada, N. N., A. O. Urrutia, and L. D. Hurst, 2007 Chromatin remodelling is a major source of coexpression of linked genes in yeast. Trends Genet. 23: 480-484.
-
(2007)
Trends Genet.
, vol.23
, pp. 480-484
-
-
Batada, N.N.1
Urrutia, A.O.2
Hurst, L.D.3
-
6
-
-
0028805856
-
A two-reporter gene system for the analysis of bi-directional transcription from the divergent MAL6T-MAL6S promoter in Saccharomyces cerevisiae
-
Bell, P. J., P. H. Bissinger, R. J. Evans, and I. W. Dawes, 1995 A two-reporter gene system for the analysis of bi-directional transcription from the divergent MAL6T-MAL6S promoter in Saccharomyces cerevisiae. Curr. Genet. 28: 441-446.
-
(1995)
Curr. Genet.
, vol.28
, pp. 441-446
-
-
Bell, P.J.1
Bissinger, P.H.2
Evans, R.J.3
Dawes, I.W.4
-
7
-
-
15444377148
-
Yeast systems for the commercial production of heterologous proteins
-
Buckholz, R. G., and M. A. Gleeson, 1991 Yeast systems for the commercial production of heterologous proteins. Biotechnology (N. Y.) 9: 1067-1072.
-
(1991)
Biotechnology
, vol.9
, pp. 1067-1072
-
-
Buckholz, R.G.1
Gleeson, M.A.2
-
8
-
-
69249151761
-
Control and signal processing by transcriptional interference
-
Buetti-Dinh, A., R. Ungricht, J. Z. Kelemen, C. Shetty, P. Ratna et al., 2009 Control and signal processing by transcriptional interference. Mol. Syst. Biol. 5: 300.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 300
-
-
Buetti-Dinh, A.1
Ungricht, R.2
Kelemen, J.Z.3
Shetty, C.4
Ratna, P.5
-
9
-
-
2942574509
-
Transcriptional interference between convergent promoters caused by elongation over the promoter
-
Callen, B. P., K. E. Shearwin, and J. B. Egan, 2004 Transcriptional interference between convergent promoters caused by elongation over the promoter. Mol. Cell 14: 647-656.
-
(2004)
Mol. Cell
, vol.14
, pp. 647-656
-
-
Callen, B.P.1
Shearwin, K.E.2
Egan, J.B.3
-
10
-
-
0034724857
-
Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease
-
Cavazzana-Calvo, M., S. Hacein-Bey, G. De Saint Basile, F. Gross, E. Yvon et al., 2000 Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease. Science 288: 669-672.
-
(2000)
Science
, vol.288
, pp. 669-672
-
-
Cavazzana-Calvo, M.1
Hacein-Bey, S.2
De Saint Basile, G.3
Gross, F.4
Yvon, E.5
-
11
-
-
77951888464
-
Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions
-
Chen, W. H., J. De Meaux, and M. J. Lercher, 2010 Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions. BMC Genomics 11: 178.
-
(2010)
BMC Genomics
, vol.11
, pp. 178
-
-
Chen, W.H.1
De Meaux, J.2
Lercher, M.J.3
-
12
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
Churchman, L. S., and J. S. Weissman, 2011 Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469: 368-373.
-
(2011)
Nature
, vol.469
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
13
-
-
77954863747
-
Production of heterologous proteins in plants: strategies for optimal expression
-
Desai, P. N., N. Shrivastava, and H. Padh, 2010 Production of heterologous proteins in plants: strategies for optimal expression. Biotechnol. Adv. 28: 427-435.
-
(2010)
Biotechnol. Adv.
, vol.28
, pp. 427-435
-
-
Desai, P.N.1
Shrivastava, N.2
Padh, H.3
-
14
-
-
70449686525
-
Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae
-
Flagfeldt, D. B., V. Siewers, L. Huang, and J. Nielsen, 2009 Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae. Yeast 26: 545-551.
-
(2009)
Yeast
, vol.26
, pp. 545-551
-
-
Flagfeldt, D.B.1
Siewers, V.2
Huang, L.3
Nielsen, J.4
-
15
-
-
77951915031
-
A RSC/ nucleosome complex determines chromatin architecture and facilitates activator binding
-
Floer, M., X. Wang, V. Prabhu, G. Berrozpe, S. Narayan et al., 2010 A RSC/ nucleosome complex determines chromatin architecture and facilitates activator binding. Cell 141: 407-418.
-
(2010)
Cell
, vol.141
, pp. 407-418
-
-
Floer, M.1
Wang, X.2
Prabhu, V.3
Berrozpe, G.4
Narayan, S.5
-
16
-
-
0028836545
-
Heterologous expression of genes in bacterial, fungal, animal, and Plant-cells
-
Frommer, W. B., and O. Ninnemann, 1995 Heterologous expression of genes in bacterial, fungal, animal, and Plant-cells. Annu. Rev. Plant Physiol. Plant Mol. Biol. 46: 419-444.
-
(1995)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.46
, pp. 419-444
-
-
Frommer, W.B.1
Ninnemann, O.2
-
17
-
-
34347206860
-
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
-
Gietz, R. D., and R. H. Schiestl, 2007 High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat. Protoc. 2: 31-34.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 31-34
-
-
Gietz, R.D.1
Schiestl, R.H.2
-
18
-
-
84855871320
-
Analysis of nucleosome positioning using a nucleosome-scanning assay
-
Infante, J. J., G. L. Law, and E. T. Young, 2012 Analysis of nucleosome positioning using a nucleosome-scanning assay. Methods Mol. Biol. 833: 63-87.
-
(2012)
Methods Mol. Biol.
, vol.833
, pp. 63-87
-
-
Infante, J.J.1
Law, G.L.2
Young, E.T.3
-
19
-
-
33645474133
-
The UGA3-GLT1 intergenic region constitutes a promoter whose bidirectional nature is determined by chromatin organization in Saccharomyces cerevisiae
-
Ishida, C., C. Aranda, L. Valenzuela, L. Riego, A. Deluna et al., 2006 The UGA3-GLT1 intergenic region constitutes a promoter whose bidirectional nature is determined by chromatin organization in Saccharomyces cerevisiae. Mol. Microbiol. 59: 1790-1806.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1790-1806
-
-
Ishida, C.1
Aranda, C.2
Valenzuela, L.3
Riego, L.4
Deluna, A.5
-
20
-
-
18844362113
-
Strategies for efficient production of heterologous proteins in Escherichia coli
-
Jana, S., and J. K. Deb, 2005 Strategies for efficient production of heterologous proteins in Escherichia coli. Appl. Microbiol. Biotechnol. 67: 289- 298.
-
(2005)
Appl. Microbiol. Biotechnol.
, vol.67
-
-
Jana, S.1
Deb, J.K.2
-
21
-
-
84861379650
-
Distal chromatin structure influences local nucleosome positions and gene expression
-
Jansen, A., E. Van Der Zande, W. Meert, G. R. Fink, and K. J. Verstrepen, 2012 Distal chromatin structure influences local nucleosome positions and gene expression. Nucleic Acids Res. 40: 3870-3885.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3870-3885
-
-
Jansen, A.1
Van Der Zande, E.2
Meert, W.3
Fink, G.R.4
Verstrepen, K.J.5
-
22
-
-
0021471049
-
Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae
-
Johnston, M., and R. W. Davis, 1984 Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae. Mol. Cell. Biol. 4: 1440-1448.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 1440-1448
-
-
Johnston, M.1
Davis, R.W.2
-
23
-
-
0037315819
-
Systematic discovery of new genes in the Saccharomyces cerevisiae genome
-
Kessler, M. M., Q. Zeng, S. Hogan, R. Cook, A. J. Morales et al., 2003 Systematic discovery of new genes in the Saccharomyces cerevisiae genome. Genome Res. 13: 264-271.
-
(2003)
Genome Res.
, vol.13
, pp. 264-271
-
-
Kessler, M.M.1
Zeng, Q.2
Hogan, S.3
Cook, R.4
Morales, A.J.5
-
24
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp, S., Z. Zhang, and T. Hwa, 2009 Growth rate-dependent global effects on gene expression in bacteria. Cell 139: 1366-1375.
-
(2009)
Cell
, vol.139
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
25
-
-
34250324685
-
Transcription factor binding and modified histones in human bidirectional promoters
-
Lin, J. M., P. J. Collins, N. D. Trinklein, Y. Fu, H. Xi et al., 2007 Transcription factor binding and modified histones in human bidirectional promoters. Genome Res. 17: 818-827.
-
(2007)
Genome Res.
, vol.17
, pp. 818-827
-
-
Lin, J.M.1
Collins, P.J.2
Trinklein, N.D.3
Fu, Y.4
Xi, H.5
-
26
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
Longtine, M. S., A. McKenzie, 3rd, D. J. DeMarini, N. G. Shah, A. Wach et al., 1998 Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953- 961.
-
(1998)
Yeast
, vol.14
-
-
Longtine, M.S.1
McKenzie, A.2
DeMarini, D.J.3
Shah, N.G.4
Wach, A.5
-
27
-
-
2942560254
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
-
Martens, J. A., L. Laprade, and F. Winston, 2004 Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 429: 571-574.
-
(2004)
Nature
, vol.429
, pp. 571-574
-
-
Martens, J.A.1
Laprade, L.2
Winston, F.3
-
28
-
-
34548555700
-
Transcriptional interference: an unexpected layer of complexity in gene regulation
-
Mazo, A., J. W. Hodgson, S. Petruk, Y. Sedkov, and H. W. Brock, 2007 Transcriptional interference: an unexpected layer of complexity in gene regulation. J. Cell Sci. 120: 2755-2761.
-
(2007)
J. Cell Sci.
, vol.120
, pp. 2755-2761
-
-
Mazo, A.1
Hodgson, J.W.2
Petruk, S.3
Sedkov, Y.4
Brock, H.W.5
-
29
-
-
39149119250
-
Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
-
Michalak, P., 2008 Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. Genomics 91: 243-248.
-
(2008)
Genomics
, vol.91
, pp. 243-248
-
-
Michalak, P.1
-
30
-
-
0013626107
-
Isolation and Nucleotide-Sequence Analysis of the Ura3 (Orotidine 59-Phosphate Decarboxylase) Gene of Kluyveromyces-Lactis
-
Mizukami, M., and F. Hishinuma, 1988 Isolation and Nucleotide-Sequence Analysis of the Ura3 (Orotidine 59-Phosphate Decarboxylase) Gene of Kluyveromyces-Lactis. Agric. Biol. Chem. 52: 3067-3071.
-
(1988)
Agric. Biol. Chem.
, vol.52
, pp. 3067-3071
-
-
Mizukami, M.1
Hishinuma, F.2
-
31
-
-
66449107633
-
Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter
-
Palmer, A. C., A. Ahlgren-Berg, J. B. Egan, I. B. Dodd, and K. E. Shearwin, 2009 Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter. Mol. Cell 34: 545-555.
-
(2009)
Mol. Cell
, vol.34
, pp. 545-555
-
-
Palmer, A.C.1
Ahlgren-Berg, A.2
Egan, J.B.3
Dodd, I.B.4
Shearwin, K.E.5
-
32
-
-
34247256762
-
Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality
-
2002 Transcriptional collision between Purmann
-
Prescott, E. M., and N. J. Proudfoot, 2002 Transcriptional collision between Purmann, A., J. Toedling, M. Schueler, P. Carninci, H. Lehrach et al., 2007 Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality. Genomics 89: 580-587.
-
(2007)
Genomics
, vol.89
, pp. 580-587
-
-
Prescott, E.M.1
Proudfoot, N.J.2
Toedling, J.3
Schueler, M.4
Carninci, P.5
Lehrach, H.6
-
33
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj, A., C. S. Peskin, D. Tranchina, D. Y. Vargas, and S. Tyagi, 2006 Stochastic mRNA synthesis in mammalian cells. PLoS Biol. 4: e309.
-
(2006)
PLoS Biol.
, vol.4
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
34
-
-
0026778048
-
Foreign gene expression in yeast: a review
-
Romanos, M. A., C. A. Scorer, and J. J. Clare, 1992 Foreign gene expression in yeast: a review. Yeast 8: 423-488.
-
(1992)
Yeast
, vol.8
, pp. 423-488
-
-
Romanos, M.A.1
Scorer, C.A.2
Clare, J.J.3
-
35
-
-
19444377759
-
Transcriptional interference- a crash course
-
Shearwin, K. E., B. P. Callen, and J. B. Egan, 2005 Transcriptional interference- a crash course. Trends Genet. 21: 339-345.
-
(2005)
Trends Genet.
, vol.21
, pp. 339-345
-
-
Shearwin, K.E.1
Callen, B.P.2
Egan, J.B.3
-
36
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
-
Shivaswamy, S., A. Bhinge, Y. Zhao, S. Jones, M. Hirst et al., 2008 Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol. 6: e65.
-
(2008)
PLoS Biol.
, vol.6
-
-
Shivaswamy, S.1
Bhinge, A.2
Zhao, Y.3
Jones, S.4
Hirst, M.5
-
37
-
-
12544251077
-
A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli
-
Sneppen, K., I. B. Dodd, K. E. Shearwin, A. C. Palmer, R. A. Schubert et al., 2005 A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli. J. Mol. Biol. 346: 399- 409.
-
(2005)
J. Mol. Biol.
, vol.346
-
-
Sneppen, K.1
Dodd, I.B.2
Shearwin, K.E.3
Palmer, A.C.4
Schubert, R.A.5
-
38
-
-
33747666218
-
Overview of bacterial expression systems for heterologous protein production: from molecular and biochemical fundamentals to commercial systems
-
Terpe, K., 2006 Overview of bacterial expression systems for heterologous protein production: from molecular and biochemical fundamentals to commercial systems. Appl. Microbiol. Biotechnol. 72: 211-222.
-
(2006)
Appl. Microbiol. Biotechnol.
, vol.72
, pp. 211-222
-
-
Terpe, K.1
-
39
-
-
0347135948
-
An abundance of bidirectional promoters in the human genome
-
Trinklein, N. D., S. F. Aldred, S. J. Hartman, D. I. Schroeder, R. P. Otillar et al., 2004 An abundance of bidirectional promoters in the human genome. Genome Res. 14: 62-66.
-
(2004)
Genome Res.
, vol.14
, pp. 62-66
-
-
Trinklein, N.D.1
Aldred, S.F.2
Hartman, S.J.3
Schroeder, D.I.4
Otillar, R.P.5
-
40
-
-
84861919568
-
The dual lives of bidirectional promoters
-
Wakano, C., J. S. Byun, L. J. Di, and K. Gardner, 2012 The dual lives of bidirectional promoters. Biochim. Biophys. Acta 1819: 688-693.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 688-693
-
-
Wakano, C.1
Byun, J.S.2
Di, L.J.3
Gardner, K.4
-
41
-
-
79960084618
-
Transcriptional coupling of neighboring genes and gene expression noise: evidence that gene orientation and noncoding transcripts are modulators of noise
-
Wang, G. Z., M. J. Lercher, and L. D. Hurst, 2011 Transcriptional coupling of neighboring genes and gene expression noise: evidence that gene orientation and noncoding transcripts are modulators of noise. Genome Biol. Evol. 3: 320-331.
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 320-331
-
-
Wang, G.Z.1
Lercher, M.J.2
Hurst, L.D.3
-
42
-
-
79952756695
-
Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes
-
Woo, Y. H., and W. H. Li, 2011 Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes. Proc. Natl. Acad. Sci. USA 108: 3306-3311.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3306-3311
-
-
Woo, Y.H.1
Li, W.H.2
-
43
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu, Z., W. Wei, J. Gagneur, F. Perocchi, S. Clauder-Munster et al., 2009 Bidirectional promoters generate pervasive transcription in yeast. Nature 457: 1033-1037.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Munster, S.5
|