-
1
-
-
70649104604
-
Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)
-
Acosta M.C., Premoli A.C. Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae). Mol. Phylogenet. Evol. 2010, 54:235-242.
-
(2010)
Mol. Phylogenet. Evol.
, vol.54
, pp. 235-242
-
-
Acosta, M.C.1
Premoli, A.C.2
-
2
-
-
0034937408
-
Phylogenetic analysis of asterids based on sequences of four genes
-
Albach D.C., Soltis D.E., Soltis P.S., Olmstead R.G. Phylogenetic analysis of asterids based on sequences of four genes. Ann. Mo. Bot. Gard. 2001, 88:163-212.
-
(2001)
Ann. Mo. Bot. Gard.
, vol.88
, pp. 163-212
-
-
Albach, D.C.1
Soltis, D.E.2
Soltis, P.S.3
Olmstead, R.G.4
-
3
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
-
APG, 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161, 105-121.
-
(2009)
Bot. J. Linn. Soc.
, vol.161
, pp. 105-121
-
-
-
4
-
-
77955991477
-
The age and diversification of the angiosperms re-revisited
-
Bell C.D., Soltis D.E., Soltis P.S. The age and diversification of the angiosperms re-revisited. Am. J. Bot. 2010, 97:1296-1303.
-
(2010)
Am. J. Bot.
, vol.97
, pp. 1296-1303
-
-
Bell, C.D.1
Soltis, D.E.2
Soltis, P.S.3
-
5
-
-
0029610067
-
Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution
-
Birky C.W. Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proc. Natl. Acad. Sci. USA 1995, 92:11331-11338.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11331-11338
-
-
Birky, C.W.1
-
6
-
-
0035671887
-
The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, models
-
Birky C.W. The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, models. Annu. Rev. Genet. 2001, 35:125-148.
-
(2001)
Annu. Rev. Genet.
, vol.35
, pp. 125-148
-
-
Birky, C.W.1
-
7
-
-
0035678943
-
A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies
-
Bremer K., Backlund A., Sennblad B., Swenson U., Andreasen K., Hjertson M., Lundberg J., Backlund M., Bremer B. A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies. Pl. Syst. Evol. 2001, 229:137-169.
-
(2001)
Pl. Syst. Evol.
, vol.229
, pp. 137-169
-
-
Bremer, K.1
Backlund, A.2
Sennblad, B.3
Swenson, U.4
Andreasen, K.5
Hjertson, M.6
Lundberg, J.7
Backlund, M.8
Bremer, B.9
-
8
-
-
3242670510
-
Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification
-
Bremer K., Friis E., Bremer B. Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification. Syst. Biol. 2004, 53:496-505.
-
(2004)
Syst. Biol.
, vol.53
, pp. 496-505
-
-
Bremer, K.1
Friis, E.2
Bremer, B.3
-
9
-
-
33747338447
-
Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada dugdale)
-
Buckley T.R., Cordeiro M., Marshall D.C., Simon C. Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada dugdale). Syst. Biol. 2006, 55:411-425.
-
(2006)
Syst. Biol.
, vol.55
, pp. 411-425
-
-
Buckley, T.R.1
Cordeiro, M.2
Marshall, D.C.3
Simon, C.4
-
10
-
-
65349083699
-
Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms
-
Burleigh J.G., Hilu K.W., Soltis D.E. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms. BMC Evol. Biol. 2009, 17:61.
-
(2009)
BMC Evol. Biol.
, vol.17
, pp. 61
-
-
Burleigh, J.G.1
Hilu, K.W.2
Soltis, D.E.3
-
11
-
-
79951569533
-
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
-
Burleigh J.G., Bansal M.S., Eulenstein O., Hartmann S., Wehe A., Vision T.J. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. Syst. Biol. 2011, 60:117-125.
-
(2011)
Syst. Biol.
, vol.60
, pp. 117-125
-
-
Burleigh, J.G.1
Bansal, M.S.2
Eulenstein, O.3
Hartmann, S.4
Wehe, A.5
Vision, T.J.6
-
12
-
-
34848884808
-
Towards a phylogenetic nomenclature of Tracheophyta
-
Cantino P.D., Doyle J.A., Graham S.W., Judd W.S., Olmstead R.G., Soltis D.E., Soltis P.S., Donoghue M.J. Towards a phylogenetic nomenclature of Tracheophyta. Taxon 2007, 56:822-846.
-
(2007)
Taxon
, vol.56
, pp. 822-846
-
-
Cantino, P.D.1
Doyle, J.A.2
Graham, S.W.3
Judd, W.S.4
Olmstead, R.G.5
Soltis, D.E.6
Soltis, P.S.7
Donoghue, M.J.8
-
13
-
-
80053051842
-
Ancient hybridization and underestimated species diversity in Asian striped squirrels (genus Tamiops): inference from paternal, maternal and biparental markers
-
Chang S.W., Oshida T., Endo H., Nguyen S.T., Dang C.N., Nguyen D.X., Jiang X., Li Z.J., Lin L.K. Ancient hybridization and underestimated species diversity in Asian striped squirrels (genus Tamiops): inference from paternal, maternal and biparental markers. J. Zool. 2011, 285:128-138.
-
(2011)
J. Zool.
, vol.285
, pp. 128-138
-
-
Chang, S.W.1
Oshida, T.2
Endo, H.3
Nguyen, S.T.4
Dang, C.N.5
Nguyen, D.X.6
Jiang, X.7
Li, Z.J.8
Lin, L.K.9
-
14
-
-
0000031660
-
Phylogenetics of seed plants: an analysis of nucleotide-sequences from the plastid gene rbcL
-
Chase M.W., Soltis D.E., Olmstead R.G., Morgan D., Les D.H., Mishler B.D., Duvall M.R., Price R.A., Hills H.G., Qiu Y.L., Kron K.A., Rettig J.H., Conti E., Palmer J.D., Manhart J.R., Sytsma K.J., Michaels H.J., Kress W.J., Karol K.G., Clark W.D., Hedren M., Gaut B.S., Jansen R.K., Kim K.J., Wimpee C.F., Smith J.F., Furnier G.R., Strauss S.H., Xiang Q.Y., Plunkett G.M., Soltis P.S., Swensen S.M., Williams S.E., Gadek P.A., Quinn C.J., Eguiarte L.E., Golenberg E., Learn G.H., Graham S.W., Barrett S.C.H., Dayanandan S., Albert V.A. Phylogenetics of seed plants: an analysis of nucleotide-sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard. 1993, 80:528-580.
-
(1993)
Ann. Mo. Bot. Gard.
, vol.80
, pp. 528-580
-
-
Chase, M.W.1
Soltis, D.E.2
Olmstead, R.G.3
Morgan, D.4
Les, D.H.5
Mishler, B.D.6
Duvall, M.R.7
Price, R.A.8
Hills, H.G.9
Qiu, Y.L.10
Kron, K.A.11
Rettig, J.H.12
Conti, E.13
Palmer, J.D.14
Manhart, J.R.15
Sytsma, K.J.16
Michaels, H.J.17
Kress, W.J.18
Karol, K.G.19
Clark, W.D.20
Hedren, M.21
Gaut, B.S.22
Jansen, R.K.23
Kim, K.J.24
Wimpee, C.F.25
Smith, J.F.26
Furnier, G.R.27
Strauss, S.H.28
Xiang, Q.Y.29
Plunkett, G.M.30
Soltis, P.S.31
Swensen, S.M.32
Williams, S.E.33
Gadek, P.A.34
Quinn, C.J.35
Eguiarte, L.E.36
Golenberg, E.37
Learn, G.H.38
Graham, S.W.39
Barrett, S.C.H.40
Dayanandan, S.41
Albert, V.A.42
more..
-
15
-
-
0001472866
-
Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification
-
CSIRO Publishing, Collingwood, K.L. Wilson, D.A. Morrison (Eds.)
-
Chase M.W., Soltis D.E., Soltis P.S., Rudall P.J., Fay M.F., Hahn W.J., Sullivan S., Joseph J., Molvray M., Kores P.J., Givnish T.J., Sytsma K.J., Pires J.C. Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification. Monocots: Systematics and Evolution 2000, 3-16. CSIRO Publishing, Collingwood. K.L. Wilson, D.A. Morrison (Eds.).
-
(2000)
Monocots: Systematics and Evolution
, pp. 3-16
-
-
Chase, M.W.1
Soltis, D.E.2
Soltis, P.S.3
Rudall, P.J.4
Fay, M.F.5
Hahn, W.J.6
Sullivan, S.7
Joseph, J.8
Molvray, M.9
Kores, P.J.10
Givnish, T.J.11
Sytsma, K.J.12
Pires, J.C.13
-
16
-
-
33644787447
-
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
-
Chen F., Mackey A.J., Stoeckert C.J., Roos D.S. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. 2006, 34:D363-D368.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D363-D368
-
-
Chen, F.1
Mackey, A.J.2
Stoeckert, C.J.3
Roos, D.S.4
-
17
-
-
0001635951
-
Rapid screening method to detect potential biparental inheritance of plastid DNA and results over 200 angiosperm species
-
Corriveau J.L., Coleman A.W. Rapid screening method to detect potential biparental inheritance of plastid DNA and results over 200 angiosperm species. Am. J. Bot. 1988, 75:1443-1458.
-
(1988)
Am. J. Bot.
, vol.75
, pp. 1443-1458
-
-
Corriveau, J.L.1
Coleman, A.W.2
-
18
-
-
84880786191
-
Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes
-
Cui R., Schumer M., Kruesi K., Walter R., Andolfatto P., Rosenthal G.G. Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution 2013, 67:2166-2179.
-
(2013)
Evolution
, vol.67
, pp. 2166-2179
-
-
Cui, R.1
Schumer, M.2
Kruesi, K.3
Walter, R.4
Andolfatto, P.5
Rosenthal, G.G.6
-
19
-
-
33646928341
-
Discordance of species trees with their most likely gene trees
-
Degnan J.H., Rosenberg N.A. Discordance of species trees with their most likely gene trees. PLoS Genet. 2006, 2:e68.
-
(2006)
PLoS Genet.
, vol.2
, pp. e68
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
20
-
-
65649131928
-
Gene tree discordance, phylogenetic inference and the multispecies coalescent
-
Degnan J.H., Rosenberg N.A. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 2009, 24:332-340.
-
(2009)
Trends Ecol. Evol.
, vol.24
, pp. 332-340
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
21
-
-
17744394753
-
Phylogenomics and the reconstruction of the tree of life
-
Delsuc F., Brinkmann F.H., Philippe H. Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 2005, 6:361-375.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 361-375
-
-
Delsuc, F.1
Brinkmann, F.H.2
Philippe, H.3
-
22
-
-
0000989175
-
Gene trees and species trees - molecular systematics as one-character taxonomy
-
Doyle J.J. Gene trees and species trees - molecular systematics as one-character taxonomy. Syst. Bot. 1992, 17:144-163.
-
(1992)
Syst. Bot.
, vol.17
, pp. 144-163
-
-
Doyle, J.J.1
-
23
-
-
77950191132
-
Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
-
Duarte J.M., Wall P.K., Edger P.P., Landherr L.L., Ma H., Pires J.C., Leebens-Mack J., dePamphilis C.W. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol. Biol. 2010, 10:61.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 61
-
-
Duarte, J.M.1
Wall, P.K.2
Edger, P.P.3
Landherr, L.L.4
Ma, H.5
Pires, J.C.6
Leebens-Mack, J.7
dePamphilis, C.W.8
-
24
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
Dunn C.W., Hejnol A., Matus D.Q., Pang K., Browne W.E., Smith S.A., Seaver E., Rouse G.W., Obst M., Edgecombe G.D., et al. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 2008, 452:745-749.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
Smith, S.A.6
Seaver, E.7
Rouse, G.W.8
Obst, M.9
Edgecombe, G.D.10
-
25
-
-
33748329457
-
Floral structure and systematics in four orders of rosids, including a broad survey of floral mucilage cells
-
Endress P.K., Matthews M.L. Floral structure and systematics in four orders of rosids, including a broad survey of floral mucilage cells. Plant Syst. Evol. 2006, 260:223-251.
-
(2006)
Plant Syst. Evol.
, vol.260
, pp. 223-251
-
-
Endress, P.K.1
Matthews, M.L.2
-
26
-
-
84877285063
-
Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants
-
Endress P.K., Davis C.C., Matthews M.L. Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants. Ann. Bot. 2013, 111:969-985.
-
(2013)
Ann. Bot.
, vol.111
, pp. 969-985
-
-
Endress, P.K.1
Davis, C.C.2
Matthews, M.L.3
-
27
-
-
0028085010
-
Maternal inheritance of chloroplast genome and paternal inheritance of mitochondrial genome in bananas (Musa acuminate)
-
Fauré S., Noyer J.L., Carreel F., Horry J.P., Bakry F., Lanaud C. Maternal inheritance of chloroplast genome and paternal inheritance of mitochondrial genome in bananas (Musa acuminate). Curr. Genet. 1994, 25:265-269.
-
(1994)
Curr. Genet.
, vol.25
, pp. 265-269
-
-
Fauré, S.1
Noyer, J.L.2
Carreel, F.3
Horry, J.P.4
Bakry, F.5
Lanaud, C.6
-
28
-
-
78650511270
-
Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
-
Finet C., Timme R.E., Delwiche C.F., Marlétaz F. Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Curr. Biol. 2010, 21:2217-2222.
-
(2010)
Curr. Biol.
, vol.21
, pp. 2217-2222
-
-
Finet, C.1
Timme, R.E.2
Delwiche, C.F.3
Marlétaz, F.4
-
29
-
-
12344282043
-
A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods
-
Gibson A., Gowri-Shankar V., Higgs P.G., Rattray M. A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods. Mol. Biol. Evol. 2005, 22:251-264.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 251-264
-
-
Gibson, A.1
Gowri-Shankar, V.2
Higgs, P.G.3
Rattray, M.4
-
30
-
-
34447645928
-
Phylogeny of the monocotyledons based on the highly informative plastid gene ndhF: evidence for widespread concerted convergence
-
Rancho Santa Ana Botanic Garden, California, J.T. Columbus, E.A. Friar, J.M. Porter, L.M. Prince, M.G. Simpson (Eds.)
-
Givnish T.J., Pires J.C., Graham S.W., McPherson M.A., Prince L.M., Patterson T.B., Rai H.S., Roalson E.R., Evans T.M., Hahn W.J., Millam K.C., Meerow A.W., Molvray M., Kores P., O'Brien H.E., Kress W.J., Hall J., Sytsma K.J. Phylogeny of the monocotyledons based on the highly informative plastid gene ndhF: evidence for widespread concerted convergence. Monocots: Comparative Biology and Evolution Excluding Poales 2006, 28-51. Rancho Santa Ana Botanic Garden, California. J.T. Columbus, E.A. Friar, J.M. Porter, L.M. Prince, M.G. Simpson (Eds.).
-
(2006)
Monocots: Comparative Biology and Evolution Excluding Poales
, pp. 28-51
-
-
Givnish, T.J.1
Pires, J.C.2
Graham, S.W.3
McPherson, M.A.4
Prince, L.M.5
Patterson, T.B.6
Rai, H.S.7
Roalson, E.R.8
Evans, T.M.9
Hahn, W.J.10
Millam, K.C.11
Meerow, A.W.12
Molvray, M.13
Kores, P.14
O'Brien, H.E.15
Kress, W.J.16
Hall, J.17
Sytsma, K.J.18
-
31
-
-
78650470488
-
Assembling the tree of the monocotyledons: plastome sequence phylogeny and evolution of Poales
-
Givnish T.J., Ames M., McNeal J.R., dePamphilis C.W., Graham S.W., Pires J.C., Stevenson D.W., Zomlefer W.B., Briggs B.G., Duvall M.R., Moore M.J., Heaney J.M., Soltis D.E., Soltis P.S., Thiele K., Leebens-Mack J.H. Assembling the tree of the monocotyledons: plastome sequence phylogeny and evolution of Poales. Ann. Mo. Bot. Gard. 2010, 97:584-616.
-
(2010)
Ann. Mo. Bot. Gard.
, vol.97
, pp. 584-616
-
-
Givnish, T.J.1
Ames, M.2
McNeal, J.R.3
dePamphilis, C.W.4
Graham, S.W.5
Pires, J.C.6
Stevenson, D.W.7
Zomlefer, W.B.8
Briggs, B.G.9
Duvall, M.R.10
Moore, M.J.11
Heaney, J.M.12
Soltis, D.E.13
Soltis, P.S.14
Thiele, K.15
Leebens-Mack, J.H.16
-
32
-
-
0000365320
-
Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed by globin sequences
-
Goodman M., Czelusniak J., Moore G.W., Romero-Herrera A.E., Matsuda G. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed by globin sequences. Syst. Zool. 1979, 28:132-163.
-
(1979)
Syst. Zool.
, vol.28
, pp. 132-163
-
-
Goodman, M.1
Czelusniak, J.2
Moore, G.W.3
Romero-Herrera, A.E.4
Matsuda, G.5
-
33
-
-
84861122810
-
GTP supertrees from unrooted gene trees: linear time algorithms for NNI based local searches
-
Springer, Berlin
-
Górecki P., Burleigh J.G., Eulenstein O. GTP supertrees from unrooted gene trees: linear time algorithms for NNI based local searches. Bioinformatics Research and Applications 2012, 102-114. Springer, Berlin.
-
(2012)
Bioinformatics Research and Applications
, pp. 102-114
-
-
Górecki, P.1
Burleigh, J.G.2
Eulenstein, O.3
-
35
-
-
38949143348
-
Robust inference of monocot deep phylogeny using an expanded multigene plastid data set
-
Graham S.W., Zgurski J.M., McPherson M.A., Cherniawsky D.M., Saarela J.M., Horne E.S.C., Smith S.Y., Wong W.A., O'Brien H.E., Pires J.C., Olmstead R.G., Chase M.W., Rai H.S. Robust inference of monocot deep phylogeny using an expanded multigene plastid data set. Aliso 2006, 22:3-20.
-
(2006)
Aliso
, vol.22
, pp. 3-20
-
-
Graham, S.W.1
Zgurski, J.M.2
McPherson, M.A.3
Cherniawsky, D.M.4
Saarela, J.M.5
Horne, E.S.C.6
Smith, S.Y.7
Wong, W.A.8
O'Brien, H.E.9
Pires, J.C.10
Olmstead, R.G.11
Chase, M.W.12
Rai, H.S.13
-
36
-
-
2442667686
-
Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous
-
Harrison G.A., McLenachan P.A., Phillips M.J., Slack K.E., Cooper A., Penny D. Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous. Mol. Biol. Evol. 2004, 21:974-983.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 974-983
-
-
Harrison, G.A.1
McLenachan, P.A.2
Phillips, M.J.3
Slack, K.E.4
Cooper, A.5
Penny, D.6
-
37
-
-
0029096504
-
Phylogenetic place of mitochondrion-lacking protozoan, Giardia lamblia, inferred from amino acid sequences of elongation factor 2
-
Hashimoto T., Nakamura Y., Kamaishi T., Nakamura F., Adachi J., Okamoto K., Hasegawa M. Phylogenetic place of mitochondrion-lacking protozoan, Giardia lamblia, inferred from amino acid sequences of elongation factor 2. Mol. Biol. Evol. 1995, 12:782-793.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 782-793
-
-
Hashimoto, T.1
Nakamura, Y.2
Kamaishi, T.3
Nakamura, F.4
Adachi, J.5
Okamoto, K.6
Hasegawa, M.7
-
38
-
-
0031857115
-
Differential transmission of the Cucumis organellar genomes
-
Havey M.J., McCreight J.D., Rhodes B., Taurick G. Differential transmission of the Cucumis organellar genomes. Theor. Appl. Genet. 1998, 97:122-128.
-
(1998)
Theor. Appl. Genet.
, vol.97
, pp. 122-128
-
-
Havey, M.J.1
McCreight, J.D.2
Rhodes, B.3
Taurick, G.4
-
39
-
-
0347723872
-
Angiosperm phylogeny based on matK sequence information
-
Hilu K.W., Borsch T., Müller K., Soltis D.E., Soltis P.S., Savolainen V., Chase M.W., Powell M.P., Alice L.A., Evans R., Sauquet H., Neinhuis C., Slotta T.A.B., Rohwer J.G., Campbell C.S., Chatrou L.W. Angiosperm phylogeny based on matK sequence information. Am. J. Bot. 2003, 90:1758-1776.
-
(2003)
Am. J. Bot.
, vol.90
, pp. 1758-1776
-
-
Hilu, K.W.1
Borsch, T.2
Müller, K.3
Soltis, D.E.4
Soltis, P.S.5
Savolainen, V.6
Chase, M.W.7
Powell, M.P.8
Alice, L.A.9
Evans, R.10
Sauquet, H.11
Neinhuis, C.12
Slotta, T.A.B.13
Rohwer, J.G.14
Campbell, C.S.15
Chatrou, L.W.16
-
41
-
-
49249091441
-
Using supernetworks to distinguish hybridization from incomplete lineage sorting
-
Holland B.R., Benthin S., Lockhart P.J., Moulton V., Huber K.T. Using supernetworks to distinguish hybridization from incomplete lineage sorting. BMC Evol. Biol. 2008, 8:202.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 202
-
-
Holland, B.R.1
Benthin, S.2
Lockhart, P.J.3
Moulton, V.4
Huber, K.T.5
-
42
-
-
0000424609
-
Testing the constant-rate neutral allele model with protein sequence data
-
Hudson R.R. Testing the constant-rate neutral allele model with protein sequence data. Evolution 1983, 37:203-217.
-
(1983)
Evolution
, vol.37
, pp. 203-217
-
-
Hudson, R.R.1
-
43
-
-
26444512722
-
Reconstruction of reticulate networks from gene trees
-
Springer, Heidelberg
-
Huson D.H., Klöpper T., Lockhart P.J., Steel M.A. Reconstruction of reticulate networks from gene trees. Proceedings of the Ninth International Conference on Research in Computational Molecular Biology 2005, 233-249. Springer, Heidelberg.
-
(2005)
Proceedings of the Ninth International Conference on Research in Computational Molecular Biology
, pp. 233-249
-
-
Huson, D.H.1
Klöpper, T.2
Lockhart, P.J.3
Steel, M.A.4
-
44
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen R.K., Cai Z., Raubeson L.A., Daniell H., Depamphilis C.W., Leebens-Mack M.J., Muller K.F., Guisinger-Bellian M., Haberle R.C., Hansen A.K. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc. Natl. Acad. Sci. USA 2007, 104:19369-19374.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
Depamphilis, C.W.5
Leebens-Mack, M.J.6
Muller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
-
45
-
-
1842437489
-
A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values
-
Jerrold I., Davis D.W., Stevenson, Ole G.P.S., Lisa M., Campbell J.V., Freudenstein D.H., Goldman C.R., Hardy F.A., Michelangeli M.P., Simmons C.D., Specht F.V.S., Maria G. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values. Syst. Bot. 2004, 29:467-510.
-
(2004)
Syst. Bot.
, vol.29
, pp. 467-510
-
-
Jerrold, I.1
Davis, D.W.2
Stevenson3
Ole, G.P.S.4
Lisa, M.5
Campbell, J.V.6
Freudenstein, D.H.7
Goldman, C.R.8
Hardy, F.A.9
Michelangeli, M.P.10
Simmons, C.D.11
Specht, F.V.S.12
Maria, G.13
-
46
-
-
70149100417
-
A statistical approach for distinguishing hybridization and incomplete lineage sorting
-
Joly S., McLenachan P.A., Lockhart P.J. A statistical approach for distinguishing hybridization and incomplete lineage sorting. Am. Nat. 2009, 174:E54-E70.
-
(2009)
Am. Nat.
, vol.174
, pp. E54-E70
-
-
Joly, S.1
McLenachan, P.A.2
Lockhart, P.J.3
-
47
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones D.T., Taylor W.R., Thornton J.M. The rapid generation of mutation data matrices from protein sequences. CABIOS 1992, 8:275-282.
-
(1992)
CABIOS
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
48
-
-
18944364299
-
A survey of tricolpate eudicot phylogenetic relationships
-
Judd W.S., Olmstead R.G. A survey of tricolpate eudicot phylogenetic relationships. Am. J. Bot. 2004, 91:1627-1644.
-
(2004)
Am. J. Bot.
, vol.91
, pp. 1627-1644
-
-
Judd, W.S.1
Olmstead, R.G.2
-
49
-
-
77954209892
-
The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
-
Junier T., Zdobnov E.M. The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics 2010, 26:1669-1670.
-
(2010)
Bioinformatics
, vol.26
, pp. 1669-1670
-
-
Junier, T.1
Zdobnov, E.M.2
-
50
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K., Kuma K.I., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005, 33:511-518.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.I.2
Toh, H.3
Miyata, T.4
-
51
-
-
84855272508
-
A functional phylogenomic view of the seed plants
-
Lee E.K., Cibrian-Jaramillo A., Kolokotronis S.O., Katari M.S., Stamatakis A., Ott M., Chiu J.C., Little D.P., Stevenson D.W., McCombie W.R., Martienssen R.A., Coruzzi G., DeSalle R. A functional phylogenomic view of the seed plants. PLoS Genet. 2011, 7:e1002411.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002411
-
-
Lee, E.K.1
Cibrian-Jaramillo, A.2
Kolokotronis, S.O.3
Katari, M.S.4
Stamatakis, A.5
Ott, M.6
Chiu, J.C.7
Little, D.P.8
Stevenson, D.W.9
McCombie, W.R.10
Martienssen, R.A.11
Coruzzi, G.12
DeSalle, R.13
-
52
-
-
17044416291
-
Reconstructing patterns of reticulate evolution in plants
-
Linder C.R., Rieseberg L.H. Reconstructing patterns of reticulate evolution in plants. Am. J. Bot. 2004, 9:1700-1708.
-
(2004)
Am. J. Bot.
, vol.9
, pp. 1700-1708
-
-
Linder, C.R.1
Rieseberg, L.H.2
-
53
-
-
70349425459
-
Estimating species phylogenies using coalescence times among sequences
-
Liu L., Yu L., Pearl D.K., Edwards S.V. Estimating species phylogenies using coalescence times among sequences. Syst. Biol. 2009, 58:468-477.
-
(2009)
Syst. Biol.
, vol.58
, pp. 468-477
-
-
Liu, L.1
Yu, L.2
Pearl, D.K.3
Edwards, S.V.4
-
54
-
-
77957686501
-
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
-
Liu L., Yu L., Edwards S.V. A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. BMC Evol. Biol. 2010, 10:302.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 302
-
-
Liu, L.1
Yu, L.2
Edwards, S.V.3
-
55
-
-
0031504952
-
Gene trees in species trees
-
Maddison W.P. Gene trees in species trees. Syst. Biol. 1997, 46:523-536.
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
56
-
-
33644606488
-
Inferring phylogeny despite incomplete lineage sorting
-
Maddison W.P., Knowles L.L. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 2006, 55:21-30.
-
(2006)
Syst. Biol.
, vol.55
, pp. 21-30
-
-
Maddison, W.P.1
Knowles, L.L.2
-
57
-
-
0002448502
-
High transmission of paternal DNA in alfalfa plants demonstrated by restriction fragment polymorphic analysis
-
Masoud S.A., Johnson L.B., Sorensen E.L. High transmission of paternal DNA in alfalfa plants demonstrated by restriction fragment polymorphic analysis. Theor. Appl. Genet. 1990, 79:49-55.
-
(1990)
Theor. Appl. Genet.
, vol.79
, pp. 49-55
-
-
Masoud, S.A.1
Johnson, L.B.2
Sorensen, E.L.3
-
58
-
-
84859530730
-
Ultraconserved elements are novel phylogenetic markers that resolve placental mammal phylogeny when combined with species-tree analysis
-
McCormack J.E., Faircloth B.C., Crawford N.G., Gowaty P.A., Brumfield R.T., Glenn T.C. Ultraconserved elements are novel phylogenetic markers that resolve placental mammal phylogeny when combined with species-tree analysis. Genome Res. 2012, 22:746-754.
-
(2012)
Genome Res.
, vol.22
, pp. 746-754
-
-
McCormack, J.E.1
Faircloth, B.C.2
Crawford, N.G.3
Gowaty, P.A.4
Brumfield, R.T.5
Glenn, T.C.6
-
59
-
-
0030042907
-
The hows and whys of cytoplasmic inheritance in seed plants
-
Mogensen H.L. The hows and whys of cytoplasmic inheritance in seed plants. Am. J. Bot. 1996, 83:383-404.
-
(1996)
Am. J. Bot.
, vol.83
, pp. 383-404
-
-
Mogensen, H.L.1
-
60
-
-
77949494249
-
Phylogenetic analysis of 83 plastid genes further resolved the early diversification of eudicots
-
Moore M.J., Soltis P.S., Bell C.D., Burleigh J.G., Soltis D.E. Phylogenetic analysis of 83 plastid genes further resolved the early diversification of eudicots. Proc. Natl. Acad. Sci. USA 2010, 107:4623-4628.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4623-4628
-
-
Moore, M.J.1
Soltis, P.S.2
Bell, C.D.3
Burleigh, J.G.4
Soltis, D.E.5
-
61
-
-
79955535683
-
Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region
-
Moore M.J., Hassan N., Gitzendanner M.A., Bruenn R.A., Croley M., Vandeventer A., Horn J.W., Dhingra A., Brockington S.F., Latvis M., Ramdial J., Alexandre R., Piedrahita A., Xi Z., Davis C.C., Soltis P.S., Soltis D.E. Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region. Int. J. Plant Sci. 2011, 172:541-558.
-
(2011)
Int. J. Plant Sci.
, vol.172
, pp. 541-558
-
-
Moore, M.J.1
Hassan, N.2
Gitzendanner, M.A.3
Bruenn, R.A.4
Croley, M.5
Vandeventer, A.6
Horn, J.W.7
Dhingra, A.8
Brockington, S.F.9
Latvis, M.10
Ramdial, J.11
Alexandre, R.12
Piedrahita, A.13
Xi, Z.14
Davis, C.C.15
Soltis, P.S.16
Soltis, D.E.17
-
62
-
-
79955373252
-
Newly sequenced nuclear gene (Xdh) for inferring angiosperm phylogeny
-
Morton M.C. Newly sequenced nuclear gene (Xdh) for inferring angiosperm phylogeny. Ann. Mo. Bot. Gard. 2011, 98:63-89.
-
(2011)
Ann. Mo. Bot. Gard.
, vol.98
, pp. 63-89
-
-
Morton, M.C.1
-
63
-
-
12344255112
-
Nonuniform concerted evolution and chloroplast capture: heterogeneity of observed introgression patterns in three molecular data partition phylogenies of Asian Mitella (Saxifragaceae)
-
Okuyama Y., Fujii N., Wakabayashi M., Kawakita A., Ito M., Watanabe M., Murakami N., Kato M. Nonuniform concerted evolution and chloroplast capture: heterogeneity of observed introgression patterns in three molecular data partition phylogenies of Asian Mitella (Saxifragaceae). Mol. Biol. Evol. 2005, 22:285-296.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 285-296
-
-
Okuyama, Y.1
Fujii, N.2
Wakabayashi, M.3
Kawakita, A.4
Ito, M.5
Watanabe, M.6
Murakami, N.7
Kato, M.8
-
64
-
-
84878665325
-
Microevolutionary processes generate phylogenomic discordance at ancient divergences
-
Oliver J.C. Microevolutionary processes generate phylogenomic discordance at ancient divergences. Evolution 2013, 67:1823-1830.
-
(2013)
Evolution
, vol.67
, pp. 1823-1830
-
-
Oliver, J.C.1
-
65
-
-
0033941151
-
The phylogeny of the Asteridae sensu lato based on chloroplast ndhF gene sequences
-
Olmstead R.G., Kim K.J., Jansen R.K., Wagstaff S.J. The phylogeny of the Asteridae sensu lato based on chloroplast ndhF gene sequences. Mol. Phylogenet. Evol. 2000, 16:96-112.
-
(2000)
Mol. Phylogenet. Evol.
, vol.16
, pp. 96-112
-
-
Olmstead, R.G.1
Kim, K.J.2
Jansen, R.K.3
Wagstaff, S.J.4
-
66
-
-
0031949028
-
Trees within trees: phylogeny and historical associations
-
Page R.D.M., Charleston M.A. Trees within trees: phylogeny and historical associations. Trends Ecol. Evol. 1998, 13:356-359.
-
(1998)
Trends Ecol. Evol.
, vol.13
, pp. 356-359
-
-
Page, R.D.M.1
Charleston, M.A.2
-
67
-
-
27744441025
-
Phylogenomics
-
Philippe H., Delsuc F., Brinkmann H., Lartillot N. Phylogenomics. Annu. Rev. Ecol. Evol. Syst. 2005, 36:541-562.
-
(2005)
Annu. Rev. Ecol. Evol. Syst.
, vol.36
, pp. 541-562
-
-
Philippe, H.1
Delsuc, F.2
Brinkmann, H.3
Lartillot, N.4
-
68
-
-
0141721426
-
The root of the mammalian tree inferred from whole mitochondrial genomes
-
Phillips M.J., Penny D. The root of the mammalian tree inferred from whole mitochondrial genomes. Mol. Phylogenet. Evol. 2003, 28:171-185.
-
(2003)
Mol. Phylogenet. Evol.
, vol.28
, pp. 171-185
-
-
Phillips, M.J.1
Penny, D.2
-
69
-
-
3042550872
-
Genome-scale phylogeny and the detection of systematic biases
-
Phillips M.J., Delsuc F., Penny D. Genome-scale phylogeny and the detection of systematic biases. Mol. Biol. Evol. 2004, 21:1455-1458.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1455-1458
-
-
Phillips, M.J.1
Delsuc, F.2
Penny, D.3
-
70
-
-
78649548084
-
Angiosperm phylogeny inferred from sequences of four mitochondrial genes
-
Qiu Y.L., Li L.B., Wang B., Xue J.Y., Hendry T.A., Li R.Q., Brown J.W., Liu Y., Hudson Y.H., Chen Z.D. Angiosperm phylogeny inferred from sequences of four mitochondrial genes. J. Syst. Evol. 2010, 48:391-425.
-
(2010)
J. Syst. Evol.
, vol.48
, pp. 391-425
-
-
Qiu, Y.L.1
Li, L.B.2
Wang, B.3
Xue, J.Y.4
Hendry, T.A.5
Li, R.Q.6
Brown, J.W.7
Liu, Y.8
Hudson, Y.H.9
Chen, Z.D.10
-
71
-
-
84873575162
-
A method of alignment masking for refining the phylogenetic signal of multiple sequence alignments
-
Rajan V. A method of alignment masking for refining the phylogenetic signal of multiple sequence alignments. Mol. Biol. Evol. 2013, 30:689-712.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 689-712
-
-
Rajan, V.1
-
72
-
-
79961144454
-
Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods
-
Regier J.C., Zwick A. Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods. PLoS ONE 2011, 6:e23408.
-
(2011)
PLoS ONE
, vol.6
, pp. e23408
-
-
Regier, J.C.1
Zwick, A.2
-
73
-
-
0001907141
-
Phylogenetic consequences of cytoplasmic gene flow in plants
-
Rieseberg L.H., Soltis D.E. Phylogenetic consequences of cytoplasmic gene flow in plants. Evol. Trends Plants 1991, 5:65-84.
-
(1991)
Evol. Trends Plants
, vol.5
, pp. 65-84
-
-
Rieseberg, L.H.1
Soltis, D.E.2
-
74
-
-
0002443665
-
Introgression and its consequences in plants
-
Oxford University Press, New York, R. Harrison (Ed.)
-
Rieseberg L.H., Wendel J.F. Introgression and its consequences in plants. Hybrid Zones and the Evolutionary Process 1993, 70-109. Oxford University Press, New York. R. Harrison (Ed.).
-
(1993)
Hybrid Zones and the Evolutionary Process
, pp. 70-109
-
-
Rieseberg, L.H.1
Wendel, J.F.2
-
75
-
-
0028992878
-
Interspecific pollen competition as a reproductive barrier between sympatric species of Helianthus (Asteraceae)
-
Rieseberg L.H., Desrochers A.M., Youn S.J. Interspecific pollen competition as a reproductive barrier between sympatric species of Helianthus (Asteraceae). Am. J. Bot. 1995, 82:515-519.
-
(1995)
Am. J. Bot.
, vol.82
, pp. 515-519
-
-
Rieseberg, L.H.1
Desrochers, A.M.2
Youn, S.J.3
-
76
-
-
0030497796
-
Molecular marker incongruence in plant hybrid zones and phylogenetic trees
-
Rieseberg L.H., Whitton J., Linder C.R. Molecular marker incongruence in plant hybrid zones and phylogenetic trees. Acta Bot. Neerl. 1996, 45:243-262.
-
(1996)
Acta Bot. Neerl.
, vol.45
, pp. 243-262
-
-
Rieseberg, L.H.1
Whitton, J.2
Linder, C.R.3
-
77
-
-
0036245438
-
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
-
Rosenberg N.A., Nordberg M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nat. Rev. 2002, 3:380-390.
-
(2002)
Nat. Rev.
, vol.3
, pp. 380-390
-
-
Rosenberg, N.A.1
Nordberg, M.2
-
78
-
-
84897584050
-
From algae to angiosperms - inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
-
Ruhfel B.R., Gitzendanner M.A., Soltis D.E., Soltis P.S., Burleigh J.G. From algae to angiosperms - inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol. Biol. 2014, 14:23.
-
(2014)
BMC Evol. Biol.
, vol.14
, pp. 23
-
-
Ruhfel, B.R.1
Gitzendanner, M.A.2
Soltis, D.E.3
Soltis, P.S.4
Burleigh, J.G.5
-
79
-
-
47649090803
-
Phylogenetic relationships in the monocot order Commelinales, with a focus on Philydraceae
-
Saarela J.M., Prentis P.J., Rai H.S., Graham S.W. Phylogenetic relationships in the monocot order Commelinales, with a focus on Philydraceae. Botany 2008, 86:719-731.
-
(2008)
Botany
, vol.86
, pp. 719-731
-
-
Saarela, J.M.1
Prentis, P.J.2
Rai, H.S.3
Graham, S.W.4
-
80
-
-
76749103900
-
Inference of phylogenetic relationships among the subfamilies of grasses Poaceae: poales using meso-scale sampling of the plastid genome
-
Saarela J.M., Graham S.W. Inference of phylogenetic relationships among the subfamilies of grasses Poaceae: poales using meso-scale sampling of the plastid genome. Botany 2010, 88:65-84.
-
(2010)
Botany
, vol.88
, pp. 65-84
-
-
Saarela, J.M.1
Graham, S.W.2
-
81
-
-
0034350321
-
Testing hybridization hypotheses based on incongruent gene trees
-
Sang T., Zhong Y. Testing hybridization hypotheses based on incongruent gene trees. Syst. Biol. 2000, 49:422-434.
-
(2000)
Syst. Biol.
, vol.49
, pp. 422-434
-
-
Sang, T.1
Zhong, Y.2
-
82
-
-
0000203477
-
Paternal inheritance of plastids in Medicago sativa
-
Schumann C.M., Hancock J.F. Paternal inheritance of plastids in Medicago sativa. Theor. Appl. Genet. 1989, 78:863-866.
-
(1989)
Theor. Appl. Genet.
, vol.78
, pp. 863-866
-
-
Schumann, C.M.1
Hancock, J.F.2
-
83
-
-
0032229324
-
Paternally biased cpDNA inheritance in Turnera ulmifolia (Turneraceae)
-
Shore J.S., Triassi M. Paternally biased cpDNA inheritance in Turnera ulmifolia (Turneraceae). Am. J. Bot. 1998, 85:328-332.
-
(1998)
Am. J. Bot.
, vol.85
, pp. 328-332
-
-
Shore, J.S.1
Triassi, M.2
-
84
-
-
0028257540
-
Inheritance of plastid DNA in the Turnera ulmifolia complex (Turneraceae)
-
Shore J.S., Mcqueen K.L., Little S.H. Inheritance of plastid DNA in the Turnera ulmifolia complex (Turneraceae). Am. J. Bot. 1994, 81:1636-1639.
-
(1994)
Am. J. Bot.
, vol.81
, pp. 1636-1639
-
-
Shore, J.S.1
Mcqueen, K.L.2
Little, S.H.3
-
85
-
-
79251636555
-
The genome of woodland strawberry (Fragaria vesca)
-
Shulaev V., Sargent D.J., Crowhurst R.N., Mockler T.C., Folkerts O., Delcher A.L., Jaiswal P., Mockaitis K., Liston A., Mane S.P., Burns P., Davis T.M., Slovin J.P., Bassil N., Hellens R.P., Evans C., Harkins T., Kodira C., Desany B., Crasta O.R., Jensen R.V., Allan A.C., Michael T.P., Setuba J.C., Celton J., Rees D.J.G., Williams K.P., Holt S.H., Rojas J.J.R., Chatterjee M., Liu B., Silva H., Meisel L., Adato A., Filichkin S.A., Troggio M., Viola R., Ashman T., Wang H., Dharmawardhana P., Elser J., Raja R., Priest H.D., Bryant D.W., Fox S.E., Givan S.A., Wilhelm L.J., Naithani S., Christoffels A., Salama D.Y., Carter J., Girona E.L., Zdepski A., Wang W., Kerstetter R.A., Schwab W., Korban S.S., Davik J., Monfort A., Denoyes-Rothan B., Arus P., Mittler R., Flinn B., Aharoni A., Bennetzen J.L., Salzberg S.L., Dickerman A.W., Velasco R., Borodovsky M., Veilleux R.E., Folta K.M. The genome of woodland strawberry (Fragaria vesca). Nat. Genet. 2010, 43:109-116.
-
(2010)
Nat. Genet.
, vol.43
, pp. 109-116
-
-
Shulaev, V.1
Sargent, D.J.2
Crowhurst, R.N.3
Mockler, T.C.4
Folkerts, O.5
Delcher, A.L.6
Jaiswal, P.7
Mockaitis, K.8
Liston, A.9
Mane, S.P.10
Burns, P.11
Davis, T.M.12
Slovin, J.P.13
Bassil, N.14
Hellens, R.P.15
Evans, C.16
Harkins, T.17
Kodira, C.18
Desany, B.19
Crasta, O.R.20
Jensen, R.V.21
Allan, A.C.22
Michael, T.P.23
Setuba, J.C.24
Celton, J.25
Rees, D.J.G.26
Williams, K.P.27
Holt, S.H.28
Rojas, J.J.R.29
Chatterjee, M.30
Liu, B.31
Silva, H.32
Meisel, L.33
Adato, A.34
Filichkin, S.A.35
Troggio, M.36
Viola, R.37
Ashman, T.38
Wang, H.39
Dharmawardhana, P.40
Elser, J.41
Raja, R.42
Priest, H.D.43
Bryant, D.W.44
Fox, S.E.45
Givan, S.A.46
Wilhelm, L.J.47
Naithani, S.48
Christoffels, A.49
Salama, D.Y.50
Carter, J.51
Girona, E.L.52
Zdepski, A.53
Wang, W.54
Kerstetter, R.A.55
Schwab, W.56
Korban, S.S.57
Davik, J.58
Monfort, A.59
Denoyes-Rothan, B.60
Arus, P.61
Mittler, R.62
Flinn, B.63
Aharoni, A.64
Bennetzen, J.L.65
Salzberg, S.L.66
Dickerman, A.W.67
Velasco, R.68
Borodovsky, M.69
Veilleux, R.E.70
Folta, K.M.71
more..
-
86
-
-
84876575917
-
Insect phylogenomics: exploring the source of incongruence using new transcriptomic data
-
Simon S., Narechania A., DeSalle R., Hadrys H. Insect phylogenomics: exploring the source of incongruence using new transcriptomic data. Genome Biol. Evol. 2012, 4:1295-1309.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 1295-1309
-
-
Simon, S.1
Narechania, A.2
DeSalle, R.3
Hadrys, H.4
-
87
-
-
83555166100
-
Resolving the evolutionary relationships of molluscs with phylogenomic tools
-
Smith S.A., Wilson N.G., Goetz F.E., Feehery C., Andrade S.C.S., Rouse, Giribet G.W.G., Dunn C.W. Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 2011, 480:364-367.
-
(2011)
Nature
, vol.480
, pp. 364-367
-
-
Smith, S.A.1
Wilson, N.G.2
Goetz, F.E.3
Feehery, C.4
Andrade, S.C.S.5
Rouse6
Giribet, G.W.G.7
Dunn, C.W.8
-
88
-
-
0028837216
-
Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae)
-
Soltis D.E., Kuzoff R.K. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution 1995, 49:727-742.
-
(1995)
Evolution
, vol.49
, pp. 727-742
-
-
Soltis, D.E.1
Kuzoff, R.K.2
-
89
-
-
67651052323
-
The role of hybridization in plant speciation
-
Soltis D.E., Soltis P.S. The role of hybridization in plant speciation. Annu. Rev. Plant. Biol. 2009, 60:561-588.
-
(2009)
Annu. Rev. Plant. Biol.
, vol.60
, pp. 561-588
-
-
Soltis, D.E.1
Soltis, P.S.2
-
90
-
-
0033604619
-
Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
-
Soltis D.E., Soltis P.S., Chase M.W. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 1999, 402:402-404.
-
(1999)
Nature
, vol.402
, pp. 402-404
-
-
Soltis, D.E.1
Soltis, P.S.2
Chase, M.W.3
-
91
-
-
0033838109
-
Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
-
Soltis D.E., Soltis P.S., Chase M.W., Mort M.E., Albach D.C., Zanis M., Savolaninen, Hahn V.W.H., Hoot S.B., Fay M.F., Axtell M., Swensen S.M., Prince L.M., Kress W.J., Nixon K.C., Farris J.S. Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Bot. J. Linn. Soc. 2000, 133:381-461.
-
(2000)
Bot. J. Linn. Soc.
, vol.133
, pp. 381-461
-
-
Soltis, D.E.1
Soltis, P.S.2
Chase, M.W.3
Mort, M.E.4
Albach, D.C.5
Zanis, M.6
Savolaninen7
Hahn, V.W.H.8
Hoot, S.B.9
Fay, M.F.10
Axtell, M.11
Swensen, S.M.12
Prince, L.M.13
Kress, W.J.14
Nixon, K.C.15
Farris, J.S.16
-
92
-
-
21044460017
-
-
Sinauer Associates, Sunderland
-
Soltis D.E., Soltis P.S., Endress P.K., Chase M.W. Phylogeny and Evolution of Angiosperms 2005, Sinauer Associates, Sunderland.
-
(2005)
Phylogeny and Evolution of Angiosperms
-
-
Soltis, D.E.1
Soltis, P.S.2
Endress, P.K.3
Chase, M.W.4
-
93
-
-
33847240958
-
A 567-taxon data set for angiosperms: the challenges posed by Bayesian analyses of large data sets
-
Soltis D.E., Gitzendanner M.A., Soltis P.S. A 567-taxon data set for angiosperms: the challenges posed by Bayesian analyses of large data sets. Int. J. Plant Sci. 2007, 168:137-157.
-
(2007)
Int. J. Plant Sci.
, vol.168
, pp. 137-157
-
-
Soltis, D.E.1
Gitzendanner, M.A.2
Soltis, P.S.3
-
94
-
-
65349173526
-
Molecular markers and concepts of plant evolutionary relationships: progress, promise, and future prospects
-
Soltis D.E., Moore M.J., Burleigh J.G., Bell C.D., Soltis P.S. Molecular markers and concepts of plant evolutionary relationships: progress, promise, and future prospects. CRC Crit. Rev. Plant Sci. 2009, 28:1-15.
-
(2009)
CRC Crit. Rev. Plant Sci.
, vol.28
, pp. 1-15
-
-
Soltis, D.E.1
Moore, M.J.2
Burleigh, J.G.3
Bell, C.D.4
Soltis, P.S.5
-
95
-
-
84863337944
-
Angiosperm phylogeny: 17 genes, 640 taxa
-
Soltis D.E., Smith S.A., Cellinese N., Wurdack K.J., Tank D.C., Brockington S.F., Refulio-Rodriguez N.F., Walker J.B., Moore M.J., Carlsward B.S., et al. Angiosperm phylogeny: 17 genes, 640 taxa. Am. J. Bot. 2011, 98:704-730.
-
(2011)
Am. J. Bot.
, vol.98
, pp. 704-730
-
-
Soltis, D.E.1
Smith, S.A.2
Cellinese, N.3
Wurdack, K.J.4
Tank, D.C.5
Brockington, S.F.6
Refulio-Rodriguez, N.F.7
Walker, J.B.8
Moore, M.J.9
Carlsward, B.S.10
-
96
-
-
84866289853
-
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
-
Song S., Liu L., Edwards S.V., Wu S. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proc. Natl. Acad. Sci. USA 2012, 109:14942-14947.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14942-14947
-
-
Song, S.1
Liu, L.2
Edwards, S.V.3
Wu, S.4
-
97
-
-
50249100595
-
A Rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis A., Hoover P., Rougemont J. A Rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57:758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
98
-
-
0030905851
-
Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in the genus Actinidia
-
Testolin R., Cipriani G. Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in the genus Actinidia. Theor. Appl. Genet. 1997, 94:897-903.
-
(1997)
Theor. Appl. Genet.
, vol.94
, pp. 897-903
-
-
Testolin, R.1
Cipriani, G.2
-
100
-
-
62649125150
-
Rosids radiation and the rapid rise of angiosperm-dominated forests
-
Wang H.C., Moore M.J., Soltis P.S., Bell C.D., Brockington S.F., Alexandre R., Davis C.C., Latvis M., Manchester S.R., Soltis D.E. Rosids radiation and the rapid rise of angiosperm-dominated forests. Proc. Natl. Acad. Sci. USA 2009, 106:3853-3858.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 3853-3858
-
-
Wang, H.C.1
Moore, M.J.2
Soltis, P.S.3
Bell, C.D.4
Brockington, S.F.5
Alexandre, R.6
Davis, C.C.7
Latvis, M.8
Manchester, S.R.9
Soltis, D.E.10
-
101
-
-
0000162362
-
Phylogenetic incongruence: window into genome history and molecular evolution
-
Kluwer Academic Publishers, Boston, D.E. Soltis, P.S. Soltis, J.J. Doyle (Eds.)
-
Wendel J.F., Doyle J.J. Phylogenetic incongruence: window into genome history and molecular evolution. Molecular Systematics of Plants II: DNA Sequencing 1998, 256-296. Kluwer Academic Publishers, Boston. D.E. Soltis, P.S. Soltis, J.J. Doyle (Eds.).
-
(1998)
Molecular Systematics of Plants II: DNA Sequencing
, pp. 256-296
-
-
Wendel, J.F.1
Doyle, J.J.2
-
102
-
-
0029366126
-
An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression
-
Wendel J.F., Schnabel A., Seelanan T. An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Mol. Phylogenet. Evol. 1995, 4:298-313.
-
(1995)
Mol. Phylogenet. Evol.
, vol.4
, pp. 298-313
-
-
Wendel, J.F.1
Schnabel, A.2
Seelanan, T.3
-
104
-
-
84919947905
-
Coalescent versus concatenation methods and the placement of Amborella sister to water lilies
-
Xi Z., Liu L., Rest J.S., Davis C.C. Coalescent versus concatenation methods and the placement of Amborella sister to water lilies. Syst. Biol. 2014, 63:919-934.
-
(2014)
Syst. Biol.
, vol.63
, pp. 919-934
-
-
Xi, Z.1
Liu, L.2
Rest, J.S.3
Davis, C.C.4
-
105
-
-
33645786049
-
The inheritance of organelle genes and genomes: patterns and mechanisms
-
Xu J. The inheritance of organelle genes and genomes: patterns and mechanisms. Genome 2005, 48:951-958.
-
(2005)
Genome
, vol.48
, pp. 951-958
-
-
Xu, J.1
-
106
-
-
0033755650
-
Paternal inheritance of chloroplast DNA in interspecific hybrids in the genus Larrea (Zygophyllaceae)
-
Yang T.W., Yang Y.A., Xiong Z. Paternal inheritance of chloroplast DNA in interspecific hybrids in the genus Larrea (Zygophyllaceae). Am. J. Bot. 2000, 87:1452-1458.
-
(2000)
Am. J. Bot.
, vol.87
, pp. 1452-1458
-
-
Yang, T.W.1
Yang, Y.A.2
Xiong, Z.3
-
107
-
-
84876258655
-
Phylogenetic signal variation in the genomes of Medicago (Fabaceae)
-
Yoder J.B., Briskine R., Mudge J., Farmer A., Paape T., Steele K., Weiblen G.D., Bharti A.K., Zhou P., May G.D., Young N.D., Tiffin P. Phylogenetic signal variation in the genomes of Medicago (Fabaceae). Syst. Biol. 2013, 62:424-438.
-
(2013)
Syst. Biol.
, vol.62
, pp. 424-438
-
-
Yoder, J.B.1
Briskine, R.2
Mudge, J.3
Farmer, A.4
Paape, T.5
Steele, K.6
Weiblen, G.D.7
Bharti, A.K.8
Zhou, P.9
May, G.D.10
Young, N.D.11
Tiffin, P.12
-
108
-
-
84919900743
-
Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times
-
4956
-
Zeng L.P., Zhang Q., Sun R.R., Kong H.Z., Zhang N., Ma H. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Nat. Commun. 2014, 5. 4956. 10.1038/ncomms5956.
-
(2014)
Nat. Commun.
, vol.5
-
-
Zeng, L.P.1
Zhang, Q.2
Sun, R.R.3
Kong, H.Z.4
Zhang, N.5
Ma, H.6
-
109
-
-
84864564920
-
Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms
-
Zhang N., Zeng L.P., Shan H.Y., Ma H. Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms. New Phytol. 2012, 195:923-937.
-
(2012)
New Phytol.
, vol.195
, pp. 923-937
-
-
Zhang, N.1
Zeng, L.P.2
Shan, H.Y.3
Ma, H.4
-
110
-
-
84899998080
-
Rapid radiation and dispersal out of the Qinghai-Tibetan Plateau of an alpine plant lineage Rhodiola (Crassulaceae)
-
Zhang J.Q., Meng S.Y., Allen G.A., Wen J., Rao G.Y. Rapid radiation and dispersal out of the Qinghai-Tibetan Plateau of an alpine plant lineage Rhodiola (Crassulaceae). Mol. Phylogenet. Evol. 2014, 77:147-158.
-
(2014)
Mol. Phylogenet. Evol.
, vol.77
, pp. 147-158
-
-
Zhang, J.Q.1
Meng, S.Y.2
Allen, G.A.3
Wen, J.4
Rao, G.Y.5
-
111
-
-
38849141932
-
Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids
-
Zhu X.Y., Chase M.W., Qiu Y.L., Kong H.Z., Dilcher D.L., Li J.H., Chen Z.D. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids. BMC Evol. Biol. 2007, 7:217.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 217
-
-
Zhu, X.Y.1
Chase, M.W.2
Qiu, Y.L.3
Kong, H.Z.4
Dilcher, D.L.5
Li, J.H.6
Chen, Z.D.7
|