-
1
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson, M.J. (2001) A new method for non-parametric multivariate analysis of variance. Aust Ecol 26: 2-46.
-
(2001)
Aust Ecol
, vol.26
, pp. 2-46
-
-
Anderson, M.J.1
-
2
-
-
70149104815
-
The boundless carbon cycle
-
Battin, T.J., Luyssaert, S., Kaplan, L.A., Aufdenkampe, A.K., Richter, A., and Tranvik, L.J. (2009) The boundless carbon cycle. Nat Geosci 2: 598-600.
-
(2009)
Nat Geosci
, vol.2
, pp. 598-600
-
-
Battin, T.J.1
Luyssaert, S.2
Kaplan, L.A.3
Aufdenkampe, A.K.4
Richter, A.5
Tranvik, L.J.6
-
3
-
-
77950645212
-
Artificial and natural duplicates in pyrosequencing reads of metagenomic data
-
doi:10.1186/1471-2105-11-187.
-
Beifang, N., Limin, F., Shulei, S., and Weizhong, L. (2010) Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics 11: 187. doi:10.1186/1471-2105-11-187.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 187
-
-
Beifang, N.1
Limin, F.2
Shulei, S.3
Weizhong, L.4
-
4
-
-
9244231504
-
Supply of dissolved organic matter to aquatic ecosystems: autochthonous sources
-
In Findlay, S.E.G., and Sinsabaugh, R.L. (eds). New York, NY, USA: Academic Press.
-
Bertilsson, S., and Jones, J.B., Jr (2003) Supply of dissolved organic matter to aquatic ecosystems: autochthonous sources. In Aquatic Ecosystems: Interactivity of Dissolved Organic Matter. Findlay, S.E.G., and Sinsabaugh, R.L. (eds). New York, NY, USA: Academic Press, pp. 3-24.
-
(2003)
Aquatic Ecosystems: Interactivity of Dissolved Organic Matter
, pp. 3-24
-
-
Bertilsson, S.1
Jones Jr., J.B.2
-
5
-
-
58149354386
-
Protein material costs: single atoms can make an evolutionary difference
-
Bragg, J.G., and Wagner, A. (2009) Protein material costs: single atoms can make an evolutionary difference. Trends Genet 25: 5-8.
-
(2009)
Trends Genet
, vol.25
, pp. 5-8
-
-
Bragg, J.G.1
Wagner, A.2
-
6
-
-
43949120140
-
Diversity, ecology, and genomics of the Roseobacterclade: a short overview
-
Brinkhoff, T., Giebel, H.A., and Simon, M. (2008) Diversity, ecology, and genomics of the Roseobacterclade: a short overview. Arch Microbiol 189: 531-539.
-
(2008)
Arch Microbiol
, vol.189
, pp. 531-539
-
-
Brinkhoff, T.1
Giebel, H.A.2
Simon, M.3
-
7
-
-
0041365972
-
Particulate and dissolved phosphorus forms in freshwater: composition and analysis
-
Broberg, O., and Persson, G. (1988) Particulate and dissolved phosphorus forms in freshwater: composition and analysis. Hydrobiologia 170: 61-90.
-
(1988)
Hydrobiologia
, vol.170
, pp. 61-90
-
-
Broberg, O.1
Persson, G.2
-
8
-
-
36348995417
-
DNA extraction method affects microbial community profiles from soils and sediments
-
Carrigg, C., Rice, O., Kavanagh, S., Collins, G., and O.'Flaherty, V. (2007) DNA extraction method affects microbial community profiles from soils and sediments. Appl Microbiol Biotechnol 77: 955-964.
-
(2007)
Appl Microbiol Biotechnol
, vol.77
, pp. 955-964
-
-
Carrigg, C.1
Rice, O.2
Kavanagh, S.3
Collins, G.4
O.'Flaherty, V.5
-
9
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
Ciccarelli, F.D., Doerks, T., von Mering, C., Creevey, C.J., Snel, B., and Bork, P. (2006) Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283-1287.
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
10
-
-
69949095770
-
Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France)
-
Debroas, D., Humbert, J.F., Enault, F., Bronner, G., Faubladier, M., and Cornillot, E. (2009) Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France). Environ Microbiol 11: 2412-2424.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2412-2424
-
-
Debroas, D.1
Humbert, J.F.2
Enault, F.3
Bronner, G.4
Faubladier, M.5
Cornillot, E.6
-
11
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.U., etal. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
Hallam, S.J.5
Frigaard, N.U.6
-
12
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale, E.A., Edwards, R.A., Hall, D., Angly, F., Breitbart, M., Brulc, J.M., etal. (2008) Functional metagenomic profiling of nine biomes. Nature 452: 629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
-
13
-
-
33745852915
-
The global abundance and size distribution of lakes, ponds, and impoundments
-
Downing, J.A., Prairie, Y.T., Cole, J.J., Duarte, C.M., Tranvik, L.J., Striegl, R.G., etal. (2006) The global abundance and size distribution of lakes, ponds, and impoundments. Limnol Oceanogr 51: 2388-2397.
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 2388-2397
-
-
Downing, J.A.1
Prairie, Y.T.2
Cole, J.J.3
Duarte, C.M.4
Tranvik, L.J.5
Striegl, R.G.6
-
14
-
-
0001159336
-
The fate of marine autotrophic production
-
Duarte, C.M., and Cebrián, J. (1996) The fate of marine autotrophic production. Limnol Oceanogr 41: 1758-1766.
-
(1996)
Limnol Oceanogr
, vol.41
, pp. 1758-1766
-
-
Duarte, C.M.1
Cebrián, J.2
-
15
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
10044278979
-
Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes
-
Eiler, A., and Bertilsson, S. (2004) Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 6: 1228-1243.
-
(2004)
Environ Microbiol
, vol.6
, pp. 1228-1243
-
-
Eiler, A.1
Bertilsson, S.2
-
17
-
-
34249879036
-
Flavobacteria blooms in four eutrophic lakes: linking population dynamics of freshwater bacterioplankton to resource availability
-
Eiler, A., and Bertilsson, S. (2007) Flavobacteria blooms in four eutrophic lakes: linking population dynamics of freshwater bacterioplankton to resource availability. Appl Environ Microbiol 73: 3511-3518.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3511-3518
-
-
Eiler, A.1
Bertilsson, S.2
-
18
-
-
84855951093
-
Coherent dynamics and association networks among lake bacterioplankton taxa
-
Eiler, A., Heinrich, F., and Bertilsson, S. (2012) Coherent dynamics and association networks among lake bacterioplankton taxa. ISME J 6: 330-342.
-
(2012)
ISME J
, vol.6
, pp. 330-342
-
-
Eiler, A.1
Heinrich, F.2
Bertilsson, S.3
-
19
-
-
35948953592
-
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of Bacteria, Archaea, Fungi, and viruses in soil
-
Fierer, N., Breitbart, M., Nulton, J., Salamon, P., Lozupone, C., Jones, R., etal. (2007) Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of Bacteria, Archaea, Fungi, and viruses in soil. Appl Environ Microbiol 73: 7059-7066.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 7059-7066
-
-
Fierer, N.1
Breitbart, M.2
Nulton, J.3
Salamon, P.4
Lozupone, C.5
Jones, R.6
-
20
-
-
79960643348
-
Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities
-
Fine, P.V.A., and Kembel, S.W. (2011) Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities. Ecography 34: 552-565.
-
(2011)
Ecography
, vol.34
, pp. 552-565
-
-
Fine, P.V.A.1
Kembel, S.W.2
-
21
-
-
84876515907
-
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
-
doi:10.1093/nar/gks1094.
-
Franceschini, A., Szklarczyk, D., Frankild, S., Kuhn, M., Simonovic, M., Roth, A., etal. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 41 (Database issue): D808-D815. doi:10.1093/nar/gks1094.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
-
22
-
-
84871359129
-
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
-
Garcia, S.L., McMahon, K.D., Martinez-Garcia, M., Sricastava, A., Sczyrba, A., Stepanauskas, R., etal. (2012) Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. ISME J 7: 137-147.
-
(2012)
ISME J
, vol.7
, pp. 137-147
-
-
Garcia, S.L.1
McMahon, K.D.2
Martinez-Garcia, M.3
Sricastava, A.4
Sczyrba, A.5
Stepanauskas, R.6
-
23
-
-
60849095134
-
Quantifying environmental adaptation of metabolic pathways in metagenomics
-
Gianoulis, T.A., Raes, J., Patel, P.V., Bjornson, R., Korbel, J.O., Letunic, I., etal. (2009) Quantifying environmental adaptation of metabolic pathways in metagenomics. Proc Natl Acad Sci USA 106: 1374-1379.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1374-1379
-
-
Gianoulis, T.A.1
Raes, J.2
Patel, P.V.3
Bjornson, R.4
Korbel, J.O.5
Letunic, I.6
-
24
-
-
80053457314
-
Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel
-
Gilbert, J.A., Meyer, F., Schriml, L., Joint, I.R., Muhling, M., and Field, D. (2010) Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel. Stand Genomic Sci 3: 183-193.
-
(2010)
Stand Genomic Sci
, vol.3
, pp. 183-193
-
-
Gilbert, J.A.1
Meyer, F.2
Schriml, L.3
Joint, I.R.4
Muhling, M.5
Field, D.6
-
25
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
Giovannoni, S.J., Tripp, H.J., Givan, S., Podar, M., Vergin, K.L., Baptista, D., et al. (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309: 1242-1245.
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
Baptista, D.6
-
26
-
-
17644439150
-
Bacterioplankton composition of lakes and oceans: a first comparson based on fluorescence in situ hybridization
-
Glöckner, F.O., Fuchs, B., and Amann, R. (1999) Bacterioplankton composition of lakes and oceans: a first comparson based on fluorescence in situ hybridization. Appl Environ Microbiol 65: 3721-3726.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3721-3726
-
-
Glöckner, F.O.1
Fuchs, B.2
Amann, R.3
-
27
-
-
37649025929
-
The ecodist package for dissimilarity-based analysis of ecological data
-
Goslee, S.C., and Urban, D.L. (2007) The ecodist package for dissimilarity-based analysis of ecological data. J Stat Softw 22: i07.
-
(2007)
J Stat Softw
, vol.22
-
-
Goslee, S.C.1
Urban, D.L.2
-
28
-
-
84868369211
-
Streamlining and core genome conservation among highly divergent members of the SAR11 clade
-
e00252-e00212, doi:10.1128/mBio.00252-12.
-
Grote, J., Thrash, J.C., Huggett, M.J., Landry, Z.C., Carini, P., Giovannoni, S.J., and Rappé, M.S. (2012) Streamlining and core genome conservation among highly divergent members of the SAR11 clade. Mbio 3: e00252-12. doi:10.1128/mBio.00252-12.
-
(2012)
Mbio
, vol.3
-
-
Grote, J.1
Thrash, J.C.2
Huggett, M.J.3
Landry, Z.C.4
Carini, P.5
Giovannoni, S.J.6
Rappé, M.S.7
-
29
-
-
84858640813
-
The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living Polynucleobacter population
-
Hahn, M.W., Scheuerl, T., Jezberová, J., Koll, U., Jezbera, J., Šimek, K., etal. (2012) The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living Polynucleobacter population. PLoS ONE 7: e32772.
-
(2012)
PLoS ONE
, vol.7
-
-
Hahn, M.W.1
Scheuerl, T.2
Jezberová, J.3
Koll, U.4
Jezbera, J.5
Šimek, K.6
-
30
-
-
65349154502
-
Detection and expression of the phosphonate transporter gene phnD in marine and freshwater picocyanobacteria
-
Ilikchyan, I.N., McKay, R.M.L., Zehr, J.P., Dyhrman, S.T., and Bullerjahn, G.S. (2009) Detection and expression of the phosphonate transporter gene phnD in marine and freshwater picocyanobacteria. Environ Microbiol 11: 1314-1324.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1314-1324
-
-
Ilikchyan, I.N.1
McKay, R.M.L.2
Zehr, J.P.3
Dyhrman, S.T.4
Bullerjahn, G.S.5
-
31
-
-
33846476676
-
Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
-
King, G.M., and Weber, C.F. (2007) Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat Rev Microbiol 5: 107-118.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 107-118
-
-
King, G.M.1
Weber, C.F.2
-
32
-
-
79956292821
-
Bacterioplankton community composition in 67 Finnish lakes differs according to trophic status
-
Kolmonen, E., Haukka, K., Rantala-Ylinen, A., Rajaniemi-Wacklin, P., Lepistö, L., and Sivonen, K. (2011) Bacterioplankton community composition in 67 Finnish lakes differs according to trophic status. Aquat Microb Ecol 62: 241-250.
-
(2011)
Aquat Microb Ecol
, vol.62
, pp. 241-250
-
-
Kolmonen, E.1
Haukka, K.2
Rantala-Ylinen, A.3
Rajaniemi-Wacklin, P.4
Lepistö, L.5
Sivonen, K.6
-
33
-
-
44649171625
-
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
-
198.
-
Kunin, V., Raes, J., Harris, J.K., Spear, J.R., Walker, J.J., Ivanova, N., etal. (2008) Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol 4: 198.
-
(2008)
Mol Syst Biol
, vol.4
-
-
Kunin, V.1
Raes, J.2
Harris, J.K.3
Spear, J.R.4
Walker, J.J.5
Ivanova, N.6
-
34
-
-
79960004119
-
Interactive tree of life v2: online annotation and display of phylogenetic trees made easy
-
Letunic, I., and Bork, P. (2011) Interactive tree of life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39: 475-478.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 475-478
-
-
Letunic, I.1
Bork, P.2
-
35
-
-
0033784725
-
Bacterioplankton community composition in five lakes differing in trophic status and humic content
-
Lindström, E.S. (2000) Bacterioplankton community composition in five lakes differing in trophic status and humic content. Microb Ecol 40: 104-113.
-
(2000)
Microb Ecol
, vol.40
, pp. 104-113
-
-
Lindström, E.S.1
-
36
-
-
29144463361
-
Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time
-
Lindström, E.S., Kamst-Van Agterveld, M.P., and Zwart, G. (2005) Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time. Appl Environ Microbiol 71: 8201-8206.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8201-8206
-
-
Lindström, E.S.1
Kamst-Van Agterveld, M.P.2
Zwart, G.3
-
37
-
-
69749086719
-
Infrequent marine-freshwater transitions in the microbial world
-
Logares, R., Bråte, J., Bertilsson, S., Clasen, J.L., Shalchian-Tabrizi, K., and Rengefors, K. (2009) Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol 17: 414-422.
-
(2009)
Trends Microbiol
, vol.17
, pp. 414-422
-
-
Logares, R.1
Bråte, J.2
Bertilsson, S.3
Clasen, J.L.4
Shalchian-Tabrizi, K.5
Rengefors, K.6
-
38
-
-
34547433545
-
Global patterns in bacterial diversity
-
Lozupone, C.A., and Knight, R. (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104: 11436-11440.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 11436-11440
-
-
Lozupone, C.A.1
Knight, R.2
-
39
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, etal. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
-
40
-
-
84355163060
-
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
-
Martinez-Garcia, M., Swan, B.K., Poulton, N.J., Gomez, M.L., Masland, D., Sieracki, M.E., and Stepanauskas, R. (2012) High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J 6: 113-123.
-
(2012)
ISME J
, vol.6
, pp. 113-123
-
-
Martinez-Garcia, M.1
Swan, B.K.2
Poulton, N.J.3
Gomez, M.L.4
Masland, D.5
Sieracki, M.E.6
Stepanauskas, R.7
-
41
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny, J.B.H., Bohannan, B.J.M., Brown, J.H., Colwell, R.K., Fuhrman, J.A., etal. (2006) Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4: 102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
-
42
-
-
79952369878
-
A guide to the natural history of freshwater lake bacteria
-
Newton, R.J., Jones, S.E., Eiler, A., McMahon, K.D., and Bertilsson, S. (2011) A guide to the natural history of freshwater lake bacteria. Microbiol Mol Biol Rev 75: 14-49.
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 14-49
-
-
Newton, R.J.1
Jones, S.E.2
Eiler, A.3
McMahon, K.D.4
Bertilsson, S.5
-
43
-
-
80052753042
-
Metagenomic insights into the evolution, function and complexity iof the planktonic microbial community of Lake Lanier, a temperate freshwater system
-
Oh, S., Caro-Quintero, A., Tsementsi, D., Deleon-Rodriguez, N., Luo, C., Poretsky, R., and Konstantinidis, K. (2011) Metagenomic insights into the evolution, function and complexity iof the planktonic microbial community of Lake Lanier, a temperate freshwater system. Appl Environ Microbiol 77: 6000-6011.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 6000-6011
-
-
Oh, S.1
Caro-Quintero, A.2
Tsementsi, D.3
Deleon-Rodriguez, N.4
Luo, C.5
Poretsky, R.6
Konstantinidis, K.7
-
44
-
-
84906945020
-
-
Vegan: Community Ecology Package.
-
Oksanen, J., Kindt, R., Legendre, P., O'Hara, B., Simpson, G.L., Solymos, P., etal. (2008) Vegan: Community Ecology Package. http://cran.r-project.org/web/packages/vegan/vegan.pdf
-
(2008)
-
-
Oksanen, J.1
Kindt, R.2
Legendre, P.3
O'Hara, B.4
Simpson, G.L.5
Solymos, P.6
-
45
-
-
84865319078
-
Distinct and diverse bacterioplankton communities in the hypolimnion of boreal lakes are dominated by candidate division OD1
-
Peura, S., Eiler, A., Bertilsson, S., Nykänen, H., Tiirola, M., and Jones, R.I. (2012) Distinct and diverse bacterioplankton communities in the hypolimnion of boreal lakes are dominated by candidate division OD1. ISME J 6: 1640-1652.
-
(2012)
ISME J
, vol.6
, pp. 1640-1652
-
-
Peura, S.1
Eiler, A.2
Bertilsson, S.3
Nykänen, H.4
Tiirola, M.5
Jones, R.I.6
-
46
-
-
78751579207
-
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
-
Quaiser, A., Zivanovic, Y., Moreira, D., and López-Garcia, P. (2011) Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J 5: 285-304.
-
(2011)
ISME J
, vol.5
, pp. 285-304
-
-
Quaiser, A.1
Zivanovic, Y.2
Moreira, D.3
López-Garcia, P.4
-
47
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
-
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., etal. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: D590-D594.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
-
48
-
-
33847280283
-
Prediction of effective genome size in metagenomic samples
-
Raes, J., Koerbel, J.O., Lercher, M.J., von Mering, C., and Bork, P. (2007) Prediction of effective genome size in metagenomic samples. Genome Biol 8: R10.
-
(2007)
Genome Biol
, vol.8
-
-
Raes, J.1
Koerbel, J.O.2
Lercher, M.J.3
von Mering, C.4
Bork, P.5
-
49
-
-
79952719497
-
Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data
-
Raes, J., Letunic, I., Yamada, T., Jensen, L.J., and Bork, P. (2011) Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data. Mol Syst Biol 7: 437.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 437
-
-
Raes, J.1
Letunic, I.2
Yamada, T.3
Jensen, L.J.4
Bork, P.5
-
50
-
-
83755163018
-
Detecting novel associations in large data sets
-
Reshef, D.N., Reshef, Y.A., Finucane, H.K., Grossman, S.R., McVean, G., Turnbaugh, P.J., etal. (2011) Detecting novel associations in large data sets. Science 334: 1518-1524.
-
(2011)
Science
, vol.334
, pp. 1518-1524
-
-
Reshef, D.N.1
Reshef, Y.A.2
Finucane, H.K.3
Grossman, S.R.4
McVean, G.5
Turnbaugh, P.J.6
-
51
-
-
10944226351
-
Metagenomics: genomic analysis of microbial communities
-
Riesenfeld, C.R., Schloss, P.D., and Handelsman, J. (2004) Metagenomics: genomic analysis of microbial communities. Annu Rev Genet 38: 525-552.
-
(2004)
Annu Rev Genet
, vol.38
, pp. 525-552
-
-
Riesenfeld, C.R.1
Schloss, P.D.2
Handelsman, J.3
-
52
-
-
33947238287
-
The sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical pacific
-
Rusch, D.B., Halpern, A.L., Sutton, G., Heidelberg, K.B., Williamson, S., Yooseph, S., etal. (2007) The sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical pacific. PLoS Biol 5: 398-431.
-
(2007)
PLoS Biol
, vol.5
, pp. 398-431
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
-
53
-
-
84986866740
-
Factors regulating phytoplankton production and standing crop in the world's lakes
-
Schindler, D.W. (1978) Factors regulating phytoplankton production and standing crop in the world's lakes. Limnol Oceanogr 23: 478-486.
-
(1978)
Limnol Oceanogr
, vol.23
, pp. 478-486
-
-
Schindler, D.W.1
-
54
-
-
33947215475
-
Camera: a community resource for metagenomics
-
Seshadri, R., Kravitz, S.A., Smarr, L., Gilna, P., and Frazier, M. (2007) Camera: a community resource for metagenomics. PLoS Biol 5: e75.
-
(2007)
PLoS Biol
, vol.5
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
55
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web Servers
-
Stamatakis, A., Hoover, P., and Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web Servers. Syst Biol 57: 758-771.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
56
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey, J.D. (2002) A direct approach to false discovery rates. J R Stat Soc Ser B 64: 479-498.
-
(2002)
J R Stat Soc Ser B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
57
-
-
0042902833
-
The COG database: an update version includes eukaryotes
-
41. doi:10.1186/1471-2105-4-41.
-
Tatusov, R.L., Fedorova, N.D., Jackson, J.D., Jacobs, A.R., Kiryutin, B., etal. (2003) The COG database: an update version includes eukaryotes. BMC Bioinformatics 4: 41. doi:10.1186/1471-2105-4-41.
-
(2003)
BMC Bioinformatics
, vol.4
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
58
-
-
77952355458
-
Lakes and reservoirs as regulators of carbon cycling and climate
-
Tranvik, L., Downing, J., Cotner, J., Loiselle, S., etal. (2009) Lakes and reservoirs as regulators of carbon cycling and climate. Limnol Oceanogr 54: 2298-2314.
-
(2009)
Limnol Oceanogr
, vol.54
, pp. 2298-2314
-
-
Tranvik, L.1
Downing, J.2
Cotner, J.3
Loiselle, S.4
-
59
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe, S.G., von Mering, C., Kobayashi, A., Salamov, A.A., Chen, K., Chang, H.W., etal. (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
-
60
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G.M., Tiedje, J.M., and Cole, J.R. (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
61
-
-
0036909621
-
Phylogenies and community ecology
-
Webb, C.O., Ackerly, D.D., McPeek, M.A., and Donoghue, M.J. (2002) Phylogenies and community ecology. Annu Rev Ecol Syst 33: 475-505.
-
(2002)
Annu Rev Ecol Syst
, vol.33
, pp. 475-505
-
-
Webb, C.O.1
Ackerly, D.D.2
McPeek, M.A.3
Donoghue, M.J.4
-
62
-
-
84906945016
-
-
Phylocom: Software for the analysis of phylogenetic community structure and character evolution (with phylomatic and ecoevolve). User's manual, version 4.2 [WWW document]. URL
-
Webb, C.O., Ackerly, D.D., and Kembel, S. (2011). Phylocom: Software for the analysis of phylogenetic community structure and character evolution (with phylomatic and ecoevolve). User's manual, version 4.2 [WWW document]. URL http://www.phylodiversity.net/phylocom/
-
(2011)
-
-
Webb, C.O.1
Ackerly, D.D.2
Kembel, S.3
-
63
-
-
71749111168
-
Analysis and comparison of very large metagenomes with fast clustering and functional annotation
-
doi:10.1186/1471-2105-10-359.
-
Weizhong, L. (2009) Analysis and comparison of very large metagenomes with fast clustering and functional annotation. BMC Bioinformatics 10: 359. doi:10.1186/1471-2105-10-359.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 359
-
-
Weizhong, L.1
-
64
-
-
12244257532
-
Geographic and environmental sources of variation in lake bacterial community composition
-
Yannarell, A.C., and Triplett, E.W. (2005) Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microbiol 71: 227-239.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 227-239
-
-
Yannarell, A.C.1
Triplett, E.W.2
-
65
-
-
0037178021
-
Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
-
Zwart, G., Crump, B.C., Agterveld, M.P.K.V., Hagen, F., and Han, S.K. (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28: 141-155.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 141-155
-
-
Zwart, G.1
Crump, B.C.2
Agterveld, M.P.K.V.3
Hagen, F.4
Han, S.K.5
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