-
1
-
-
18644378769
-
Gamma delta T cells respond directly to pathogen-associated molecular patterns
-
J.F. Hedges, K.J. Lubick, and M.A. Jutila Gamma delta T cells respond directly to pathogen-associated molecular patterns J. Immunol. 174 2005 6045 6053
-
(2005)
J. Immunol.
, vol.174
, pp. 6045-6053
-
-
Hedges, J.F.1
Lubick, K.J.2
Jutila, M.A.3
-
2
-
-
67650357977
-
Global changes in gene expression and synergistic interactions induced by TLR9 and TLR3
-
D. Tross, L. Petrenko, S. Klaschik, Q. Zhu, and D.M. Klinman Global changes in gene expression and synergistic interactions induced by TLR9 and TLR3 Mol. Immunol. 46 2009 2557 2564
-
(2009)
Mol. Immunol.
, vol.46
, pp. 2557-2564
-
-
Tross, D.1
Petrenko, L.2
Klaschik, S.3
Zhu, Q.4
Klinman, D.M.5
-
3
-
-
40749154928
-
During infection of epithelial cells, Salmonella enterica serovar typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems
-
I. Hautefort, A. Thompson, S. Eriksson-Ygberg, M.L. Parker, S. Lucchini, V. Danino, R.J. Bongaerts, N. Ahmad, M. Rhen, and J.C. Hinton During infection of epithelial cells, Salmonella enterica serovar typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems Cell. Microbiol. 10 2008 958 984
-
(2008)
Cell. Microbiol.
, vol.10
, pp. 958-984
-
-
Hautefort, I.1
Thompson, A.2
Eriksson-Ygberg, S.3
Parker, M.L.4
Lucchini, S.5
Danino, V.6
Bongaerts, R.J.7
Ahmad, N.8
Rhen, M.9
Hinton, J.C.10
-
4
-
-
29144515366
-
Progression of primary pneumonic plague: A mouse model of infection, pathology, and bacterial transcriptional activity
-
W.W. Lathem, S.D. Crosby, V.L. Miller, and W.E. Goldman Progression of primary pneumonic plague: A mouse model of infection, pathology, and bacterial transcriptional activity Proc. Natl. Acad. Sci. USA 102 2005 17786 17791
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17786-17791
-
-
Lathem, W.W.1
Crosby, S.D.2
Miller, V.L.3
Goldman, W.E.4
-
5
-
-
67649268395
-
The Listeria transcriptional landscape from saprophytism to virulence
-
A. Toledo-Arana, O. Dussurget, G. Nikitas, N. Sesto, H. Guet-Revillet, D. Balestrino, E. Loh, J. Gripenland, and T.P. Tiensuu The Listeria transcriptional landscape from saprophytism to virulence Nature 459 2009 950 956
-
(2009)
Nature
, vol.459
, pp. 950-956
-
-
Toledo-Arana, A.1
Dussurget, O.2
Nikitas, G.3
Sesto, N.4
Guet-Revillet, H.5
Balestrino, D.6
Loh, E.7
Gripenland, J.8
Tiensuu, T.P.9
-
6
-
-
84875592570
-
Simultaneous RNA-Seq analysis of a mixed transcriptome of rice and blast fungus interaction
-
Y. Kawahara, Y. Oono, H. Kanamori, T. Matsumoto, T. Itoh, and E. Minami Simultaneous RNA-Seq analysis of a mixed transcriptome of rice and blast fungus interaction PLoS One 7 2012 e49423
-
(2012)
PLoS One
, vol.7
, pp. 49423
-
-
Kawahara, Y.1
Oono, Y.2
Kanamori, H.3
Matsumoto, T.4
Itoh, T.5
Minami, E.6
-
7
-
-
84865175959
-
An interspecies regulatory network inferred from simultaneous RNA-Seq of Candida albicans invading innate immune cells
-
L. Tierney, J. Linde, S. Muller, S. Brunke, J.C. Molina, B. Hube, U. Schöck, R. Guthke, and K. Kuchler An interspecies regulatory network inferred from simultaneous RNA-Seq of Candida albicans invading innate immune cells Front. Microbiol. 3 2012 85
-
(2012)
Front. Microbiol.
, vol.3
, pp. 85
-
-
Tierney, L.1
Linde, J.2
Muller, S.3
Brunke, S.4
Molina, J.C.5
Hube, B.6
Schöck, U.7
Guthke, R.8
Kuchler, K.9
-
9
-
-
77957689489
-
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
-
S. He, O. Wurtzel, K. Singh, J.L. Froula, S. Yilmaz, S.G. Tringe, Z. Wang, F. Chen, E.A. Lindquist, R. Sorek, and P. Hugenholtz Validation of two ribosomal RNA removal methods for microbial metatranscriptomics Nat. Methods 7 2010 807 812
-
(2010)
Nat. Methods
, vol.7
, pp. 807-812
-
-
He, S.1
Wurtzel, O.2
Singh, K.3
Froula, J.L.4
Yilmaz, S.5
Tringe, S.G.6
Wang, Z.7
Chen, F.8
Lindquist, E.A.9
Sorek, R.10
Hugenholtz, P.11
-
11
-
-
84858979078
-
The SEQanswers wiki: A wiki database of tools for high-throughput sequencing analysis
-
J.W. Li, K. Robison, M. Martin, A. Sjodin, B. Usadel, M. Young, E.C. Olivares, and D.M. Bolser The SEQanswers wiki: A wiki database of tools for high-throughput sequencing analysis Nucleic Acids Res. 40 2012 D1313 D1317
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Li, J.W.1
Robison, K.2
Martin, M.3
Sjodin, A.4
Usadel, B.5
Young, M.6
Olivares, E.C.7
Bolser, D.M.8
-
12
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
J.Z. Levin, M. Yassour, X. Adiconis, C. Nusbaum, D.A. Thompson, N. Friedman, A. Gnirke, and A. Regev Comprehensive comparative analysis of strand-specific RNA sequencing methods Nat. Methods 7 2010 709 715
-
(2010)
Nat. Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
Friedman, N.6
Gnirke, A.7
Regev, A.8
-
13
-
-
70249111091
-
Targeted capture and massively parallel sequencing of 12 human exomes
-
S.B. Ng, E.H. Turner, P.D. Robertson, S.D. Flygare, A.W. Bigham, C. Lee, T. Shaffer, M. Wong, A. Bhattacharjee, E.E. Eichler, M. Barnshad, D.A. Nickerson, and J. Shendure Targeted capture and massively parallel sequencing of 12 human exomes Nature 461 2009 272 276
-
(2009)
Nature
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
Turner, E.H.2
Robertson, P.D.3
Flygare, S.D.4
Bigham, A.W.5
Lee, C.6
Shaffer, T.7
Wong, M.8
Bhattacharjee, A.9
Eichler, E.E.10
Barnshad, M.11
Nickerson, D.A.12
Shendure, J.13
-
14
-
-
73149123343
-
Genetic diagnosis by whole exome capture and massively parallel DNA sequencing
-
M. Choi, U.I. Scholl, W. Ji, T. Liu, I.R. Tikhonova, P. Zumbo, A. Nayir, A. Bakkaloǧlu, S. Ozen, S. Sanjad, C. Nelson-Williams, A. Farhi, S. Mane, and R.P. Lifton Genetic diagnosis by whole exome capture and massively parallel DNA sequencing Proc. Natl. Acad. Sci. USA 106 2009 19096 19101
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 19096-19101
-
-
Choi, M.1
Scholl, U.I.2
Ji, W.3
Liu, T.4
Tikhonova, I.R.5
Zumbo, P.6
Nayir, A.7
Bakkaloǧlu, A.8
Ozen, S.9
Sanjad, S.10
Nelson-Williams, C.11
Farhi, A.12
Mane, S.13
Lifton, R.P.14
-
15
-
-
80053355174
-
Comprehensive comparison of three commercial human whole-exome capture platforms
-
Asan, Y. Xu, H. Jiang, C. Tyler-Smith, Y. Xue, T. Jiang, J. Wang, M. Wu, X. Liu, G. Tian, J. Wang, J. Wang, H. Yang, and X. Zhang Comprehensive comparison of three commercial human whole-exome capture platforms Genome Biol. 12 2011 R95
-
(2011)
Genome Biol.
, vol.12
, pp. 95
-
-
Asan1
Xu, Y.2
Jiang, H.3
Tyler-Smith, C.4
Xue, Y.5
Jiang, T.6
Wang, J.7
Wu, M.8
Liu, X.9
Tian, G.10
Wang, J.11
Wang, J.12
Yang, H.13
Zhang, X.14
-
16
-
-
84869238905
-
Rift Valley fever virus strain MP-12 enters mammalian host cells via caveola-mediated endocytosis
-
B. Harmon, B.R. Schudel, D. Maar, C. Kozina, T. Ikegami, C.T. Tseng, and O.A. Negrete Rift Valley fever virus strain MP-12 enters mammalian host cells via caveola-mediated endocytosis J. Virol. 86 2012 12954 12970
-
(2012)
J. Virol.
, vol.86
, pp. 12954-12970
-
-
Harmon, B.1
Schudel, B.R.2
Maar, D.3
Kozina, C.4
Ikegami, T.5
Tseng, C.T.6
Negrete, O.A.7
-
17
-
-
9744236513
-
Differential virulence of West Nile strains for American crows
-
A.C. Brault, S.A. Langevin, R.A. Bowen, N.A. Panella, B.J. Biggerstaff, B.R. Miller, and N. Komar Differential virulence of West Nile strains for American crows Emerging Infect. Dis. 10 2004 2161 2168
-
(2004)
Emerging Infect. Dis.
, vol.10
, pp. 2161-2168
-
-
Brault, A.C.1
Langevin, S.A.2
Bowen, R.A.3
Panella, N.A.4
Biggerstaff, B.J.5
Miller, B.R.6
Komar, N.7
-
18
-
-
15044359726
-
Efficacy of the live attenuated Francisella tularensis vaccine (LVS) in a murine model of disease
-
M. Green, G. Choules, D. Rogers, and R.W. Titball Efficacy of the live attenuated Francisella tularensis vaccine (LVS) in a murine model of disease Vaccine 23 2005 2680 2686
-
(2005)
Vaccine
, vol.23
, pp. 2680-2686
-
-
Green, M.1
Choules, G.2
Rogers, D.3
Titball, R.W.4
-
19
-
-
77953278764
-
Simultaneous detection of CDC category "a" DNA and RNA bioterrorism agents by use of multiplex PCR and RT-PCR enzyme hybridization assays
-
J. He, A.J. Kraft, J. Fan, M. Van Dyke, L. Wang, M.E. Bose, M. Khanna, J.A. Metallo, and K.J. Henrickson Simultaneous detection of CDC category "A" DNA and RNA bioterrorism agents by use of multiplex PCR and RT-PCR enzyme hybridization assays Viruses 1 2009 441 459
-
(2009)
Viruses
, vol.1
, pp. 441-459
-
-
He, J.1
Kraft, A.J.2
Fan, J.3
Van Dyke, M.4
Wang, L.5
Bose, M.E.6
Khanna, M.7
Metallo, J.A.8
Henrickson, K.J.9
-
20
-
-
84871349680
-
CDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-Seq applications
-
V.A. VanderNoot, S.A. Langevin, O.D. Solberg, P.D. Lane, D.J. Curtis, Z.W. Bent, K.P. Williams, K.D. Patel, J.S. Schoeniger, S.S. Branda, and T.W. Lane CDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-Seq applications BioTechniques 53 2012 373 380
-
(2012)
BioTechniques
, vol.53
, pp. 373-380
-
-
Vandernoot, V.A.1
Langevin, S.A.2
Solberg, O.D.3
Lane, P.D.4
Curtis, D.J.5
Bent, Z.W.6
Williams, K.P.7
Patel, K.D.8
Schoeniger, J.S.9
Branda, S.S.10
Lane, T.W.11
-
21
-
-
33746889477
-
Size exclusion chromatography of microliter volumes for on-line use in low-pressure microfluidic systems
-
G. Chirica, J. Lachmann, and J. Chan Size exclusion chromatography of microliter volumes for on-line use in low-pressure microfluidic systems Anal. Chem. 78 2006 5362 5368
-
(2006)
Anal. Chem.
, vol.78
, pp. 5362-5368
-
-
Chirica, G.1
Lachmann, J.2
Chan, J.3
-
22
-
-
84863507534
-
Geneious basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
-
M. Kearse, R. Moir, A. Wilson, S. Stones-Havas, M. Cheung, S. Sturrock, S. Buxton, A. Cooper, S. Markowitz, C. Duran, T. Thierer, B. Ashton, P. Meinties, and A. Drummond Geneious basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data Bioinformatics 28 2012 1647 1649
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
Sturrock, S.6
Buxton, S.7
Cooper, A.8
Markowitz, S.9
Duran, C.10
Thierer, T.11
Ashton, B.12
Meinties, P.13
Drummond, A.14
-
23
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
B. Langmead, and S.L. Salzberg Fast gapped-read alignment with Bowtie 2 Nat. Methods 9 2012 357 359
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
24
-
-
79952709611
-
Improving RNA-Seq expression estimates by correcting for fragment bias
-
A. Roberts, C. Trapnell, J. Donaghey, J.L. Rinn, and L. Pachter Improving RNA-Seq expression estimates by correcting for fragment bias Genome Biol. 12 2011 R22
-
(2011)
Genome Biol.
, vol.12
, pp. 22
-
-
Roberts, A.1
Trapnell, C.2
Donaghey, J.3
Rinn, J.L.4
Pachter, L.5
-
25
-
-
80455126001
-
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems
-
A.E. Minoche, J.C. Dohm, and H. Himmelbauer Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems Genome Biol. 12 2011 R112
-
(2011)
Genome Biol.
, vol.12
, pp. 112
-
-
Minoche, A.E.1
Dohm, J.C.2
Himmelbauer, H.3
-
26
-
-
79960852002
-
Addressing challenges in the production and analysis of Illumina sequencing data
-
M. Kircher, P. Heyn, and J. Kelso Addressing challenges in the production and analysis of Illumina sequencing data BMC Genomics 12 2011 382
-
(2011)
BMC Genomics
, vol.12
, pp. 382
-
-
Kircher, M.1
Heyn, P.2
Kelso, J.3
-
27
-
-
84855295457
-
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
-
M. Kircher, S. Sawyer, and M. Meyer Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform Nucleic Acids Res. 40 2012 e3
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3
-
-
Kircher, M.1
Sawyer, S.2
Meyer, M.3
-
28
-
-
84865704283
-
Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: Candidate etiological agents for snake inclusion body disease
-
e00180-12
-
M.D. Stenglein, C. Sanders, A.L. Kistler, J.G. Ruby, J.Y. Franco, D.R. Reavill, F. Dunker, and J.L. Derisi Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: Candidate etiological agents for snake inclusion body disease MBio 3 2012 e00180-12
-
(2012)
MBio
, vol.3
-
-
Stenglein, M.D.1
Sanders, C.2
Kistler, A.L.3
Ruby, J.G.4
Franco, J.Y.5
Reavill, D.R.6
Dunker, F.7
Derisi, J.L.8
-
29
-
-
84862286967
-
Comparison of two suspension arrays for simultaneous detection of five biothreat bacterial in powder samples
-
Y. Yang, J. Wang, H. Wen, and H. Liu Comparison of two suspension arrays for simultaneous detection of five biothreat bacterial in powder samples J. Biomed. Biotechnol. 2012 2012 831052
-
(2012)
J. Biomed. Biotechnol.
, vol.2012
, pp. 831052
-
-
Yang, Y.1
Wang, J.2
Wen, H.3
Liu, H.4
-
30
-
-
43049176810
-
A conserved and immunodominant lipoprotein of Francisella tularensis is proinflammatory but not essential for virulence
-
C.A. Forestal, H. Gil, M. Monfett, C.E. Noah, G.J. Platz, D.G. Thanassi, J.L. Benach, and M.B. Furie A conserved and immunodominant lipoprotein of Francisella tularensis is proinflammatory but not essential for virulence Microb. Pathogen. 44 2008 512 523
-
(2008)
Microb. Pathogen.
, vol.44
, pp. 512-523
-
-
Forestal, C.A.1
Gil, H.2
Monfett, M.3
Noah, C.E.4
Platz, G.J.5
Thanassi, D.G.6
Benach, J.L.7
Furie, M.B.8
-
31
-
-
80052627663
-
Advances in genetic manipulation of obligate intracellular bacterial pathogens
-
P.A. Beare, K.M. Sandoz, A. Omsland, D.D. Rockey, and R.A. Heinzen Advances in genetic manipulation of obligate intracellular bacterial pathogens Front. Microbiol. 2 2011 97
-
(2011)
Front. Microbiol.
, vol.2
, pp. 97
-
-
Beare, P.A.1
Sandoz, K.M.2
Omsland, A.3
Rockey, D.D.4
Heinzen, R.A.5
-
32
-
-
84857656651
-
Construction of normalized RNA-Seq libraries for next-generation sequencing using the crab duplex-specific nuclease
-
unit 4.12
-
D.C. Christodoulou, J.M. Gorham, D.S. Herman, and J.G. Seidman Construction of normalized RNA-Seq libraries for next-generation sequencing using the crab duplex-specific nuclease Curr. Protoc. Mol. Biol. 2011 unit 4.12
-
(2011)
Curr. Protoc. Mol. Biol.
-
-
Christodoulou, D.C.1
Gorham, J.M.2
Herman, D.S.3
Seidman, J.G.4
|