Spring bloom development, genetic variation, and population succession in the planktonic diatom Ditylum brightwellii

Limnology and Oceanography

Volumn 51, Issue 3, 2006, Pages 1249-1261

  Rynearson, T A ^a,c   Newton, J A ^b   Armbrust, E V ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c UNIVERSITY OF RHODE ISLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAL BLOOM; DIATOM; GENETIC VARIATION; PLANKTON; SPATIAL VARIATION; TEMPORAL VARIATION;

JUAN DE FUCA STRAIT; NORTH AMERICA; PUGET SOUND; UNITED STATES; WASHINGTON [UNITED STATES];

BACILLARIOPHYTA; DITYLUM BRIGHTWELLII; NITZSCHIA ALBA;

EID: 33744902072     PISSN: 00243590     EISSN: None     Source Type: Journal    
DOI: 10.4319/lo.2006.51.3.1249     Document Type: Article

References (46)

1. ARMBRUST, E. V., AND OTHERS. 2004. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science 306: 79-86.
2. _, AND H. M. GALINDO. 2001. Rapid evolution of a sexual reproduction gene in centric diatoms of the genus Thalassiosira. Appl. Environ. Microbiol. 67: 3501-3513.
3. BEHNKE, A., T. FRIEDL, V. A. CHEPURNOV, AND D. G. MANN. 2004. Reproductive compatibility and rDNA sequence analysis in the Sellaphora pupula species complex (Bacillariophyta). J. Phycol. 40: 193-208.
4. BELKHIR, K. 2001. GENETIX, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome et Populations, CNRS UPR 9060, Univ. de Montpellier II.
5. BEMAN, M. J., K. R. ARRIGO, AND P. A. MATSON. 2005. Agricultural runoff fuels large phytoplankton blooms in vulnerable areas of the ocean. Nature 434: 211-214.
6. BRZEZINSKI, M. A., D. A. NELSON, V. M. FRANCK, AND D. E. SIGMON. 2001. Silicon dynamics within an intense open-ocean diatom bloom in the Pacific sector of the Southern Ocean. Deep Sea Res. II 48: 3997-4018.
7. COLEMAN, A. W., A. SUAREZ, AND L. J. GOFF. 1994. Molecular delineation of species and syngens in volvocacean green algae (Chlorophyta). J. Phycol. 30: 80-90.
8. EBBESMEYER, C. C., AND C. A. BARNES. 1980. Control of a fjord basin's dynamics by tidal mixing in embracing sill zones. Est. Coast. Mar. Sci. 2: 311-330.
9. ELLSTRAND, N. C., AND M. L. ROOSE. 1987. Patterns of genotypic diversity in clonal plant species. Am. J. Bot. 74: 123-131.
10. ETTERSON, J. 2004. Evolutionary potential of Chamaecrista fasciculata in relation to climate change. I. Clinal patterns of selection along an environmental gradient in the great plains. Evolution 58: 1446-1458.
11. EVANS, K. M., S. F. KUHN, AND P. K. HAYES. 2005. High levels of genetic diversity and low levels of genetic differentiation in North Sea Pseudo-nitzschia pungens (Bacillariophyceae) populations I. J. Phycol. 41: 506-514.
12. GALLAGHER, J. C. 1980. Population genetics of Skeletonema costatum (Bacillariophyceae) in Narragansett Bay. J. Phycol. 16: 464-474.
13. _. 1982. Physiological variation and electrophoretic banding patterns of genetically different seasonal populations of Skeletonema costatum (Bacillariophyceae). J. Phycol. 18: 148-162.
14. GOUDET, J. 1999. PCA-GEN for Windows, V. 1.2. Distributed by the author, Institute of Ecology, Univ. of Lausanne.
15. HALKETT, F., J.-C. SIMON, AND F. BALLOUX. 2005. Tackling the population genetics of clonal and partially clonal organisms. TREE 20: 194-201.
16. HARTL, D. L., AND A. G. CLARK. 1997. Principles of population genetics, 3rd ed. Sinauer.
17. KALINOWSKI, S. T. 2002. Evolutionary and statistical properties of three genetic distances. Mol. Ecol. 11: 1263-1273.
18. KARL, D. M., AND OTHERS. 2001. Ecological nitrogen-to-phosphorus stoichiometry at station ALOHA. Deep Sea Res. II 48: 1529-1566.
19. KATECHAKIS, A., H. STIBOR, U. SOMMER, AND T. HANSEN. 2004. Feeding selectivities and food niche separation of Acartia clausi, Penilia avirostris (Crustacea) and Doliolum denticulatum (Thaliacea) in Blanes Bay (Catalan Sea, NW Mediterranean). J. Plank. Res. 26: 589-603.
20. KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
21. LEWIS, R. J., S. I. JENSEN, D. M. DENICOLA, V. I. MILLER, K. D. HOAGLAND, AND S. G. ERNST. 1997. Genetic variation in the diatom Fragilaria capucina (Fragilariaceae) along a latitudinal gradient across North America. Pl. Syst. Evol. 204: 99-108.
22. MARGALEF, R. 1978. Life-forms of phytoplankton as survival alternatives in an unstable environment. Oceanol. Acta 1: 493-509.
23. MEDLIN, L. K., H. J. ELWOOD, S. STICKEL, AND M. L. SOGIN. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491-499.
24. _. 1991. Morphological and genetic variation within the diatom Skeletonema costatum (Bacillariophyta): Evidence for a new species, Skeletonema pseudocostatum. J. Phycol. 27: 514-524.
25. NEWTON, J. A., S. L. ALBERTSON, K. VAN VOORHIS, C. MALOY, AND E. SIEGEL. 2002. Washington state marine water quality, 1998 through 2000. Publication No. 02-03-056. Washington State Department of Ecology, Environmental Assessment Program.
26. PAASCHE, E. 1973. The influence of cell size on growth rate, silica content, and some other properties of four marine diatom species. Norw. J. Bot. 20: 197-204.
27. PEINERT, R., A. SAURE, P. STEGMAN, C. STEINEN, H. HAARDT, AND V. SMETACEK. 1982. Dynamics of primary production and sedimentation in a coastal ecosystem. Nether. J. Sea Res. 16: 276-289.
28. PIRY, S., A. ALAPETITE, J.-M. CORNUET, D. PAETKAU, L. BAUDOUIN, AND A. ESTOUP. 2004. GeneClass2: A software for genetic assignment and first-generation migrant detection. J. Hered. 95: 536-539.
29. RANNALA, B., AND J. L. MOUNTAIN. 1997. Detecting immigration by using multilocus genotypes. PNAS 94: 9197-9201.
30. RAYMOND, M., AND F. ROUSSET. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.
31. ROUND, F. E., R. M. CRAWFORD, AND D. G. MANN. 1990. The diatoms. Cambridge Univ. Press.
32. ROUSSEAU, V., A. LEYNAERT, N. DAOUD, AND C. LANCELOT. 2002. Diatom succession, silicification and silicic acid availability in Belgian coastal waters (southern North Sea). Mar. Ecol. Prog. Ser. 236: 61-73.
33. RYNEARSON, T. A., AND E. V. ARMBRUST. 2000. DNA fingerprinting reveals extensive genetic diversity in a field population of the centric diatom Ditylum brightwellii. Limnol. Oceanogr. 45: 1329-1340.
34. _, AND _. 2004. Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (Bacillariophyceae). J. Phycol. 40: 34-43.
35. _, AND _. 2005. Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii. Mole. Ecol. 14: 1631-1640.
36. SARNO, D., W. H. C. KOOISTRA, L. K. MEDLIN, I. PERCOPO, AND A. ZINGONE. 2005. Diversity in the genus Skeletonema (Bacillariophyceae). II. An assessment of the taxonomy of S. costatum-like species with the description of four new species. J. Phycol. 41: 151-176.
37. SCHMITTNER, A. 2005. Decline of the marine ecosystem caused by a reduction in the Atlantic overturning circulation. Nature 434: 628-633.
38. SMAYDA, T. J. 1998. Patterns of variability characterizing marine phytoplankton, with examples from Narragansett Bay. ICES J. Mar. Sci. 55: 562-573.
39. STEELE, R. L. 1965. Induction of sexuality in two centric diatoms. Bioscience 15: 298.
40. VAN OOSTERHOUT, C., B. HUTCHINSON, D. DEREK WILLS, AND P. SHIPLEY. 2003. Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
41. VIARD, F., P. BREMOND, R. LABBO, F. JUSTY, B. DELAY, AND P. JARNE. 1996. Microsatellites and the genetics of highly selfing populations in the freshwater snail Bulinus truncatus. Genetics 142: 1237-1247.
42. WAITE, A., P. K. BIENFANG, AND P. J. HARRISON. 1992a. Spring bloom sedimentation in a subarctic ecosystem I. Nutrient sensitivity. Mar. Biol. 114: 119-129.
43. _. 1992b. Spring bloom sedimentation in a subarctic ecosystem II. Succession and sedimentation. Mar. Biol. 114: 131-138.
44. WATTIER, R., C. R. ENGEL, P. SAUMITOU-LAPRADE, AND M. VALERO. 1998. Short allele dominance as a source of heterozygote deficiency at microsatellite loci: Experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta). Mol. Ecol. 7: 1569-1573.
45. WEIR, B. S., AND C. C. COCKERHAM. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
46. ZAR, J. H. 1996. Biostatistical analysis., Prentice Hall.