-
1
-
-
0023410628
-
Mixed fungal populations and lignocellulosic tissue degradation in the bovine rumen
-
Akin D, Rigsby L, (1987) Mixed fungal populations and lignocellulosic tissue degradation in the bovine rumen. Applied and Environmental Microbiology, 53, 1987-1995.
-
(1987)
Applied and Environmental Microbiology
, vol.53
, pp. 1987-1995
-
-
Akin, D.1
Rigsby, L.2
-
2
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen M, Hugenholtz P, Skarshewski A, et al,. (2013) Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature Biotechnology, 31, 533-538.
-
(2013)
Nature Biotechnology
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, et al,. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25, 3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
-
4
-
-
0001925363
-
Sulfonate S: A major form of forest soil organic sulfur
-
Autry A, Fitzgerald J, (1990) Sulfonate S: a major form of forest soil organic sulfur. Biology and Fertility of Soils, 10, 50-56.
-
(1990)
Biology and Fertility of Soils
, vol.10
, pp. 50-56
-
-
Autry, A.1
Fitzgerald, J.2
-
5
-
-
0031688318
-
Status of global reservoirs: The position in the late twentieth century
-
Avakyan A, Iakovleva V, (1998) Status of global reservoirs: the position in the late twentieth century. Lakes & Reservoirs: Research & Management, 3, 45-52.
-
(1998)
Lakes & Reservoirs: Research & Management
, vol.3
, pp. 45-52
-
-
Avakyan, A.1
Iakovleva, V.2
-
6
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, et al,. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics, 9, 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
-
7
-
-
77149125919
-
Efficient aquatic bacterial metabolism of dissolved low-molecular-weight compounds from terrestrial sources
-
Berggren M, Laudon H, Haei M, Ström L, Jansson M, (2010) Efficient aquatic bacterial metabolism of dissolved low-molecular-weight compounds from terrestrial sources. The ISME Journal, 4, 408-416.
-
(2010)
The ISME Journal
, vol.4
, pp. 408-416
-
-
Berggren, M.1
Laudon, H.2
Haei, M.3
Ström, L.4
Jansson, M.5
-
8
-
-
33747887423
-
European Union bans atrazine, while the United States negotiates continued use
-
Bethsass J, Colangelo A, (2006) European Union bans atrazine, while the United States negotiates continued use. International Journal of Occupational and Environmental Health, 12, 260-267.
-
(2006)
International Journal of Occupational and Environmental Health
, vol.12
, pp. 260-267
-
-
Bethsass, J.1
Colangelo, A.2
-
9
-
-
0042100516
-
Lignin biosynthesis
-
Boerjan W, Ralph J, Baucher M, (2003) Lignin biosynthesis. Annual Review of Plant Biology, 54, 519-546.
-
(2003)
Annual Review of Plant Biology
, vol.54
, pp. 519-546
-
-
Boerjan, W.1
Ralph, J.2
Baucher, M.3
-
10
-
-
0035397372
-
Using light scatter signal to estimate bacterial biovolume by flow cytometry
-
Bouvier T, Troussellier M, Anzil A, Courties C, Servais P, (2001) Using light scatter signal to estimate bacterial biovolume by flow cytometry. Cytometry, 44, 188-194.
-
(2001)
Cytometry
, vol.44
, pp. 188-194
-
-
Bouvier, T.1
Troussellier, M.2
Anzil, A.3
Courties, C.4
Servais, P.5
-
11
-
-
0034607410
-
Herbicides and herbicide degradates in shallow groundwater and the Cedar River near a municipal well field, Cedar Rapids, Iowa
-
Boyd R, (2000) Herbicides and herbicide degradates in shallow groundwater and the Cedar River near a municipal well field, Cedar Rapids, Iowa. Science of the Total Environment, 248, 241-253.
-
(2000)
Science of the Total Environment
, vol.248
, pp. 241-253
-
-
Boyd, R.1
-
13
-
-
84894028767
-
Symbiotic digestion of lignocellulose in termite guts
-
Brune A, (2014) Symbiotic digestion of lignocellulose in termite guts. Nature Reviews Microbiology, 12, 168-180.
-
(2014)
Nature Reviews Microbiology
, vol.12
, pp. 168-180
-
-
Brune, A.1
-
14
-
-
0033754309
-
Key aromatic-ring-cleaving enzyme, protocatechuate 3, 4-dioxygenase, in the ecologically important marineRoseobacter lineage
-
Buchan A, Collier LS, Neidle EL, Moran MA, (2000) Key aromatic-ring-cleaving enzyme, protocatechuate 3, 4-dioxygenase, in the ecologically important marineRoseobacter lineage. Applied and Environmental Microbiology, 66, 4662-4672.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 4662-4672
-
-
Buchan, A.1
Collier, L.S.2
Neidle, E.L.3
Moran, M.A.4
-
15
-
-
79955761627
-
The emerging role for bacteria in lignin degradation and bio-product formation
-
Bugg TDH, Ahmad M, Hardiman EM, Singh R, (2011) The emerging role for bacteria in lignin degradation and bio-product formation. Current Opinion in Biotechnology, 22, 394-400.
-
(2011)
Current Opinion in Biotechnology
, vol.22
, pp. 394-400
-
-
Bugg, T.D.H.1
Ahmad, M.2
Hardiman, E.M.3
Singh, R.4
-
16
-
-
0025458892
-
Atrazine and other s-triazine herbicides in lakes and in rain in Switzerland
-
Buser H-R, (1990) Atrazine and other s-triazine herbicides in lakes and in rain in Switzerland. Environmental Science & Technology, 24, 1049-1058.
-
(1990)
Environmental Science & Technology
, vol.24
, pp. 1049-1058
-
-
Buser, H.-R.1
-
17
-
-
84919757777
-
-
Monograph of the Polish Institute of Meteorology and Water Management, National Research Institute, Warszawa, Poland
-
Camacho A, Battle M, Correcher E, et al,. (2013) New technologies for Water Quality Monitoring in Dams: Limnological Contrast and Calibration in Mediterranean Reservoirs. Monograph of the Polish Institute of Meteorology and Water Management, National Research Institute, Warszawa, Poland.
-
(2013)
New Technologies for Water Quality Monitoring in Dams: Limnological Contrast and Calibration in Mediterranean Reservoirs
-
-
Camacho, A.1
Battle, M.2
Correcher, E.3
-
18
-
-
67650757433
-
TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
-
Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T, (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25, 1972-1973.
-
(2009)
Bioinformatics
, vol.25
, pp. 1972-1973
-
-
Capella-Gutiérrez, S.1
Silla-Martínez, J.M.2
Gabaldón, T.3
-
19
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, et al,. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Research, 37, D141-D145.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
-
20
-
-
7344234302
-
Summer phytoplankton assemblages across trophic gradients in hard-water reservoirs
-
Dasi MJ, Miracle MA, Camacho A, Soria JM, Vicente E, (1998) Summer phytoplankton assemblages across trophic gradients in hard-water reservoirs. Hydrobiologia, 369/370, 27-43.
-
(1998)
Hydrobiologia
, vol.369-370
, pp. 27-43
-
-
Dasi, M.J.1
Miracle, M.A.2
Camacho, A.3
Soria, J.M.4
Vicente, E.5
-
21
-
-
7344234302
-
Summer phytoplankton assemblages across trophic gradients in hard-water reservoirs
-
Springer, Belgium
-
Dasí M, Miracle M, Camacho A, Soria J, Vicente E, (1998) Summer phytoplankton assemblages across trophic gradients in hard-water reservoirs. In: Phytoplankton and Trophic Gradients, pp. 27-43. Springer, Belgium.
-
(1998)
Phytoplankton and Trophic Gradients
, pp. 27-43
-
-
Dasí, M.1
Miracle, M.2
Camacho, A.3
Soria, J.4
Vicente, E.5
-
23
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
24
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC, (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
25
-
-
84906944762
-
Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics
-
Eiler A, Zaremba-Niedzwiedzka K, Martínez-García M, et al,. (2013) Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. Environmental Microbiology, 16, 2682-2698.
-
(2013)
Environmental Microbiology
, vol.16
, pp. 2682-2698
-
-
Eiler, A.1
Zaremba-Niedzwiedzka, K.2
Martínez-García, M.3
-
26
-
-
0017490201
-
Chromatographic investigation of inositol phosphate esters in lake waters
-
Eisenreich SJ, Armstrong DE, (1977) Chromatographic investigation of inositol phosphate esters in lake waters. Environmental Science & Technology, 11, 497-501.
-
(1977)
Environmental Science & Technology
, vol.11
, pp. 497-501
-
-
Eisenreich, S.J.1
Armstrong, D.E.2
-
27
-
-
0035209925
-
Alkanesulfonate degradation by novel strains of Achromobacter xylosoxidans, Tsukamurella wratislaviensis and Rhodococcus sp., and evidence for an ethanesulfonate monooxygenase in A. Xylosoxidans strain AE4
-
Erdlenbruch BN, Kelly DP, Murrell CJ, (2001) Alkanesulfonate degradation by novel strains of Achromobacter xylosoxidans, Tsukamurella wratislaviensis and Rhodococcus sp., and evidence for an ethanesulfonate monooxygenase in A. xylosoxidans strain AE4. Archives of Microbiology, 176, 406-414.
-
(2001)
Archives of Microbiology
, vol.176
, pp. 406-414
-
-
Erdlenbruch, B.N.1
Kelly, D.P.2
Murrell, C.J.3
-
28
-
-
34247261436
-
Changes in cyanobacterial dominance following the invasion of the zebra musselDreissena polymorpha: Long-term results from the Hudson River estuary
-
Fernald SH, Caraco NF, Cole JJ, (2007) Changes in cyanobacterial dominance following the invasion of the zebra musselDreissena polymorpha: long-term results from the Hudson River estuary. Estuaries and Coasts, 30, 163-170.
-
(2007)
Estuaries and Coasts
, vol.30
, pp. 163-170
-
-
Fernald, S.H.1
Caraco, N.F.2
Cole, J.J.3
-
29
-
-
0027508335
-
Cloning, sequencing, and expression of the Pseudomonas putida protocatechuate 3, 4-dioxygenase genes
-
Frazee RW, Livingston D, LaPorte D, Lipscomb J, (1993) Cloning, sequencing, and expression of the Pseudomonas putida protocatechuate 3, 4-dioxygenase genes. Journal of Bacteriology, 175, 6194-6202.
-
(1993)
Journal of Bacteriology
, vol.175
, pp. 6194-6202
-
-
Frazee, R.W.1
Livingston, D.2
Laporte, D.3
Lipscomb, J.4
-
30
-
-
84881043915
-
Complete genome sequence of Ilumatobacter coccineum YM16-304 T
-
Fujinami S, Takarada H, Kasai H, et al,. (2013) Complete genome sequence of Ilumatobacter coccineum YM16-304 T. Standards in Genomic Sciences, 8, 3.
-
(2013)
Standards in Genomic Sciences
, vol.8
, pp. 3
-
-
Fujinami, S.1
Takarada, H.2
Kasai, H.3
-
31
-
-
84871359129
-
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
-
Garcia SL, McMahon KD, Martinez-Garcia M, et al,. (2012) Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. The ISME Journal, 7, 137-147.
-
(2012)
The ISME Journal
, vol.7
, pp. 137-147
-
-
Garcia, S.L.1
McMahon, K.D.2
Martinez-Garcia, M.3
-
32
-
-
84892659989
-
Successful enrichment of the ubiquitous freshwater acI Actinobacteria
-
Garcia SL, McMahon KD, Grossart HP, Warnecke F, (2013) Successful enrichment of the ubiquitous freshwater acI Actinobacteria. Environmental Microbiology Reports, 6, 21-27.
-
(2013)
Environmental Microbiology Reports
, vol.6
, pp. 21-27
-
-
Garcia, S.L.1
McMahon, K.D.2
Grossart, H.P.3
Warnecke, F.4
-
33
-
-
77956095592
-
Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
-
Ghai R, Martin-Cuadrado A-B, Molto AG, et al,. (2010) Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing. The ISME Journal, 4, 1154-1166.
-
(2010)
The ISME Journal
, vol.4
, pp. 1154-1166
-
-
Ghai, R.1
Martin-Cuadrado, A.-B.2
Molto, A.G.3
-
34
-
-
84883703281
-
New abundant microbial groups in aquatic hypersaline environments
-
Ghai R, Pasic L, Fernandez AB, et al,. (2011a) New abundant microbial groups in aquatic hypersaline environments. Scientific Reports, 1, 135.
-
(2011)
Scientific Reports
, vol.1
, pp. 135
-
-
Ghai, R.1
Pasic, L.2
Fernandez, A.B.3
-
35
-
-
80051840169
-
Metagenomics of the water column in the pristine upper course of the Amazon river
-
Ghai R, Rodriguez-Valera F, McMahon KD, et al,. (2011b) Metagenomics of the water column in the pristine upper course of the Amazon river. PLoS One, 6, e23785.
-
(2011)
PLoS One
, vol.6
, pp. e23785
-
-
Ghai, R.1
Rodriguez-Valera, F.2
McMahon, K.D.3
-
36
-
-
84863809408
-
Metagenomes of Mediterranean coastal lagoons
-
Ghai R, Hernandez CM, Picazo A, et al,. (2012a) Metagenomes of Mediterranean coastal lagoons. Scientific Reports, 2, 490.
-
(2012)
Scientific Reports
, vol.2
, pp. 490
-
-
Ghai, R.1
Hernandez, C.M.2
Picazo, A.3
-
37
-
-
84856742115
-
Breaking a paradigm: Cosmopolitan and abundant freshwater actinobacteria are low GC
-
Ghai R, McMahon KD, Rodriguez-Valera F, (2012b) Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC. Environmental Microbiology Reports, 4, 29-35.
-
(2012)
Environmental Microbiology Reports
, vol.4
, pp. 29-35
-
-
Ghai, R.1
McMahon, K.D.2
Rodriguez-Valera, F.3
-
38
-
-
84883136008
-
Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria
-
Ghai R, Mizuno CM, Picazo A, Camacho A, Rodriguez-Valera F, (2013) Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria. Scientific Reports, 3, 2471.
-
(2013)
Scientific Reports
, vol.3
, pp. 2471
-
-
Ghai, R.1
Mizuno, C.M.2
Picazo, A.3
Camacho, A.4
Rodriguez-Valera, F.5
-
39
-
-
84926228825
-
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
-
Ghylin TW, Garcia SL, Moya F, et al,. (2014) Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The ISME Journal, doi: 10.1038/ismej.2014.135.
-
(2014)
The ISME Journal
-
-
Ghylin, T.W.1
Garcia, S.L.2
Moya, F.3
-
40
-
-
0033754255
-
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
-
Glockner FO, Zaichikov E, Belkova N, et al,. (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Applied and Environment Microbiology, 66, 5053-5065.
-
(2000)
Applied and Environment Microbiology
, vol.66
, pp. 5053-5065
-
-
Glockner, F.O.1
Zaichikov, E.2
Belkova, N.3
-
41
-
-
0003505334
-
-
18. American Public Health Association, Washington, District of Columbia
-
Greenberg A, Clesceri L, Eaton A, (1992) Standard Methods for the Examination of Water and Wastewater, 18. American Public Health Association, Washington, District of Columbia.
-
(1992)
Standard Methods for the Examination of Water and Wastewater
-
-
Greenberg, A.1
Clesceri, L.2
Eaton, A.3
-
42
-
-
84881108901
-
Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria
-
Gushchin I, Chervakov P, Kuzmichev P, et al,. (2013) Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria. Proceedings of the National Academy of Sciences, 110, 12631-12636.
-
(2013)
Proceedings of the National Academy of Sciences
, vol.110
, pp. 12631-12636
-
-
Gushchin, I.1
Chervakov, P.2
Kuzmichev, P.3
-
43
-
-
0035175673
-
TIGRFAMs: A protein family resource for the functional identification of proteins
-
Haft DH, Loftus BJ, Richardson DL, et al,. (2001) TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Research, 29, 41-43.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 41-43
-
-
Haft, D.H.1
Loftus, B.J.2
Richardson, D.L.3
-
44
-
-
0141816854
-
Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones
-
Hahn MW, (2003) Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Applied and Environment Microbiology, 69, 5248-5254.
-
(2003)
Applied and Environment Microbiology
, vol.69
, pp. 5248-5254
-
-
Hahn, M.W.1
-
45
-
-
60549112907
-
Description of seven candidate species affiliated with the phylum Actinobacteria, representing planktonic freshwater bacteria
-
Hahn MW, (2009) Description of seven candidate species affiliated with the phylum Actinobacteria, representing planktonic freshwater bacteria. International Journal of Systematic and Evolutionary Microbiology, 59, 112-117.
-
(2009)
International Journal of Systematic and Evolutionary Microbiology
, vol.59
, pp. 112-117
-
-
Hahn, M.W.1
-
46
-
-
0345269205
-
Isolation of novel ultramicrobacteria classified as actinobacteria from five freshwater habitats in Europe and Asia
-
Hahn MW, Lunsdorf H, Wu Q, et al,. (2003) Isolation of novel ultramicrobacteria classified as actinobacteria from five freshwater habitats in Europe and Asia. Applied and Environment Microbiology, 69, 1442-1451.
-
(2003)
Applied and Environment Microbiology
, vol.69
, pp. 1442-1451
-
-
Hahn, M.W.1
Lunsdorf, H.2
Wu, Q.3
-
47
-
-
2342608928
-
The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria
-
Hahn MW, Stadler P, Wu QL, Pöckl M, (2004) The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria. Journal of Microbiological Methods, 57, 379-390.
-
(2004)
Journal of Microbiological Methods
, vol.57
, pp. 379-390
-
-
Hahn, M.W.1
Stadler, P.2
Wu, Q.L.3
Pöckl, M.4
-
48
-
-
84907048176
-
Rhodoluna lacicola gen. Nov., sp. Nov., a planktonic freshwater bacterium with stream-lined genome
-
Hahn M, Schmidt J, Taipale SJ, Doolittle WF, Koll U, (2014) Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome. International Journal of Systematic and Evolutionary Microbiology, 64, 3254-3263.
-
(2014)
International Journal of Systematic and Evolutionary Microbiology
, vol.64
, pp. 3254-3263
-
-
Hahn, M.1
Schmidt, J.2
Taipale, S.J.3
Doolittle, W.F.4
Koll, U.5
-
49
-
-
0035498333
-
Oxidative mechanisms involved in lignin degradation by white-rot fungi
-
ten Have R, Teunissen PJ, (2001) Oxidative mechanisms involved in lignin degradation by white-rot fungi. Chemical Reviews, 101, 3397-3414.
-
(2001)
Chemical Reviews
, vol.101
, pp. 3397-3414
-
-
Ten Have, R.1
Teunissen, P.J.2
-
50
-
-
65549160988
-
Identification of ribosomal RNA genes in metagenomic fragments
-
Huang Y, Gilna P, Li W, (2009) Identification of ribosomal RNA genes in metagenomic fragments. Bioinformatics, 25, 1338-1340.
-
(2009)
Bioinformatics
, vol.25
, pp. 1338-1340
-
-
Huang, Y.1
Gilna, P.2
Li, W.3
-
51
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identification
-
Hyatt D, Chen GL, LoCascio PF, et al,. (2010) Prodigal: Prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics, 11, 119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
-
52
-
-
67649492601
-
'Candidatus Planktophila limnetica', an actinobacterium representing one of the most numerically important taxa in freshwater bacterioplankton
-
Jezbera J, Sharma AK, Brandt U, Doolittle WF, Hahn MW, (2009) 'Candidatus Planktophila limnetica', an actinobacterium representing one of the most numerically important taxa in freshwater bacterioplankton. International Journal of Systematic and Evolutionary Microbiology, 59, 2864-2869.
-
(2009)
International Journal of Systematic and Evolutionary Microbiology
, vol.59
, pp. 2864-2869
-
-
Jezbera, J.1
Sharma, A.K.2
Brandt, U.3
Doolittle, W.F.4
Hahn, M.W.5
-
53
-
-
38949204866
-
Summer heatwaves promote blooms of harmful cyanobacteria
-
Johnk KD, Huisman JEF, Sharples J, et al,. (2008) Summer heatwaves promote blooms of harmful cyanobacteria. Global Change Biology, 14, 495-512.
-
(2008)
Global Change Biology
, vol.14
, pp. 495-512
-
-
Johnk, K.D.1
Huisman, J.E.F.2
Sharples, J.3
-
54
-
-
84863997021
-
Genome sequence of "candidatus Aquiluna" sp. Strain IMCC13023, a marine member of the actinobacteria isolated from an arctic fjord
-
Kang I, Lee K, Yang S-J, et al,. (2012) Genome sequence of "Candidatus Aquiluna" sp. strain IMCC13023, a marine member of the actinobacteria isolated from an arctic fjord. Journal of Bacteriology, 194, 3550-3551.
-
(2012)
Journal of Bacteriology
, vol.194
, pp. 3550-3551
-
-
Kang, I.1
Lee, K.2
Yang, S.-J.3
-
55
-
-
0242712756
-
The influence of weather conditions (temperature and wind) on cyanobacterial bloom development in the Gulf of Finland (Baltic Sea)
-
Kanoshina I, Lips U, Leppänen J-M, (2003) The influence of weather conditions (temperature and wind) on cyanobacterial bloom development in the Gulf of Finland (Baltic Sea). Harmful Algae, 2, 29-41.
-
(2003)
Harmful Algae
, vol.2
, pp. 29-41
-
-
Kanoshina, I.1
Lips, U.2
Leppänen, J.-M.3
-
56
-
-
84867698819
-
Deciphering the genome of polyphosphate accumulating actinobacterium Microlunatus phosphovorus
-
Kawakoshi A, Nakazawa H, Fukada J, et al,. (2012) Deciphering the genome of polyphosphate accumulating actinobacterium Microlunatus phosphovorus. DNA Research, 19, 383-394.
-
(2012)
DNA Research
, vol.19
, pp. 383-394
-
-
Kawakoshi, A.1
Nakazawa, H.2
Fukada, J.3
-
57
-
-
0032743912
-
Microbial metabolism of methanesulfonic acid
-
Kelly DP, Murrell JC, (1999) Microbial metabolism of methanesulfonic acid. Archives of Microbiology, 172, 341-348.
-
(1999)
Archives of Microbiology
, vol.172
, pp. 341-348
-
-
Kelly, D.P.1
Murrell, J.C.2
-
58
-
-
33846476676
-
Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
-
King GM, Weber CF, (2007) Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nature Reviews Microbiology, 5, 107-118.
-
(2007)
Nature Reviews Microbiology
, vol.5
, pp. 107-118
-
-
King, G.M.1
Weber, C.F.2
-
59
-
-
29244447181
-
Kalign-an accurate and fast multiple sequence alignment algorithm
-
Lassmann T, Sonnhammer EL, (2005) Kalign-an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics, 6, 298.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 298
-
-
Lassmann, T.1
Sonnhammer, E.L.2
-
60
-
-
70349458100
-
The genomic basis of trophic strategy in marine bacteria
-
Lauro FM, McDougald D, Thomas T, et al,. (2009) The genomic basis of trophic strategy in marine bacteria. Proceedings of the National Academy of Sciences, 106, 15527-15533.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 15527-15533
-
-
Lauro, F.M.1
McDougald, D.2
Thomas, T.3
-
61
-
-
46749110034
-
FactoMineR: An R package for multivariate analysis
-
Lê S, Josse J, Husson F, (2008) FactoMineR: an R package for multivariate analysis. Journal of Statistical Software, 25, 1-18.
-
(2008)
Journal of Statistical Software
, vol.25
, pp. 1-18
-
-
Lê, S.1
Josse, J.2
Husson, F.3
-
63
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research, 25, 0955-0964.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 0955-0964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
64
-
-
0002028306
-
Enumeration of phototrophic picoplankton by autofluorescence microscopy
-
Lewis Publishers, Boca Raton, Florida
-
MacIsaac E, Stockner JG, (1993) Enumeration of phototrophic picoplankton by autofluorescence microscopy. In: Handbook of Methods in Aquatic Microbial Ecology, pp. 187-197. Lewis Publishers, Boca Raton, Florida.
-
(1993)
Handbook of Methods in Aquatic Microbial Ecology
, pp. 187-197
-
-
MacIsaac, E.1
Stockner, J.G.2
-
65
-
-
0030620443
-
Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR Green i
-
Marie D, Partensky F, Jacquet S, Vaulot D, (1997) Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR Green I. Applied and Environmental Microbiology, 63, 186-193.
-
(1997)
Applied and Environmental Microbiology
, vol.63
, pp. 186-193
-
-
Marie, D.1
Partensky, F.2
Jacquet, S.3
Vaulot, D.4
-
66
-
-
72949103084
-
CO dehydrogenase genes found in metagenomic fosmid clones from the deep Mediterranean Sea
-
Martin-Cuadrado A-B, Ghai R, Gonzaga A, Rodriguez-Valera F, (2009) CO dehydrogenase genes found in metagenomic fosmid clones from the deep Mediterranean Sea. Applied and Environmental Microbiology, 75, 7436-7444.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7436-7444
-
-
Martin-Cuadrado, A.-B.1
Ghai, R.2
Gonzaga, A.3
Rodriguez-Valera, F.4
-
67
-
-
84862179493
-
New insights into Escherichia coli metabolism: Carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol
-
Martínez-Gómez K, Flores N, Castañeda HM, et al,. (2012) New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol. Microbial Cell Factories, 11, 46.
-
(2012)
Microbial Cell Factories
, vol.11
, pp. 46
-
-
Martínez-Gómez, K.1
Flores, N.2
Castañeda, H.M.3
-
68
-
-
67749133866
-
Ilumatobacter fluminis gen. Nov., sp. Nov., a novel actinobacterium isolated from the sediment of an estuary
-
Matsumoto A, Kasai H, Matsuo Y, et al,. (2009) Ilumatobacter fluminis gen. nov., sp. nov., a novel actinobacterium isolated from the sediment of an estuary. The Journal of General and Applied Microbiology, 55, 201-205.
-
(2009)
The Journal of General and Applied Microbiology
, vol.55
, pp. 201-205
-
-
Matsumoto, A.1
Kasai, H.2
Matsuo, Y.3
-
69
-
-
19944408938
-
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
-
Moran MA, Buchan A, Gonzalez JM, et al,. (2004) Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature, 432, 910-913.
-
(2004)
Nature
, vol.432
, pp. 910-913
-
-
Moran, M.A.1
Buchan, A.2
Gonzalez, J.M.3
-
70
-
-
39649103644
-
Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals
-
Murarka A, Dharmadi Y, Yazdani SS, Gonzalez R, (2008) Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals. Applied and Environmental Microbiology, 74, 1124-1135.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 1124-1135
-
-
Murarka, A.1
Dharmadi, Y.2
Yazdani, S.S.3
Gonzalez, R.4
-
73
-
-
36649000501
-
Phylogenetic ecology of the freshwater Actinobacteria acI lineage
-
Newton RJ, Jones SE, Helmus MR, McMahon KD, (2007) Phylogenetic ecology of the freshwater Actinobacteria acI lineage. Applied and Environment Microbiology, 73, 7169-7176.
-
(2007)
Applied and Environment Microbiology
, vol.73
, pp. 7169-7176
-
-
Newton, R.J.1
Jones, S.E.2
Helmus, M.R.3
McMahon, K.D.4
-
74
-
-
79952369878
-
A guide to the natural history of freshwater Lake Bacteria
-
Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S, (2011) A guide to the natural history of freshwater Lake Bacteria. Microbiology and Molecular Biology Reviews, 75, 14-49.
-
(2011)
Microbiology and Molecular Biology Reviews
, vol.75
, pp. 14-49
-
-
Newton, R.J.1
Jones, S.E.2
Eiler, A.3
McMahon, K.D.4
Bertilsson, S.5
-
75
-
-
0025271597
-
Molecular cloning of the protocatechuate 4, 5-dioxygenase genes of Pseudomonas paucimobilis
-
Noda Y, Nishikawa S, Shiozuka K, et al,. (1990) Molecular cloning of the protocatechuate 4, 5-dioxygenase genes of Pseudomonas paucimobilis. Journal of Bacteriology, 172, 2704-2709.
-
(1990)
Journal of Bacteriology
, vol.172
, pp. 2704-2709
-
-
Noda, Y.1
Nishikawa, S.2
Shiozuka, K.3
-
76
-
-
80052753042
-
Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem
-
Oh S, Caro-Quintero A, Tsementzi D, et al,. (2011) Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem. Applied and Environment Microbiology, 77, 6000-6011.
-
(2011)
Applied and Environment Microbiology
, vol.77
, pp. 6000-6011
-
-
Oh, S.1
Caro-Quintero, A.2
Tsementzi, D.3
-
77
-
-
70350203617
-
Climate change: A catalyst for global expansion of harmful cyanobacterial blooms
-
Paerl HW, Huisman J, (2009) Climate change: a catalyst for global expansion of harmful cyanobacterial blooms. Environmental Microbiology Reports, 1, 27-37.
-
(2009)
Environmental Microbiology Reports
, vol.1
, pp. 27-37
-
-
Paerl, H.W.1
Huisman, J.2
-
78
-
-
84861760530
-
IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
-
Peng Y, Leung HC, Yiu S-M, Chin FY, (2012) IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics, 28, 1420-1428.
-
(2012)
Bioinformatics
, vol.28
, pp. 1420-1428
-
-
Peng, Y.1
Leung, H.C.2
Yiu, S.-M.3
Chin, F.Y.4
-
79
-
-
84929883783
-
Freshwater microbial communities
-
Springer, Heidelberg
-
Pernthaler J, (2013) Freshwater microbial communities. In: The Prokaryotes, pp. 97-112. Springer, Heidelberg.
-
(2013)
The Prokaryotes
, pp. 97-112
-
-
Pernthaler, J.1
-
80
-
-
84880229514
-
Spectrophotometric methods for the determination of photosynthetic pigments in stratified lakes: A critical analysis based on comparisons with HPLC determinations in a model lake
-
Picazo A, Rochera C, Vicente E, Miracle MR, Camacho A, (2013) Spectrophotometric methods for the determination of photosynthetic pigments in stratified lakes: a critical analysis based on comparisons with HPLC determinations in a model lake. Limnetica, 32, 139-158.
-
(2013)
Limnetica
, vol.32
, pp. 139-158
-
-
Picazo, A.1
Rochera, C.2
Vicente, E.3
Miracle, M.R.4
Camacho, A.5
-
81
-
-
84986870589
-
The use of DAPI for identifying and counting aquatic microflora
-
Porter K, Feig YS, (1980) The use of DAPI for identifying and counting aquatic microflora. Limnology and Oceanography, 25, 943-948.
-
(1980)
Limnology and Oceanography
, vol.25
, pp. 943-948
-
-
Porter, K.1
Feig, Y.S.2
-
82
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP, (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One, 5, e9490.
-
(2010)
PLoS One
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
83
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European molecular biology open software suite. Trends in Genetics, 16, 276-277.
-
(2000)
Trends in Genetics
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
84
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke C, Schwientek P, Sczyrba A, et al,. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature, 499, 431-437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
-
85
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H, (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology, 132, 365-386.
-
(2000)
Methods in Molecular Biology
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
86
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, et al,. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biology, 5, e77.
-
(2007)
PLoS Biology
, vol.5
, pp. e77
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
-
87
-
-
58249085751
-
Lignocellulosic residues: Biodegradation and bioconversion by fungi
-
Sánchez C, (2009) Lignocellulosic residues: Biodegradation and bioconversion by fungi. Biotechnology Advances, 27, 185-194.
-
(2009)
Biotechnology Advances
, vol.27
, pp. 185-194
-
-
Sánchez, C.1
-
88
-
-
0037882329
-
An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization
-
Sekar R, Pernthaler A, Pernthaler J, et al,. (2003) An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Applied and Environmental Microbiology, 69, 2928-2935.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 2928-2935
-
-
Sekar, R.1
Pernthaler, A.2
Pernthaler, J.3
-
89
-
-
33749557420
-
Microbial rhodopsins: Functional versatility and genetic mobility
-
Sharma AK, Spudich JL, Doolittle WF, (2006) Microbial rhodopsins: functional versatility and genetic mobility. Trends in Microbiology, 14, 463-469.
-
(2006)
Trends in Microbiology
, vol.14
, pp. 463-469
-
-
Sharma, A.K.1
Spudich, J.L.2
Doolittle, W.F.3
-
90
-
-
40949103188
-
Actinorhodopsins: Proteorhodopsin-like gene sequences found predominantly in non-marine environments
-
Sharma AK, Zhaxybayeva O, Papke RT, Doolittle WF, (2008) Actinorhodopsins: Proteorhodopsin-like gene sequences found predominantly in non-marine environments. Environmental Microbiology, 10, 1039-1056.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 1039-1056
-
-
Sharma, A.K.1
Zhaxybayeva, O.2
Papke, R.T.3
Doolittle, W.F.4
-
91
-
-
67549134809
-
Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria
-
Sharma AK, Sommerfeld K, Bullerjahn GS, et al,. (2009) Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria. The ISME Journal, 3, 726-737.
-
(2009)
The ISME Journal
, vol.3
, pp. 726-737
-
-
Sharma, A.K.1
Sommerfeld, K.2
Bullerjahn, G.S.3
-
93
-
-
13344278704
-
Ecological risk assesment of atrazine in North American surface waters
-
Solomon KR, Baker DB, Richards RP, et al,. (1996) Ecological risk assesment of atrazine in North American surface waters. Environmental Toxicology and Chemistry, 15, 31-76.
-
(1996)
Environmental Toxicology and Chemistry
, vol.15
, pp. 31-76
-
-
Solomon, K.R.1
Baker, D.B.2
Richards, R.P.3
-
95
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, et al,. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Research, 29, 22-28.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
-
97
-
-
0037192923
-
Inositol phosphates in the environment
-
Turner BL, Paphazy MJ, Haygarth PM, McKelvie ID, (2002) Inositol phosphates in the environment. Philosophical Transactions of the Royal Society B: Biological Sciences, 357, 449-469.
-
(2002)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.357
, pp. 449-469
-
-
Turner, B.L.1
Paphazy, M.J.2
Haygarth, P.M.3
McKelvie, I.D.4
-
98
-
-
0028572835
-
Sulfonates: A novel class of organic sulfur compounds in marine sediments
-
Vairavamurthy A, Zhou W, Eglinton T, Manowitz B, (1994) Sulfonates: a novel class of organic sulfur compounds in marine sediments. Geochimica et Cosmochimica Acta, 58, 4681-4687.
-
(1994)
Geochimica et Cosmochimica Acta
, vol.58
, pp. 4681-4687
-
-
Vairavamurthy, A.1
Zhou, W.2
Eglinton, T.3
Manowitz, B.4
-
99
-
-
84890649331
-
Limnological management of the Amadorio Reservoir (Spain) during an extremely dry summer
-
Vicente E, Camacho A, Sendra M, et al,. (2000) Limnological management of the Amadorio Reservoir (Spain) during an extremely dry summer. Verhandlungen des Internationalen Verein Limnologie, 27, 2298-2302.
-
(2000)
Verhandlungen des Internationalen Verein Limnologie
, vol.27
, pp. 2298-2302
-
-
Vicente, E.1
Camacho, A.2
Sendra, M.3
-
100
-
-
51249177728
-
Cell bound and extracellular phosphatase activities of cyanobacterial isolates
-
Whitton BA, Grainger SLJ, Hawley GRW, Simon JW, (1991) Cell bound and extracellular phosphatase activities of cyanobacterial isolates. Microbial Ecology, 21, 85-98.
-
(1991)
Microbial Ecology
, vol.21
, pp. 85-98
-
-
Whitton, B.A.1
Grainger, S.L.J.2
Hawley, G.R.W.3
Simon, J.W.4
-
101
-
-
0027293730
-
Purification and characterization of protocatechuate 2, 3-dioxygenase from Bacillus macerans: A new extradiol catecholic dioxygenase
-
Wolgel S, Dege J, Perkins-Olson P, et al,. (1993) Purification and characterization of protocatechuate 2, 3-dioxygenase from Bacillus macerans: a new extradiol catecholic dioxygenase. Journal of Bacteriology, 175, 4414-4426.
-
(1993)
Journal of Bacteriology
, vol.175
, pp. 4414-4426
-
-
Wolgel, S.1
Dege, J.2
Perkins-Olson, P.3
-
102
-
-
0347130868
-
Within-and between-lake variability in the composition of bacterioplankton communities: Investigations using multiple spatial scales
-
Yannarell AC, Triplett EW, (2004) Within-and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales. Applied and Environmental Microbiology, 70, 214-223.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 214-223
-
-
Yannarell, A.C.1
Triplett, E.W.2
-
103
-
-
0037178021
-
Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
-
Zwart G, Crump BC, Agterveld MPKV, Hagen F, Han SK, (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquatic Microbial Ecology, 28, 141-155.
-
(2002)
Aquatic Microbial Ecology
, vol.28
, pp. 141-155
-
-
Zwart, G.1
Crump, B.C.2
Agterveld, M.3
Hagen, F.4
Han, S.K.5
|