Rational and combinatorial approaches toengineering styrene production by Saccharomyces cerevisiae

Microbial Cell Factories

Volumn 13, Issue 1, 2014, Pages

  McKenna, Rebekah ^a   Thompson, Brian ^a   Pugh, Shawn ^a   Nielsen, David R ^a  

^a Arizona State University   (United States)

Author keywords

Aromatics; Phenylalanine; Styrene; Yeast

Indexed keywords

3 DEOXY 7 PHOSPHOHEPTULONATE SYNTHASE; AMMONIA LYASE; CINNAMIC ACID DERIVATIVE; GLUCOSE; PHENYLALANINE; PHENYLALANINE AMMONIA LYASE; STYRENE; CARBOXYLYASE; CINNAMIC ACID; PHENYLACRYLIC ACID DECARBOXYLASE;

ARABIDOPSIS THALIANA; ARTICLE; BIOSYNTHESIS; CATALYSIS; CONTROLLED STUDY; FUNGAL STRAIN; GENETIC CODE; NONHUMAN; PHENOTYPE; PLASMID; PROTEIN EXPRESSION; SACCHAROMYCES CEREVISIAE; UPREGULATION; COMBINATORIAL CHEMISTRY; DRUG EFFECTS; ENZYMOLOGY; GENETIC TRANSCRIPTION; GENETICS; METABOLIC ENGINEERING; METABOLISM; MUTATION; PROCEDURES; TRANSPORT AT THE CELLULAR LEVEL;

BIOLOGICAL TRANSPORT; CARBOXY-LYASES; CINNAMATES; COMBINATORIAL CHEMISTRY TECHNIQUES; GLUCOSE; METABOLIC ENGINEERING; MUTATION; PHENOTYPE; PHENYLALANINE; SACCHAROMYCES CEREVISIAE; STYRENE; TRANSCRIPTION, GENETIC;

EID: 84919787681     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-014-0123-2     Document Type: Article

References (51)

1. Wu C, Koylinski T, Bozik J: Preparation of styrene from ethylbenzene US Patent 4,255,599. 1981.
2. 3 catalysts in the presence of carbon dioxide. Catal Today 2000, 55:173-178.
3. James DH, Castor WM: Styrene. In Ullmann's Encyclopedia of Industrial Chemistry, Volume Volume 34. 7th edition. Edited by Arpe HJ, Biekert E, Davis HT, Gerhartz W. Weinheim: Wiley-VCH; 2011.
4. SRI: Styrene. Rockville: Access Intelligence LLC Inc; 2010.
5. United States Department of Energy, Office of Energy Efficiency and Renewable Energy, National Renewable Energy Laboratory: Steam system opportunity assessment for the pulp and paper, chemical manufacturing, and petroleum refining industries. 2002.
6. Adkins J, Pugh S, McKenna R, Nielsen DR: Engineering microbial chemical factories to produce renewable "biomonomers". Front Microbiol 2012, 3:313.
7. Curran KA, Alper HS: Expanding the chemical palate of cells by combining systems biology and metabolic engineering. Metab Eng 2012, 14:289-297.
8. EB N, Winters P: Perspective on opportunities in industrial biotechnology in renewable chemicals. Biotechnol J 2012, 7:176-185.
9. Lee JW, Kim HU, Choi S, Yi J, Lee SY: Microbial production of building block chemicals and polymers. Curr Opin Biotechnol 2011, 22:758-767.
10. McKenna R, Nielsen DR: Styrene biosynthesis from glucose by engineered E. coli. Metab Eng 2011, 13:544-554.
11. Mukai N, Masaki K, Fujii T, Kawamukai M, Iefuji H: PAD1 and FDC1 are essential for the decarboxylation of phenylacrylic acids in Saccharomyces cerevisiae. J Biosci Bioeng 2010, 109:564-569.
12. Claypool J, Raman DR, Jarboe LJ, Nielsen DR: Technoeconomic evaluation of bio-based styrene production by engineered Escherichia coli. J Ind Microbiol Biotechnol 2014 DOI:10.1007/s10295-014-1469-5.
13. Lo TM, Teo WS, Ling H, Chen BB, Kang A, Chang MW: Microbial engineering strategies to improve cell viability for biochemical production. Biotechnol Adv 2013, 31:903-914.
14. Demain AL, Vaishnav P: Production of recombinant proteins by microbes and higher organisms. Biotechnol Adv 2009, 27:297-306.
15. Sudbery PE: The expression of recombinant proteins in yeasts. Curr Opin Biotechnol 1996, 7:517-524.
16. Curran KA, Leavitt JM, Karim AS, Alper HS: Metabolic engineering of muconic acid production in Saccharomyces cerevisiae. Metab Eng 2013, 15:55-66.
17. Nevoigt E: Progress in metabolic engineering of Saccharomyces cerevisiae. Microbiol Molec Biol Rev 2008, 72:379-412.
18. Ostergaard S, Olsson L, Nielsen J: Metabolic engineering of Saccharomyces cerevisiae. Microbiol Molec Biol Rev 2000, 64:34-50.
19. Alberti S, Gitler AD, Lindquist S: A suite of Gateway® cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae. Yeast 2007, 24:913-919.
20. Hansen EH, Moller BL, Kock GR, Bunner CM, Kristensen C, Jensen OR, Okkels FT, Olsen CE, Motawia MS, Hansen J: De novo biosynthesis of vanillin in fission yeast (Schizosaccharomyces pombe) and baker's yeast (Saccharomyces cerevisiae). Appl Environ Microbiol 2009, 75:2765-2774.
21. Jiang H, Wood KV, Morgan JA: Metabolic engineering of the phenylpropanoid pathway in Saccharomyces cerevisiae. Appl Environ Microbiol 2005, 71:2962-2969.
22. Stark D, Munch T, Sonnleitner B, Marison IW, von Stockar U: Extractive bioconversion of 2-phenylethanol from L-phenylalanine by Saccharomyces cerevisiae. Biotechnol Prog 2002, 18:514-523.
23. Koopman F, Beekwilder J, Crimi B, van Houwelingen A, Hall RD, Bosch D, van Maris AJA, Pronk JT, Daran JM: De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae. Microb Cell Fact 2012, 11:155-169.
24. Luttik MAH, Vuralhan Z, Suir E, Braus GH, Pronk JT, Daran JM: Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: Quantification of metabolic impact. Metab Eng 2008, 10:141-153.
25. Nijkamp K, van Luijk N, de Bont JA, Wery J: The solvent-tolerant Pseudomonas putida S12 as host for the production of cinnamic acid from glucose. Appl Microbiol Biotechnol 2005, 69:170-177.
26. Nijkamp K, Westerhof RG, Ballerstedt H, de Bont JA, Wery J: Optimization of the solvent-tolerant Pseudomonas putida S12 as host for the production of p-coumarate from glucose. Appl Microbiol Biotechnol 2007, 74:617-624.
27. Verhoef S, Wierckx N, Westerhof RG, de Winde JH, Ruijssenaars HJ: Bioproduction of p-hydroxystyrene from glucose by the solvent-tolerant bacterium Pseudomonas putida S12 in a two-phase water-decanol fermentation. Appl Environ Microbiol 2009, 75:931-936.
28. Wierckx NJ, Ballerstedt H, de Bont JA, Wery J: Engineering of solvent-tolerant Pseudomonas putida S12 for bioproduction of phenol from glucose. Appl Environ Microbiol 2005, 71:8221-8227.
29. Drake RH: The biochemistry of mutagenesis. Annu Rev Microbiol 1976, 45:11-37.
30. Wloch DM, Szafraniec K, Borts RH, Korona R: Direct estimate of the mutation rate and the distribution of fitness effects in the yeast Saccharomyces cerevisiae. Genetics 2001, 159:441-452.
31. Vuralhan Z, Morais MA, Tai SL, Piper MD, Pronk JT: Identification and characterization of phenylpyruvate decarboxylase genes in Saccharomyces cerevisiae. Appl Environ Microbiol 2003, 69:4534-4541.
32. Hazelwood LA, Daran JM, van Maris AJ, Pronk JT, Dickinson JR: The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism. Appl Environ Microbiol 2008, 74:2259-2266.
33. Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD, Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tisse C, Zhang P, Karp PD: MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res 2006, 34:D511-D516.
34. Fukuda K, Watanabe M, Asano K, Ouchi K, Takasawa S: A mutated ARO4 gene for feedback-resistant DAHP synthase which causes both o-fluoro-dl-phenylalamine resistance and β-phenethyl-alcohol overproduction in Saccharomyces cerevisiae. Curr Genet 1991, 20:453-456.
35. Teshiba S, Furter R, Niederberger P, Braus G, Paravicini G, Hütter R: Cloning of the ARO3 gene of Saccharomyces cerevisiae and its regulation. Molec Gen Genet 1986, 205:353-357.
36. Schmidheini T, Sperisen P, Paravicini G, Hütter R, Braus G: A single point mutation results in a constitutively activated and feedback-resistant chorismate mutase of Saccharomyces cerevisiae. J Bacteriol 1989, 171:1245-1253.
37. Kradolfer P, Zeyer J, Miozzari G, Huetter R: Dominant regulatory mutants in chorismate mutase of Saccharomyces cerevisiae. FEMS Microbiol Lett 1977, 2:211-216.
38. Weber C, Bruckner C, Weinreb S, Lehr C, Essl C, Boles E: Biosynthesis of cis, cis-muconic acid and its aromatic precursors, catechol and protocatechuic acid, from renewable feedstocks by Saccharomyces cerevisiae. Appl Environ Microbiol 2012, 78:8421-8430.
39. Dickinson JR, Salgado LE, Hewlins MJ: The catabolism of amino acids to long chain and complex alcohols in Saccharomyces cerevisiae. J Biol Chem 2003, 278:8028-8034.
40. Iraqui I, Vissers S, Cartiaux M, Urrestarazu A: Characterisation of Saccharomyces cerevisiae ARO8 and ARO9 genes encoding aromatic aminotransferases I and II reveals a new aminotransferase subfamily. Molec Gen Genet 1998, 257:238-248.
41. Hinnebusch AG: Translational regulation of gcn4 and the general amino Acid control of yeast. Annu Rev Microbiol 2005, 59:407-450.
42. Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR: Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res 2012, 40:D700-D705.
43. Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD: The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 2008, 36:D623-D631.
44. McKenna R, Moya L, McDaniel M, Nielsen DR: Comparing in situ removal strategies for improving styrene bioproduction. Bioproc Biosys Eng 2014. DOI:10.1007/s00449-014-1255-9.
45. Vannelli T, Qi WW, Sweigard J, Gatenby AA, Sariaslani FS: Production of p-hydroxycinnamic acid from glucose in Saccharomyces cerevisiae and Escherichia coli by expression of heterologous genes from plants and fungi. Metab Eng 2007, 9:142-151.
46. Kromer JO, Nunez-Bernal D, Averesch NJH, Hampe J, Varela J, Varela C: Production of aromatics in Saccharomyces cerevisiae - a feasibility study. J Biotechnol 2013, 163:184-193.
47. Winston F: EMS and UV mutagenesis in yeast. In Current Protocols in Molecular Biology: John Wiley & Sons, Inc.; 2001.
48. Martorell P, Querol A, Fernández-Espinar MT: Rapid identification and enumeration of Saccharomyces cerevisiae cells in wine by real-time PCR. Appl Environ Microbiol 2005, 71:6823-6830.
49. Livak KJ, Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408.
50. Murray MJ, Gallaway WS: Steric inhibition of resonance in 1-methyl-2-isopropenylbenzene. J Am Chem Soc 1948, 70:3867-3868.
51. Gietz RD, Woods RA: Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 2002, 350:87-96.