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Volumn 5, Issue AUG, 2014, Pages

Key hub and bottleneck genes differentiate the macrophage response to virulent and attenuated Mycobacterium bovis

Author keywords

BCG; Cattle; Gene interaction network; Macrophage; Mycobacterium bovis; Network; Tuberculosis

Indexed keywords

ANIMAL CELL; ARTICLE; CELL DEATH; EGR1 GENE; FEMALE; FLOW CYTOMETRY; GENE; GENE EXPRESSION; HOLSTEIN-FRIESIAN CATTLE; IKBKE GENE; MACROPHAGE; MICROARRAY ANALYSIS; MYCOBACTERIUM BOVIS; NFKB1 GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; ONCOGENE MYC; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRULENCE; BACTERIAL SURVIVAL; BOVINE TUBERCULOSIS; CELL COUNT; DENSITY GRADIENT CENTRIFUGATION; DOWN REGULATION; GENE INTERACTION; GENE ONTOLOGY; GENE REGULATORY NETWORK; HOST PATHOGEN INTERACTION; HUMAN; IMMUNE RESPONSE; IMMUNOMODULATION; PROTEIN MICROARRAY; RNA EXTRACTION; UPREGULATION;

EID: 84919451844     PISSN: None     EISSN: 16643224     Source Type: Journal    
DOI: 10.3389/fimmu.2014.00422     Document Type: Article
Times cited : (14)

References (83)
  • 1
    • 23144464363 scopus 로고    scopus 로고
    • Transcriptional regulation and transformation by Myc proteins
    • doi: 10.1038/nrml703
    • Adhikary, S, and Eilers, M (2005). Transcriptional regulation and transformation by Myc proteins. Nat Rev Mol Cell Biol 6, 635-645. doi: 10.1038/nrml703.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 635-645
    • Adhikary, S.1    Eilers, M.2
  • 2
    • 38349164409 scopus 로고    scopus 로고
    • Computing topological parameters of biological networks
    • doi: 10.1093/bioinformatics/btm554
    • Assenov, Y, Ramirez, F, Schelhorn, SE, Lengauer, T, and Albrecht, M (2008). Computing topological parameters of biological networks. Bioinformatics 24, 282-284. doi: 10.1093/bioinformatics/btm554.
    • (2008) Bioinformatics , vol.24 , pp. 282-284
    • Assenov, Y.1    Ramirez, F.2    Schelhorn, S.E.3    Lengauer, T.4    Albrecht, M.5
  • 3
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, AL, and Albert, R (1999). Emergence of scaling in random networks. Science 286, 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 4
    • 0037218786 scopus 로고    scopus 로고
    • Regulation of tumor necrosis factor alpha gene expression by mycobacteria involves the assembly of a unique enhanceosome dependent on the coactivator proteins CBP/p300
    • Barthel, R, Tsytsykova, AV, Barczak, AK, Tsai, EY, Dascher, CC, Brenner, MB, and Goldfeld, AE (2003). Regulation of tumor necrosis factor alpha gene expression by mycobacteria involves the assembly of a unique enhanceosome dependent on the coactivator proteins CBP/p300. Mol Cell Biol 23, 526-533.
    • (2003) Mol Cell Biol , vol.23 , pp. 526-533
    • Barthel, R.1    Tsytsykova, A.V.2    Barczak, A.K.3    Tsai, E.Y.4    Dascher, C.C.5    Brenner, M.B.6    Goldfeld, A.E.7
  • 6
    • 0033605241 scopus 로고    scopus 로고
    • A historical and molecular phylogeny of BCG strains
    • Behr, MA, and Small, PM (1999). A historical and molecular phylogeny of BCG strains. Vaccine 17, 915-922.
    • (1999) Vaccine , vol.17 , pp. 915-922
    • Behr, M.A.1    Small, P.M.2
  • 7
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - a practical and powerful approach to multiple testing
    • Benjamini, Y, and Hochberg, Y (1995). Controlling the false discovery rate - a practical and powerful approach to multiple testing. JRoy Stat Soc BMet 57, 289-300.
    • (1995) J Roy Stat Soc B Met , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 9
    • 0031571868 scopus 로고    scopus 로고
    • Cytokine patterns in tuberculous and sarcoid granulomas: correlations with histopathologic features of the granulomatous response
    • Bergeron, A, Bonay, M, Kambouchner, M, Lecossier, D, Riquet, M, Soler, P, Hance, A, and Tazi, A (1997). Cytokine patterns in tuberculous and sarcoid granulomas: correlations with histopathologic features of the granulomatous response. J Immunol 159, 3034-3043.
    • (1997) J Immunol , vol.159 , pp. 3034-3043
    • Bergeron, A.1    Bonay, M.2    Kambouchner, M.3    Lecossier, D.4    Riquet, M.5    Soler, P.6    Hance, A.7    Tazi, A.8
  • 10
    • 29744468769 scopus 로고    scopus 로고
    • The 'experimental stable' of the BCG vaccine: safety, efficacy, proof, and standards, 1921-1933
    • doi: 10.1016/j.shpsc.2005.09.003
    • Bonah, C (2005). The 'experimental stable' of the BCG vaccine: safety, efficacy, proof, and standards, 1921-1933. Stud Hist Philos Biol Biomed Sci 36, 696-721. doi: 10.1016/j.shpsc.2005.09.003.
    • (2005) Stud Hist Philos Biol Biomed Sci , vol.36 , pp. 696-721
    • Bonah, C.1
  • 11
    • 0035648637 scopus 로고    scopus 로고
    • A faster algorithm for betweenness centrality
    • Brandes, U (2001). A faster algorithm for betweenness centrality. JMath Sociol 25, 163-177.
    • (2001) J Math Sociol , vol.25 , pp. 163-177
    • Brandes, U.1
  • 12
    • 84874613795 scopus 로고    scopus 로고
    • Transcriptional response of bovine monocytederived macrophages after the infection with different Argentinean Mycobacterium bovis isolates
    • doi: 10.1155/2013/458278
    • Caimi, K, Blanco, F, Soria, M, and Bigi, F (2013). Transcriptional response of bovine monocytederived macrophages after the infection with different Argentinean Mycobacterium bovis isolates. Biomed Res Int 2013, 458278. doi: 10.1155/2013/458278.
    • (2013) Biomed Res Int , vol.2013 , pp. 458278
    • Caimi, K.1    Blanco, F.2    Soria, M.3    Bigi, F.4
  • 13
    • 57149088159 scopus 로고
    • Preventive vaccination against tuberculosis with BCG
    • Calmette, A (1931). Preventive vaccination against tuberculosis with BCG. Proc R Soc Med 24, 1481-1490.
    • (1931) Proc R Soc Med , vol.24 , pp. 1481-1490
    • Calmette, A.1
  • 14
    • 84859896621 scopus 로고    scopus 로고
    • Towards understanding how molecular networks evolve in plants
    • doi: 10.1016/j.pbi.2012.01.006
    • Chae, L, Lee, I, Shin, J, and Rhee, SY (2012). Towards understanding how molecular networks evolve in plants. Curr Opin Plant Biol 15, 177-184. doi: 10.1016/j.pbi.2012.01.006.
    • (2012) Curr Opin Plant Biol , vol.15 , pp. 177-184
    • Chae, L.1    Lee, I.2    Shin, J.3    Rhee, S.Y.4
  • 15
    • 0028909199 scopus 로고
    • Characterization of the Mycobacterium tuberculosis phagosome and evidence that phagosomal maturation is inhibited
    • Clemens, DL, and Horwitz, MA (1995). Characterization of the Mycobacterium tuberculosis phagosome and evidence that phagosomal maturation is inhibited. JExpMed 181, 257-270.
    • (1995) J Exp Med , vol.181 , pp. 257-270
    • Clemens, D.L.1    Horwitz, M.A.2
  • 16
    • 33847099559 scopus 로고    scopus 로고
    • Differential expression of NF-kappaB in mycobacteria infected THP-1 affects apoptosis
    • Dhiman, R, Raje, M, and Majumdar, S (2007). Differential expression of NF-kappaB in mycobacteria infected THP-1 affects apoptosis. Biochim Biophys Acta 1770, 649-658.
    • (2007) Biochim Biophys Acta , vol.1770 , pp. 649-658
    • Dhiman, R.1    Raje, M.2    Majumdar, S.3
  • 17
    • 77955077136 scopus 로고    scopus 로고
    • Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis
    • doi: 10.1093/nar/gkqlOl
    • DiChiara, JM, Contreras-Martinez, LM, Livny, J, Smith, D, McDonough, KA, and Belfort, M (2010). Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis. Nucleic Acids Res 38, 4067-4078. doi: 10.1093/nar/gkqlOl.
    • (2010) Nucleic Acids Res , vol.38 , pp. 4067-4078
    • DiChiara, J.M.1    Contreras-Martinez, L.M.2    Livny, J.3    Smith, D.4    McDonough, K.A.5    Belfort, M.6
  • 19
    • 84871811830 scopus 로고    scopus 로고
    • Infection strategies of bacterial and viral pathogens through pathogen-human protein-protein interactions
    • doi: 10.3389/fmicb.2012.00046
    • Durmus Tekir, S, Cakir, T, and Ulgen, KO (2012). Infection strategies of bacterial and viral pathogens through pathogen-human protein-protein interactions. FrontMicrobiol 3, 46. doi: 10.3389/fmicb.2012.00046.
    • (2012) Front Microbiol , vol.3 , pp. 46
    • Durmus Tekir, S.1    Cakir, T.2    Ulgen, K.O.3
  • 20
    • 40349106161 scopus 로고    scopus 로고
    • The landscape of human proteins interacting with viruses and other pathogens
    • doi: 10.1371/journal.ppat.0040032
    • Dyer, MD, Murali, TM, and Sobral, BW (2008). The landscape of human proteins interacting with viruses and other pathogens. PLoSPathog 4, e32. doi: 10.1371/journal.ppat.0040032.
    • (2008) PLoS Pathog , vol.4
    • Dyer, M.D.1    Murali, T.M.2    Sobral, B.W.3
  • 21
    • 78751680631 scopus 로고    scopus 로고
    • Mycobacterium avium uses apoptotic macrophages as tools for spreading
    • doi: 10.1016/j.micpath.2010.12.004
    • Early, J, Fischer, K, and Bermudez, LE (2011). Mycobacterium avium uses apoptotic macrophages as tools for spreading. Microb Pathog 50, 132-139. doi: 10.1016/j.micpath.2010.12.004.
    • (2011) Microb Pathog , vol.50 , pp. 132-139
    • Early, J.1    Fischer, K.2    Bermudez, L.E.3
  • 22
    • 0033204106 scopus 로고    scopus 로고
    • On power-law relationships of the internet topology
    • Faloutsos, M, Faloutsos, P, and Faloutsos, C (1999). On power-law relationships of the internet topology. Comp Comm Rev 29, 251-262.
    • (1999) Comp Comm Rev , vol.29 , pp. 251-262
    • Faloutsos, M.1    Faloutsos, P.2    Faloutsos, C.3
  • 23
    • 0027360333 scopus 로고
    • An essential role for interferon gamma in resistance to Mycobacterium tuberculosis infection
    • Flynn, JL, Chan, J, Triebold, KJ, Dalton, DK, Stewart, TA, and Bloom, BR (1993). An essential role for interferon gamma in resistance to Mycobacterium tuberculosis infection. JExpMed 178, 2249-2254.
    • (1993) J Exp Med , vol.178 , pp. 2249-2254
    • Flynn, J.L.1    Chan, J.2    Triebold, K.J.3    Dalton, D.K.4    Stewart, T.A.5    Bloom, B.R.6
  • 24
    • 0029078676 scopus 로고
    • IL-12 increases resistance of BALB/c mice to Mycobacterium tuberculosis infection
    • Flynn, JL, Goldstein, MM, Triebold, KJ, Sypek, J, Wolf, S, and Bloom, BR (1995). IL-12 increases resistance of BALB/c mice to Mycobacterium tuberculosis infection. J Immunol 155, 2515-2524.
    • (1995) J Immunol , vol.155 , pp. 2515-2524
    • Flynn, J.L.1    Goldstein, M.M.2    Triebold, K.J.3    Sypek, J.4    Wolf, S.5    Bloom, B.R.6
  • 27
    • 84856688022 scopus 로고    scopus 로고
    • Host-pathogen coevolution in human tuberculosis
    • doi: 10.1098/rstb.2011.0316
    • Gagneux, S (2012). Host-pathogen coevolution in human tuberculosis. Philos Trans R Soc LondB BiolSci 367, 850-859. doi: 10.1098/rstb.2011.0316.
    • (2012) Philos Trans R Soc Lond B Biol Sci , vol.367 , pp. 850-859
    • Gagneux, S.1
  • 28
    • 84857408156 scopus 로고    scopus 로고
    • A small world of weak ties provides optimal global integration of self-similar modules in functional brain networks
    • doi: 10.1073/pnas. 1106612109
    • Gallos, LK, Makse, HA, and Sigman, M (2012a). A small world of weak ties provides optimal global integration of self-similar modules in functional brain networks. Proc Natl Acad Sci USA 109,2825-2830. doi: 10.1073/pnas. 1106612109.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 2825-2830
    • Gallos, L.K.1    Makse, H.A.2    Sigman, M.3
  • 29
    • 84866387546 scopus 로고    scopus 로고
    • The conundrum of functional brain networks: small-world efficiency or fractal modularity
    • doi: 10.3389/fphys.2012.00123
    • Gallos, LK, Sigman, M, and Makse, HA (2012b). The conundrum of functional brain networks: small-world efficiency or fractal modularity. Front Physiol 3, 123. doi: 10.3389/fphys.2012.00123.
    • (2012) Front Physiol , vol.3 , pp. 123
    • Gallos, L.K.1    Sigman, M.2    Makse, H.A.3
  • 33
    • 16344381521 scopus 로고    scopus 로고
    • Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
    • doi: 10.1093/molbev/msi072
    • Hahn, MW, and Kern, AD (2005). Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. MolBiolEvol 22, 803-806. doi: 10.1093/molbev/msi072.
    • (2005) Mol Biol Evol , vol.22 , pp. 803-806
    • Hahn, M.W.1    Kern, A.D.2
  • 34
    • 0030025636 scopus 로고    scopus 로고
    • Evidence for occurrence of the ESAT-6 protein mMycobacterium tuberculosis and virulent Mycobacterium bovis and for its absence mMycobacterium bovis BCG
    • Harboe, M, Oettinger, T, Wiker, HG, Rosenkrands, I, and Andersen, P (1996). Evidence for occurrence of the ESAT-6 protein mMycobacterium tuberculosis and virulent Mycobacterium bovis and for its absence mMycobacterium bovis BCG. InfectImmun 64, 16-22.
    • (1996) Infect Immun , vol.64 , pp. 16-22
    • Harboe, M.1    Oettinger, T.2    Wiker, H.G.3    Rosenkrands, I.4    Andersen, P.5
  • 35
    • 77949550080 scopus 로고    scopus 로고
    • Regulation of antigen presentation by Mycobacterium tuberculosis: a role for Toll-like receptors
    • doi: 10.1038/nrmicro2321
    • Harding, CV, and Boom, WH (2010). Regulation of antigen presentation by Mycobacterium tuberculosis: a role for Toll-like receptors. Nat Rev Microbiol 8, 296-307. doi: 10.1038/nrmicro2321.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 296-307
    • Harding, C.V.1    Boom, W.H.2
  • 36
    • 26244436989 scopus 로고    scopus 로고
    • Mycobacterial manipulation of the host cell
    • doi: 10.1016/j.femsre.2005.04.013
    • Hestvik, AL, Hmama, Z, and Av-Gay, Y (2005). Mycobacterial manipulation of the host cell. FEMS Microbiol Rev 29, 1041-1050. doi: 10.1016/j.femsre.2005.04.013.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 1041-1050
    • Hestvik, A.L.1    Hmama, Z.2    Av-Gay, Y.3
  • 37
    • 33645823677 scopus 로고    scopus 로고
    • A new summarization method for Affymetrix probe level data
    • doi: 10.1093/bioinformatics/btl033
    • Hochreiter, S, Clevert, DA, and Obermayer, K (2006). A new summarization method for Affymetrix probe level data. Bioinformatics 22, 943-949. doi: 10.1093/bioinformatics/btl033.
    • (2006) Bioinformatics , vol.22 , pp. 943-949
    • Hochreiter, S.1    Clevert, D.A.2    Obermayer, K.3
  • 38
    • 80052345448 scopus 로고    scopus 로고
    • A delicate dance: host response to mycobacteria
    • doi: 10.1016/j.coi.2011.06.002
    • Huynh, KK, Joshi, SA, and Brown, EJ (2011). A delicate dance: host response to mycobacteria. Curr OpinImmunol23, 464-472. doi: 10.1016/j.coi.2011.06.002.
    • (2011) Curr Opin Immunol , vol.23 , pp. 464-472
    • Huynh, K.K.1    Joshi, S.A.2    Brown, E.J.3
  • 39
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • doi: 10.1038/msb.2011.99
    • Ideker, T, and Krogan, NJ (2012). Differential network biology. MolSystBiol 8, 565. doi: 10.1038/msb.2011.99.
    • (2012) Mol Syst Biol , vol.8 , pp. 565
    • Ideker, T.1    Krogan, N.J.2
  • 40
    • 0027742263 scopus 로고
    • Reactivities of 20 anti-human monoclonal antibodies with leucocytes from ten different animal species
    • Jacobsen, CN, Aasted, B, Broe, MK, and Petersen, JL (1993). Reactivities of 20 anti-human monoclonal antibodies with leucocytes from ten different animal species. Vet Immunol Immunopathol 39, 461-466.
    • (1993) Vet Immunol Immunopathol , vol.39 , pp. 461-466
    • Jacobsen, C.N.1    Aasted, B.2    Broe, M.K.3    Petersen, J.L.4
  • 41
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • doi: 10.1038/35036627
    • Jeong, H, Tombor, B, Albert, R, Oltvai, ZN, and Barabasi, AL (2000). The large-scale organization of metabolic networks. Nature 407, 651-654. doi: 10.1038/35036627.
    • (2000) Nature , vol.407 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 43
    • 84863213626 scopus 로고    scopus 로고
    • Strain specific transcriptional response in Mycobacterium tuberculosis infected macrophages
    • doi: 10.1186/1478-811X-10-2
    • Koo, MS, Subbian, S, and Kaplan, G (2012). Strain specific transcriptional response in Mycobacterium tuberculosis infected macrophages. Cell Commun Signal 10, 2. doi: 10.1186/1478-811X-10-2.
    • (2012) Cell Commun Signal , vol.10 , pp. 2
    • Koo, M.S.1    Subbian, S.2    Kaplan, G.3
  • 44
    • 0036224904 scopus 로고    scopus 로고
    • The small world in biophysical systems structural properties of glycolysis and the TCA cycle in Escherichia coli
    • Krajnc, B, and Marhl, M (2002). The small world in biophysical systems structural properties of glycolysis and the TCA cycle in Escherichia coli. CellMol Biol Lett 7, 129-131.
    • (2002) Cell Mol Biol Lett , vol.7 , pp. 129-131
    • Krajnc, B.1    Marhl, M.2
  • 47
    • 77956216718 scopus 로고    scopus 로고
    • Understanding latent tuberculosis: a moving target
    • doi: 10.4049/jimmunol.0903856
    • Lin, PL, and Flynn, JL (2010). Understanding latent tuberculosis: a moving target. J Immunol 185, 15-22. doi: 10.4049/jimmunol.0903856.
    • (2010) J Immunol , vol.185 , pp. 15-22
    • Lin, P.L.1    Flynn, J.L.2
  • 48
    • 67549125652 scopus 로고    scopus 로고
    • BCG vaccines: their mechanisms of attenuation and impact on safety and protective efficacy
    • Liu, J, Tran, V, Leung, AS, Alexander, DC, and Zhu, B (2009). BCG vaccines: their mechanisms of attenuation and impact on safety and protective efficacy. Hum Vaccin 5, 70-78.
    • (2009) Hum Vaccin , vol.5 , pp. 70-78
    • Liu, J.1    Tran, V.2    Leung, A.S.3    Alexander, D.C.4    Zhu, B.5
  • 50
    • 0037316239 scopus 로고    scopus 로고
    • Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
    • Ma, H, and Zeng, AP (2003). Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19, 270-277.
    • (2003) Bioinformatics , vol.19 , pp. 270-277
    • Ma, H.1    Zeng, A.P.2
  • 52
    • 0029920827 scopus 로고    scopus 로고
    • Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis
    • Mahairas, GG, Sabo, PJ, Hickey, MJ, Singh, DC, and Stover, CK (1996). Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis. JBacteriol 178, 1274-1282.
    • (1996) J Bacteriol , vol.178 , pp. 1274-1282
    • Mahairas, G.G.1    Sabo, P.J.2    Hickey, M.J.3    Singh, D.C.4    Stover, C.K.5
  • 53
    • 79951919797 scopus 로고    scopus 로고
    • Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation
    • doi: 10.1371/journal.pone.0014673
    • McDermott, JE, Archuleta, M, Thrall, BD, Adkins, JN, and Waters, KM (2011). Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation. PLoS ONE 6, el4673. doi: 10.1371/journal.pone.0014673.
    • (2011) PLoS ONE , vol.6
    • McDermott, J.E.1    Archuleta, M.2    Thrall, B.D.3    Adkins, J.N.4    Waters, K.M.5
  • 54
    • 34447093997 scopus 로고    scopus 로고
    • The immunology of bovine tuberculosis and progression toward improved disease control strategies
    • doi:S0264-410X(07)00191-0 [pii] 10.1016/j.vaccine.2007.02.037
    • McNair, J, Welsh, MD, and Pollock, JM (2007). The immunology of bovine tuberculosis and progression toward improved disease control strategies. Vaccine 25, 5504-5511. doi: S0264-410X(07)00191-0 [pii] 10.1016/j.vaccine.2007.02.037.
    • (2007) Vaccine , vol.25 , pp. 5504-5511
    • McNair, J.1    Welsh, M.D.2    Pollock, J.M.3
  • 55
    • 33748169434 scopus 로고    scopus 로고
    • The Oscar-worthy role of Myc in apoptosis
    • 5/0/16, doi: 10.1016/j.semcancer.2006.07.011
    • Meyer, N, Kim, SS, and Penn, LZ (2006). The Oscar-worthy role of Myc in apoptosis. Semin Cancer 5/0/16,275-287. doi: 10.1016/j.semcancer.2006.07.011.
    • (2006) Semin Cancer , pp. 275-287
    • Meyer, N.1    Kim, S.S.2    Penn, L.Z.3
  • 56
    • 41449118699 scopus 로고    scopus 로고
    • The transcription factor EGR1 controls both the proliferation and localization of hematopoietic stem cells
    • doi: 10.1016/j.stem.2008.01.015
    • Min, JJVI, Pietramaggiori, G, Kim, FS, Passegue, E, Stevenson, KE, and Wagers, AJ (2008). The transcription factor EGR1 controls both the proliferation and localization of hematopoietic stem cells. Cell Stem Cell!, 380-391. doi: 10.1016/j.stem.2008.01.015.
    • (2008) Cell Stem Cell! , pp. 380-391
    • Min, J.J.V.I.1    Pietramaggiori, G.2    Kim, F.S.3    Passegue, E.4    Stevenson, K.E.5    Wagers, A.J.6
  • 59
    • 84855514952 scopus 로고    scopus 로고
    • Stable extracellular RNA fragments of Mycobacterium tuberculosis induce early apoptosis in human monocytes via a caspase-8 dependent mechanism
    • doi: 10.1371/journal.pone.0029970
    • Obregon-Henao, A, Duque-Correa, MA, Rojas, M, Garcia, LF, Brennan, PJ, Ortiz, BL, and Belisle, JT (2012). Stable extracellular RNA fragments of Mycobacterium tuberculosis induce early apoptosis in human monocytes via a caspase-8 dependent mechanism. PLoS ONE 7, e29970. doi: 10.1371/journal.pone.0029970.
    • (2012) PLoS ONE , vol.7
    • Obregon-Henao, A.1    Duque-Correa, M.A.2    Rojas, M.3    Garcia, L.F.4    Brennan, P.J.5    Ortiz, B.L.6    Belisle, J.T.7
  • 60
    • 0032879222 scopus 로고    scopus 로고
    • Development of the Mycobacterium bovis BCG vaccine: review of the historical and biochemical evidence for a genealogical tree
    • doi: 10.1054/tuld. 1999.0206
    • Oettinger, T, Jorgensen, M, Ladefoged, A, Haslov, K, and Andersen, P (1999). Development of the Mycobacterium bovis BCG vaccine: review of the historical and biochemical evidence for a genealogical tree. Tuber LungDis 79, 243-250. doi: 10.1054/tuld. 1999.0206.
    • (1999) Tuber Lung Dis , vol.79 , pp. 243-250
    • Oettinger, T.1    Jorgensen, M.2    Ladefoged, A.3    Haslov, K.4    Andersen, P.5
  • 61
    • 84867198092 scopus 로고    scopus 로고
    • The knowns and unknowns of the immunopathogenesis of tuberculosis
    • doi: 10.5588/ijtld. 12.0479
    • Ottenhoff, TH (2012). The knowns and unknowns of the immunopathogenesis of tuberculosis. IntJ Tuberc Lung Dis 16, 1424-1432. doi: 10.5588/ijtld. 12.0479.
    • (2012) Int J Tuberc Lung Dis , vol.16 , pp. 1424-1432
    • Ottenhoff, T.H.1
  • 62
    • 44649128524 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis and the macrophage: maintaining a balance
    • doi:S1931-3128(08)00154-6 [pii] 10.1016/j.chom.2008.05.006
    • Pieters, J (2008). Mycobacterium tuberculosis and the macrophage: maintaining a balance. Cell Host Microbe 3, 399-407. doi: S1931-3128(08)00154-6 [pii] 10.1016/j.chom.2008.05.006.
    • (2008) Cell Host Microbe , vol.3 , pp. 399-407
    • Pieters, J.1
  • 63
    • 0036490332 scopus 로고    scopus 로고
    • Mycobacterium bovis infection and tuberculosis in cattle
    • Pollock, JM, and Neill, SD (2002). Mycobacterium bovis infection and tuberculosis in cattle. VetJ 163,115-127.
    • (2002) Vet J , vol.163 , pp. 115-127
    • Pollock, J.M.1    Neill, S.D.2
  • 64
    • 79953274965 scopus 로고    scopus 로고
    • Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages
    • doi: 10.1371/journal.ppat. 1001307
    • Portevin, D, Gagneux, S, Comas, I, and Young, D (2011). Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages. PLoSPathog 7, el001307. doi: 10.1371/journal.ppat. 1001307.
    • (2011) PLoS Pathog , vol.7
    • Portevin, D.1    Gagneux, S.2    Comas, I.3    Young, D.4
  • 65
    • 33947172058 scopus 로고    scopus 로고
    • Life and death in the granuloma: immunopathology of tuberculosis
    • doi: 10.1038/sj.icb.7100027
    • Saunders, BM, and Britton, WJ (2007). Life and death in the granuloma: immunopathology of tuberculosis. Immunol CellBiol 85, 103-111. doi: 10.1038/sj.icb.7100027.
    • (2007) Immunol Cell Biol , vol.85 , pp. 103-111
    • Saunders, B.M.1    Britton, W.J.2
  • 66
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • doi: 10.1101/gr.l239303
    • Shannon, P, Markiel, A, Ozier, O, Baliga, NS, Wang, JT, Ramage, D, Amin, N, Schwikowski, B, and Ideker, T (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13,2498-2504. doi: 10.1101/gr.l239303.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 68
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3. doi: 10.2202/1544-6115.1027
    • Smyth, GK (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl GenetMolBiol 3, Article3. doi: 10.2202/1544-6115.1027.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 69
    • 0035826155 scopus 로고    scopus 로고
    • Exploring complex networks
    • doi: 10.1038/35065725
    • Strogatz, SH (2001). Exploring complex networks. Nature 410, 268-276. doi: 10.1038/35065725.
    • (2001) Nature , vol.410 , pp. 268-276
    • Strogatz, S.H.1
  • 70
    • 36448929060 scopus 로고    scopus 로고
    • I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data
    • doi: 10.1093/bioinformatics/btm478
    • Talloen, W, Clevert, DA, Hochreiter, S, Amaratunga, D, Bijnens, L, Kass, S, and Gohlmann, HW (2007). I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data. Bioinformatics 23, 2897-2902. doi: 10.1093/bioinformatics/btm478.
    • (2007) Bioinformatics , vol.23 , pp. 2897-2902
    • Talloen, W.1    Clevert, D.A.2    Hochreiter, S.3    Amaratunga, D.4    Bijnens, L.5    Kass, S.6    Gohlmann, H.W.7
  • 71
    • 79961009047 scopus 로고    scopus 로고
    • Transcriptional profiling of immune genes in bovine monocyte-derived macrophages exposed to bacterial antigens
    • doi: 10.1016/j.vetimm.2010.12.002
    • Taraktsoglou, M, Szalabska, U, Magee, DA, Browne, JA, Sweeney, T, Gormley, E, and MacHugh, DE (2011). Transcriptional profiling of immune genes in bovine monocyte-derived macrophages exposed to bacterial antigens. Vet Immunol Immunopathol 140, 130-139. doi: 10.1016/j.vetimm.2010.12.002.
    • (2011) Vet Immunol Immunopathol , vol.140 , pp. 130-139
    • Taraktsoglou, M.1    Szalabska, U.2    Magee, D.A.3    Browne, J.A.4    Sweeney, T.5    Gormley, E.6    MacHugh, D.E.7
  • 73
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of'small-world' networks
    • doi: 10.1038/30918
    • Watts, DJ, and Strogatz, SH (1998). Collective dynamics of'small-world' networks. Nature 393, 440-442. doi: 10.1038/30918.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 74
    • 33646119171 scopus 로고    scopus 로고
    • Differences of gene expression in bovine alveolar macrophages infected with virulent and attenuated isogenic strains of Mycobacterium bovis
    • doi: 10.1016/j.intimp.2006.01.003
    • Wedlock, DN, Kawakami, RP, Koach, J, Buddie, BM, and Collins, DM (2006). Differences of gene expression in bovine alveolar macrophages infected with virulent and attenuated isogenic strains of Mycobacterium bovis. IntImmunopharmacol 6, 957-961. doi: 10.1016/j.intimp.2006.01.003.
    • (2006) Int Immunopharmacol , vol.6 , pp. 957-961
    • Wedlock, D.N.1    Kawakami, R.P.2    Koach, J.3    Buddie, B.M.4    Collins, D.M.5
  • 75
    • 84865155546 scopus 로고    scopus 로고
    • Dual RNA-seq of pathogen and host
    • doi: 10.1038/nrmicro2852
    • Westermann, AJ, Gorski, SA, and Vogel, J (2012). Dual RNA-seq of pathogen and host. Nat Rev Microbiol 10, 618-630. doi: 10.1038/nrmicro2852.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 618-630
    • Westermann, A.J.1    Gorski, S.A.2    Vogel, J.3
  • 76
    • 0036899166 scopus 로고    scopus 로고
    • Biological and biomedical implications of the co-evolution of pathogens and their hosts
    • doi: 10.1038/ngl202-569
    • Woolhouse, ME, Webster, JP, Domingo, E, Charlesworth, B, and Levin, BR (2002). Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nat Genet 32, 569-577. doi: 10.1038/ngl202-569.
    • (2002) Nat Genet , vol.32 , pp. 569-577
    • Woolhouse, M.E.1    Webster, J.P.2    Domingo, E.3    Charlesworth, B.4    Levin, B.R.5
  • 77
    • 0442307969 scopus 로고    scopus 로고
    • IkappaB kinases: key regulators of the NF-kappaB pathway
    • doi: 10.1016/j.tibs.2003.12.003
    • Yamamoto, Y, and Gaynor, RB (2004). IkappaB kinases: key regulators of the NF-kappaB pathway. TrendsBiochem Sci 29, 72-79. doi: 10.1016/j.tibs.2003.12.003.
    • (2004) Trends Biochem Sci , vol.29 , pp. 72-79
    • Yamamoto, Y.1    Gaynor, R.B.2
  • 79
    • 80055087050 scopus 로고    scopus 로고
    • A role for c-Myc in regulating anti-mycobacterial responses
    • doi: 10.1073/pnas.l 104892108
    • Yim, HC, Li, JC, Pong, JC, and Lau, AS (2011). A role for c-Myc in regulating anti-mycobacterial responses. Proc NatlAcadSci USA 108, 17749-17754. doi: 10.1073/pnas.l 104892108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 17749-17754
    • Yim, H.C.1    Li, J.C.2    Pong, J.C.3    Lau, A.S.4
  • 80
    • 2442477788 scopus 로고    scopus 로고
    • Genomic analysis of essentiality within protein networks
    • doi: 10.1016/j.tig.2004.04.008
    • Yu, H, Greenbaum, D, Xin Lu, H, Zhu, X, and Gerstein, M (2004). Genomic analysis of essentiality within protein networks. Trends Genet 20, 227-231. doi: 10.1016/j.tig.2004.04.008.
    • (2004) Trends Genet , vol.20 , pp. 227-231
    • Yu, H.1    Greenbaum, D.2    Xin Lu, H.3    Zhu, X.4    Gerstein, M.5
  • 81
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
    • doi: 10.1371/journal.pcbi.0030059
    • Yu, H, Kim, PM, Sprecher, E, Trifonov, V, and Gerstein, M (2007). The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol3, e59. doi: 10.1371/journal.pcbi.0030059.
    • (2007) PLoS Comput Biol , vol.3
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 82
    • 84873663406 scopus 로고    scopus 로고
    • A newly identified microRNA, mmu-miR-7578, functions as a negative regulator on inflammatory cytokines tumor necrosis factor-alpha and interleukin-6 via targeting Egrl in vivo
    • doi: 10.1074/jbc.M112.351197
    • Zhang, J, Xie, S, Ma, W, Teng, Y, Tian, Y, Huang, X, and Zhang, Y (2013). A newly identified microRNA, mmu-miR-7578, functions as a negative regulator on inflammatory cytokines tumor necrosis factor-alpha and interleukin-6 via targeting Egrl in vivo. JBiol Chem 288, 4310-4320. doi: 10.1074/jbc.M112.351197.
    • (2013) J Biol Chem , vol.288 , pp. 4310-4320
    • Zhang, J.1    Xie, S.2    Ma, W.3    Teng, Y.4    Tian, Y.5    Huang, X.6    Zhang, Y.7
  • 83
    • 79251479382 scopus 로고    scopus 로고
    • The roles of pathogen small RNAs
    • doi: 10.1002/jcp.22483
    • Zhou, Y, and Xie, J (2011). The roles of pathogen small RNAs. JCellPhysiol 226, 968-973. doi: 10.1002/jcp.22483.
    • (2011) J Cell Physiol , vol.226 , pp. 968-973
    • Zhou, Y.1    Xie, J.2


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