Genomic signature of multidrug-resistant salmonella enterica serovar Typhi isolates related to a massive outbreak in Zambia between 2010 and 2012

Journal of Clinical Microbiology

Volumn 53, Issue 1, 2015, Pages 262-272

  Hendriksen, Rene S ^a   Leekitcharoenphon, Pimlapas ^a   Lukjancenko, Oksana ^a   Lukwesa Musyani, Chileshe ^b   Tambatamba, Bushimbwa ^c   Mwaba, John ^b   Kalonda, Annie ^d   Nakazwe, Ruth ^b   Kwenda, Geoffrey ^d   Jensen, Jacob Dyring ^a   Svendsen, Christina A ^a   Dittmann, Karen K ^a   Kaas, Rolf S ^a   Cavaco, Lina M ^a   Aarestrup, Frank M ^a   Hasman, Henrik ^a   Mwansa, James C L ^b  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b UNIVERSITY TEACHING HOSPITAL   (Zambia)

^c MINISTRY OF HEALTH   (Zambia)

^d UNIVERSITY OF ZAMBIA   (Zambia)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; APRAMYCIN; AZITHROMYCIN; BETA LACTAM ANTIBIOTIC; CEFTIOFUR; CHLORAMPHENICOL; CIPROFLOXACIN; COLISTIN; DNA FRAGMENT; DNA TOPOISOMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING); FLORFENICOL; GENTAMICIN; NALIDIXIC ACID; NEOMYCIN; SPECTINOMYCIN; STREPTOMYCIN; SULFAMETHOXAZOLE; TETRACYCLINE; TRIMETHOPRIM; ANTIINFECTIVE AGENT;

ADOLESCENT; ADULT; AFRICA; ANTIBIOTIC RESISTANCE; ANTIMICROBIAL RESISTANCE GENE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BIOINFORMATICS; BLA TEM 1 GENE; CATA1 GENE; CELL LINEAGE; CHILD; CHROMOSOME TRANSLOCATION; CLONAL VARIATION; DFRA7 GENE; EPIDEMIC; FEMALE; GENE DELETION; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC INCOMPATIBILITY; GENETIC SIMILARITY; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; GENOMIC SIGNATURE; HAPLOTYPE; HUMAN; INDIA; INTEGRON; MALE; MINIMUM INHIBITORY CONCENTRATION; MORTALITY; MULTIDRUG RESISTANT SALMONELLA ENTERICA; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PATHOPHYSIOLOGY; PHENOTYPE; PHYLOGENY; PLASMID; PRESCHOOL CHILD; REPLICON; RETROSPECTIVE STUDY; SALMONELLA ENTERICA; SCHOOL CHILD; SEROTYPE; SINGLE NUCLEOTIDE POLYMORPHISM; STRA GENE; STRB GENE; SUL1 GENE; SUL2 GENE; TYPHOID FEVER; WHOLE GENOME SEQUENCE TYPING; YOUNG ADULT; ZAMBIA; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIUM CONJUGATION; CLASSIFICATION; DRUG EFFECTS; GENE ORDER; GENE TRANSLOCATION; GENETICS; GENOMICS; HISTORY; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MULTIDRUG RESISTANCE; MUTATION; SALMONELLA ENTERICA SEROVAR TYPHI;

SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHI; SALMONELLA TYPHI;

ANTI-BACTERIAL AGENTS; CHILD; CHILD, PRESCHOOL; CHROMOSOMES, BACTERIAL; CONJUGATION, GENETIC; DISEASE OUTBREAKS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; EVOLUTION, MOLECULAR; FEMALE; GENE ORDER; GENES, BACTERIAL; GENOME, BACTERIAL; GENOMICS; HAPLOTYPES; HISTORY, 21ST CENTURY; HUMANS; MALE; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; MUTATION; PHYLOGENY; PLASMIDS; POLYMORPHISM, SINGLE NUCLEOTIDE; SALMONELLA TYPHI; SEQUENCE DELETION; TRANSLOCATION, GENETIC; TYPHOID FEVER; ZAMBIA;

EID: 84919477769     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02026-14     Document Type: Article

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