Temporal changes in population structure of a marine planktonic diatom

PLoS ONE

Volumn 9, Issue 12, 2014, Pages

  Tesson, Sylvie V M ^a,b   Montresor, Marina ^a   Procaccini, Gabriele ^a   Kooistra, Wiebe H C F ^a  

^a STAZIONE ZOOLOGICA ANTON DOHRN   (Italy)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; CELL DIVISION; CONTROLLED STUDY; DIATOM; DNA EXTRACTION; ELECTROPHORESIS; GENETIC VARIABILITY; HETEROZYGOSITY; MICROSATELLITE MARKER; NONHUMAN; PHYTOPLANKTON; PLANKTON; POLYMERASE CHAIN REACTION; POPULATION DYNAMICS; POPULATION GENETICS; POPULATION SIZE; POPULATION STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; PROBABILITY; PSEUDONITZSCHIA; PSEUDONITZSCHIA MULTISTRIATA; REPRODUCTION; SEDIMENTATION; SPECIES RICHNESS; GENETICS;

BACILLARIOPHYTA; NITZSCHIA ALBA; PSEUDO-NITZSCHIA; PSEUDO-NITZSCHIA MULTISTRIATA;

MICROSATELLITE DNA;

BAYES THEOREM; DIATOMS; GENETIC VARIATION; GENETICS, POPULATION; MICROSATELLITE REPEATS; PLANKTON;

EID: 84918540767     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0114984     Document Type: Article

References (45)

1. Dawson MN, Sen Gupta A, England MH (2005) Coupled biophysical global ocean model and molecular genetic analyses identify multiple introductions of cryptogenic species. Proc Natl Acad Sci USA 102: 11968-11973.
2. Darling KF, Kucera M, Wade CM (2007) Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist. Proc Natl Acad Sci USA 104: 5002-5007.
3. Casteleyn G, Leliaert F, Backeljau T, Debeer AE, Kotaki Y, et al. (2010) Limits to gene flow in a cosmopolitan marine planktonic diatom. Proc Natl Acad Sci USA 107: 12952-12957.
4. Rynearson TA, Armbrust EV (2004) Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (Bacillariophyceae). J Phycol 40: 34-43.
5. Rynearson TA, Newton JA, Armbrust EV (2006) Spring bloom development, genetic variation, and population succession in the planktonic diatom Ditylum brightwellii. Limnol Oceanogr 51: 1249-1261.
6. Adams NG, Trainer VL, Rocap G, Herwig RP, Hauser L (2009) Genetic population structure of Pseudo-nitzschia pungens (Bacillariophyceae) from the Pacific Northwest and North Sea. J Phycol 45: 1037-1045.
7. Nagai S, Nishitani G, Sakamoto S, Sugaya T, Lee CK, et al. (2009) Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites. Mol Ecol 18: 2337-2352.
8. Godhe A, Härnström K (2010) Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi. Mol Ecol 19: 4478-4490.
9. Casabianca S, Penna A, Pecchioli E, Jordi A, Basterretxea G, et al. (2011) Population genetic structure and connectivity of the harmful dinoflagellate Alexandrium minutum in the Mediterranean Sea. Proc Biol Sci 279: 129-138.
10. Richlen ML, Erdner DL, McCauley LAR, Libera K, Anderson DM (2013) Extensive genetic diversity and rapid population differentiation during blooms of Alexandrium fundyense (Dinophyceae) in an isolated salt pond on Cape Cod, MA, USA. Ecol Evol 2: 2583-2594.
11. Tesson SVM, Legrand C, van Oosterhout C, Montresor M, Kooistra WHCF, et al. (2013) Mendelian inheritance pattern and high mutation rates of microsatellite alleles in the diatom Pseudo-nitzschia multistriata. Protist 164: 89-100.
12. Rynearson TA, Armbrust EV (2005) Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii. Mol Ecol 14: 1631-1640.
13. Bolnick DI, Fitzpatrick BM (2007) Sympatric Speciation: Models and Empirical Evidence. Annu Rev Ecol Evol Sys 38: 459-487.
14. Carroll SP, Hendry AP, Reznick DN, Fox CW (2007) Evolution on ecological time-scales. Funct Ecol 21: 387-393.
15. Hendry AP, Nosil P, Rieseberg LH (2007) The speed of ecological speciation. Funct Ecol 21: 455-464.
16. Grosholz E (2002) Ecological and evolutionary consequences of coastal invasions. Trends Ecol Evol 17: 22-27.
17. Bagley MJ, Geller JB (2000) Microsatellite DNA analysis of native and invading populations of European green crabs. In: Pederson J, editor. Marine Bioinvasions: Proceedings of the First National Conference. MIT Sea Grant College Program. pp. 241-243.
18. Härnström K, Ellegaard M, Andersen TJ, Godhe A (2011) Hundred years of genetic structure in a sediment revived diatom population. Proc Natl Acad Sci USA 108: 4252-4257.
19. Ribera d'Alcalà M, Conversano F, Corato F, Licandro P, Mangoni O, et al. (2004) Seasonal patterns in plankton communities in a pluriannual time series at a coastal Mediterranean site (Gulf of Naples): an attempt to discern recurrences and trends. Sci Mar 68: 65-83.
20. Zingone A, Siano R, D'Alelio D, Sarno D (2006) Potentially toxic and harmful microalgae from coastal waters of the Campania region (Tyrrhenian Sea, Mediterranean Sea). Harmful Algae 5: 321-337.
21. D'Alelio D, Ribera d'Alcalà M, Dubroca L, Sarno D, Zingone A, et al. (2010) The time for sex: A biennial life cycle in a marine planktonic diatom. Limnol Oceanogr 55: 106-114.
22. D'Alelio D, Amato A, Luedeking A, Montresor M (2009) Sexual and vegetative phases in the planktonic diatom Pseudo-nitzschia multistriata. Harmful Algae 8: 225-232.
23. Tesson SV, Borra M, Kooistra WHCF, Procaccini G (2011) Microsatellite primers in the planktonic diatom Pseudo-nitzschia multistriata (Bacillariophyceae). Am J Bot 98: e33-35.
24. Menna M, Mercatini A, Uttieri M, Buonocore B, Zambianchi E (2007) Wintertime transport processes in the Gulf of Naples investigated by HF radar measurements of surface currents. Il Nuovo Cimento 30: 605-622.
25. Edler L and Elbrächter M (2010). The Utermöhl method for quantitative phytoplankton analysis. In: Karlson B, Cusack CK and Bresnan E, editors. Microscopic and Molecular Methods for Quantitative Phytoplankton Analysis IOC Manuals and Guides n. 55. pp. 13-20.
26. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
27. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
28. Arnaud-Haond S, Belkhir K (2007) GENCLONE: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization. Mol Ecol Notes 7: 15-17.
29. Valière N (2002) GIMLET: a computer program for analysing genetic individual identification data. Mol Ecol Notes 2: 377-379.
30. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
31. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software Structure: a simulation study. Mol Ecol 14: 2611-2620.
32. Earl DA, von Holdt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4(2): 359-361.
33. Cornuet J-M, Luikart G (1996) Description and Power Analysis of Two Tests for Detecting Recent Population Bottlenecks From Allele Frequency Data. Genetics 144: 2001-2014.
34. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (1996-2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier (France).
35. R Development Core Team (2008). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org.
36. Casteleyn G, Evans KM, Backeljau T, D'Hondt S, Chepurnov VA, et al. (2009) Lack of population genetic structuring in the marine planktonic diatom Pseudo-nitzschia pungens (Bacillariophyceae) in a heterogeneous area in the Southern Bight of the North Sea. Mar Biol 156: 1149-1158.
37. Rynearson TA, Lin EO, Armbrust EV (2009) Metapopulation structure in the planktonic diatom Ditylum brightwellii (Bacillariophyceae). Protist 160: 111-121.
38. Erdner DL, Richlen M, McCauley LA, Anderson DM (2011) Diversity and dynamics of a widespread bloom of the toxic dinoflagellate Alexandrium fundyense. PLoS ONE 6: e22965.
39. Koester JA, Swalwell JE, von Dassow P, Armbrust EV (2010) Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta). BMC Evol Biol 10: 1.
40. Montresor M, Di Prisco C, Sarno D, Margiotta F, Zingone A (2013) Diversity and germination patterns of diatom resting stages at a coastal Mediterranean site. Mar Ecol Progr Ser 484: 79-95.
41. Uttieri M, Cianelli D, Nardelli BB, Buonocore B, Falco P, et al. (2011) Multiplatform observation of the surface circulation in the Gulf of Naples (Southern Tyrrhenian Sea). Ocean Dynamics 61: 779-796.
42. Hartl DL, Clark AG (1989) Population subdivision and migration. In: Hartl DL, Clark AG, editors. Principles of Population Genetics. Sunderland, Massachusetts: Sinauer Associates, Inc.
43. Hanski I (1999) Metapopulation Ecology. Oxford: Oxford University Press. 328 p.
44. Congestri R, Polizzano S, Albertano P (2008) Toxic Pseudo-nitzschia populations from the middle Tyrrhenian Sea (Mediterranean Sea, Italy). In: Evangelista V, Barsanti L, Frassanito AM, Passarelli V, Gualtieri P, editors. Algal Toxins: Nature, Occurrence, Effect and Detection. NATO Science Series, Chemistry and Biology. Springer Netherlands. pp. 197-210.
45. Lelong A, Hegaret H, Soudant P, Bates SS (2012) Pseudo-nitzschia (Bacillariophyceae) species, domoic acid and amnesic shellfish poisoning: revisiting previous paradigms. Phycologia 51: 168-216.