Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites

Molecular Ecology

Volumn 18, Issue 11, 2009, Pages 2337-2352

  Nagai, S ^a   Nishitani, G ^a   Sakamoto, S ^a   Sugaya, T ^b   Lee, C K ^c   Kim, C H ^d   Itakura, S ^e   Yamaguchi, M ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

^b FISHERIES RESEARCH AGENCY   (Japan)

^c National Fisheries Research and Development Institute (NFRDI)   (South Korea)

^d Pukyong National University   (South Korea)

^e NATIONAL VETERINARY ASSAY LABORATORY   (Japan)

Author keywords

Cochlodinium polykrikoides; Dinoflagellate; Dispersal; Genetic structure; Microsatellites; Transfer

Indexed keywords

MICROSATELLITE DNA; PROTOZOAL DNA;

ALLELE; ANIMAL; ARTICLE; DINOFLAGELLATE; DNA SEQUENCE; GENE FLOW; GENE LINKAGE DISEQUILIBRIUM; GENETIC POLYMORPHISM; GENETICS; JAPAN; KOREA; POPULATION GENETICS;

ALLELES; ANIMALS; DINOFLAGELLIDA; DNA, PROTOZOAN; GENE FLOW; GENETICS, POPULATION; JAPAN; KOREA; LINKAGE DISEQUILIBRIUM; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA;

COCHLODINIUM POLYKRIKOIDES; DINOPHYCEAE;

EID: 65949094598     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04193.x     Document Type: Article

References (80)

1. Anderson DM (1989) Toxic algal blooms and red tides: a global perspective. In : Red Tides: Biology, Environmental Science and Toxicology (eds Okaichi T, Anderson DM, Nemoto T pp. 11 20. Elsevier, New York.
2. Anderson DM (1998) Physiology and bloom dynamics of toxic Alexandrium species, with emphasis on life cycle transitions. In : Physiological Ecology of Harmful Algal Blooms (eds by Anderson DM, Cembella AD, Hallegraeff GM pp. 29 48. NATO ASI series. Series G: Ecological Sciences, vol. 41. Springer-Verlag, Berlin, Germany.
3. Anderson DM, Glibert PM, Burkholder JM (2002) Harmful algal blooms and eutrophication: nutrient sources, composition, and consequences. Estuaries, 25, 704 726.
4. Balloux F, Lugon-Moulin N (2002) The estimation of population and differentiation with microsatellite markers. Molecular Ecology, 11, 155 165.
5. Bolch CJS, de Salas MF (2007) A review of the molecular evidence for ballast water introduction of the toxic dinoflagellate Gymnodinium catenatum and the Alexandrium 'tamrensis complex' to Australasia. Harmful Algae, 6, 465 485.
6. Chakraborty R, Jin L (1993) Determination of relatedness between individuals by DNA fingerprinting. Human Biology, 65, 875 895.
7. Costantini F, Fauvelot C, Abbiati M (2007) Genetic structuring of the temperate gorgonian coral (Corallium rubrum) across the western Mediterranean Sea revealed by microsatellites and nuclear sequences. Molecular Ecology, 16, 5168 5182.
8. Drake JW, Glickman BW, Ripley LS (1983) Updating the theory of mutation. American Scientist, 71, 621 630.
9. Duran S, Palacin C, Becerro A, Turon X, Giribet G (2004) Genetic diversity and population structure of the commercially harvested sea urchin Paracentrotus lividus (Echinodermata, Echinoidea). Molecular Ecology, 13, 3317 3328.
10. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software Structure: a simulation study. Molecular Ecology, 14, 2611 2620.
11. Evans KM, Bates SS, Medlin LK, Hayes PK (2004) Microsatellite marker development and genetic variation in the toxic marine diatom Pseudo-nitzschia multiseries (Bacillariophyceae) Journal of Phycology, 40, 911 920.
12. Excoffier L, Laval G, Schneider S (2005) Arlequin, version 3.11: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
13. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567 1587.
14. Genovesi B, Nagai S, Nishitani G et al 2008) Genetic structure of Asian geographic populations in Alexandrium catenella (Dinophyceae): a study using microsatellite markers. p. 39. Abstracts of the 13th International conference on Harmful Algae, Hong Kong, China.
15. Hallegraeff GM, Bolch CJ (1992) Transport of dinoflagellate cysts in ships' ballast water: implications for plankton biogeography and aquaculture. Journal of Plankton Research, 14, 1067 1084.
16. Harding RM, Boyce AJ, Clegg JB (1992) The evolution of tandemly repetitive DNA: recombination rules. Genetics, 132, 847 859.
17. Honjo T, Imada N, Oshima Y et al 1998) Potential transfer of Heterocapsa circularisquama with pearl oyster consignments. In : Harmful Algae (eds Reguera B, Blanco J, Fernández ML, Wyatt T pp. 224 226. Xunta de Galicia and IOC of UNESCO 1998, Spain.
18. Hu JY, Kawamura H, Hong HS, Qi YQ (2000) A review on the currents in the South China Sea: seasonal circulation, South China Sea Warm Current and Kuroshio intrusion. Journal of Oceanography, 56, 607 624.
19. Iglesias-Rodriguez MD, Schofield OM, Batley J, Medlin LK, Hayes PK (2006) Intraspecific genetic diversity in the marine Coccolithophore Emiliania huxleyi (Prymnesiophyceae): the use of microsatellite analysis in marine phytoplankton population studies. Journal of Phycology, 42, 526 536.
20. Iwataki M, Kawami H, Mizushima K et al 2008) Phylogenetic relationships in the harmful dinoflagellate Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae) inferred from LSU rDNA sequences. Harmful Algae, 7, 271 277.
21. Katoh O, Nakagawa N, Matsui S, Yamada H, Watanabe T (2006) Long-term fluctuations of water temperature in the Japan Sea and the Tsushima Strait shown by data from prefectural oceanographic observations along the coastal and offshore measurement lines. [in Japanese, with abstract in English]. Bulletin of the on Coastal Oceanography, 44, 19 24.
22. Kawahara M, Uye S, Ohtsu K, Iizumi H (2006) Unusual population explosion of the giant jellyfish Nemopilema nomurai (Scyphozoa: Rhizostomeae) in East Asian waters. Marine Ecology Progress in Series, 307, 161 173.
23. Kemp WM, Mitsch WJ (1979) Turbulence and phytoplankton diversity: a general model of the 'paradox of plankton.' Ecological Modeling, 7, 201 222.
24. Ki JS, Han MS (2008) Implications of complete nuclear large subunit ribosomal RNA molecules from the harmful unarmored dinoflagellate Cochlodinium polykrikoides (Dinophyceae) and relatives. Biochemical Systematics and Ecology, 36, 573 583.
25. Kim DI (2003) Physiological and ecological studies on harmful red tide dinoflagellate Cochlodinium polykrikoides (Margalef) [in Japanese]. PhD Thesis. Kyusyu University, Fukuoka, Japan.
26. Kim CH, Cho HJ, Shin JB, Moon CH, Matsuoka K (2002) Regeneration from hyaline cysts of Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae), a red tide organism along the Korean coast. Phycologia, 41, 667 669.
27. Kim DI, Matsuyama Y, Nagasoe S et al 2004) Effects of temperature, salinity and irradiance on the growth of the harmful red tide dinoflagellate Cochlodinium polykrikoides Margalef (Dinophyceae). Journal of Plankton Research, 26, 61 66.
28. Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics, 49, 725 738.
29. Levinson G, Gutman GA (1987) Slipped-strand mis-pairing: a major mechanism for DNA sequence evolution. Molecular Biological Evolution, 4, 203 221.
30. Li DJ, Zhang J, Huang DJ, Wu Y, Liang J (2002) Oxygen depletion off the Changjiang (Yangtze River) Estuary. Science in China Series D: Earth Sciences, 45, 1137 1146.
31. Li NS, Zhao SL, Wasiliev B (2000) Geology of Marginal Sea in the Northwest Pacific. [in Chinese]. Heilongjiang Education Press, Harbin, China.
32. Lie HJ, Cho CH, Lee JH (1998) Separation of the Kuroshio water and its penetration onto the continental shelf west of Kyusyu. Journal of Geophysical Research, 103, 2963 2976.
33. Liu JX, Gao TX, Wu SF, Zhang YP (2007) Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegelm, 1985). Molecular Ecology, 16, 275 288.
34. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209 220.
35. Margalef R (1961) Hidrografia y fitoplancton de un área marine de la costa meridional de Puerto Tico. Investigation Pesquera, 18, 33 96.
36. Margalef R (1967) Some concepts relative to the organization of plankton. Oceanography and Marine Biology Annual Review, 5, 257 289.
37. Margalef R (1978) Life-forms of phytoplankton as survival alternatives in an unstable environment. Oceanologia, 1, 493 509.
38. Matsuoka K, Iwataki M (2004) Present status in study on a harmful unarmored dinoflagellate Cochlodinium polykrikoides Margalef [in Japanese, with abstract in English]. Bulletin of the Plankton Society of Japan, 51, 38 45.
39. Matsuoka K, Iwataki M, Kawami H (2008) Morphology and taxonomy of chain-forming species of the genus Cochlodinium (Dinophyceae). Harmful Algae, 7, 261 270.
40. Mikulski CM, Park YT, Jones KL et al 2008) Development and field application of rRNA-targeted probes for the detection of Cochlodinium polykrikoides Margalef in Korean coastal waters using whole cell and sandwich hybridization formats. Harmful Algae, 7, 347 359.
41. Miller MP (1997) Tools for Population Genetic Analyses (tfpga) 1.3: A Windows Program for the Analysis of Allozyme and Molecular Population Genetic Data. Computer software distributed by the author.
42. Miyahara K, Uji R, Yamada H et al 2005) A harmful bloom of Cochlodinium polykrikoides Margalef (Dinophyceae) in the coastal area of San-in, western part of the Japan Sea, in September 2003 [in Japanese, with abstract in English]. Bulletin of the Plankton Society of Japan, 52, 11 18.
43. Nagai S (2007) Microsatellite markers reveal population genetic structure in the noxious red tide-causing algae Heterosigma akashiwo (Raphidophyceae) in Japanese coastal waters [in Japanese]. Japanese Journal of Phycology (Sôrui), 55, 187 191.
44. Nagai S, Itakura S, Matsuyama Y, Kotani Y (2003) Encystment under laboratory conditions of the toxic dinoflagellate Alexandrium tamiyavanichii (Dinophyceae) isolated from the Seto Inland Sea. Japan Phycologia, 42, 646 653.
45. Nagai S, Lian CL, Hamaguchi M et al 2004a) Development of microsatellite markers in the toxic dinoflagellate Alexandrium tamarense (Dinophyceae). Molecular Ecology Notes, 4, 83 85.
46. Nagai S, Matsuyama Y, Oh SJ, Itakura S (2004b) Effect of nutrients and temperature on encystment of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) isolated from Hiroshima Bay. Japan Plankton Biology and Ecology, 51, 103 109.
47. Nagai S, McCauley L, Yasuda N et al 2006a) Development of microsatellite markers in the toxic dinoflagellate Alexandrium minutum (Dinophyceae). Molecular Ecology Notes, 6, 756 758.
48. Nagai S, Sekino M, Matsuyama Y, Itakura S (2006b) Development of microsatellite markers in the toxic dinoflagellate Alexandrium catenella (Dinophyceae). Molecular Ecology Notes, 6, 120 122.
49. Nagai N, Tadokoro K, Kuroda K, Sugimoto T (2006c) Occurrence characteristics of chaetognath species along the PM transect in the Japan Sea during 1972-2002. Journal of Oceanography, 62, 597 606.
50. Nagai S, Yamaguchi S, Lian LC, Matsuyama Y, Itakura S (2006d) Development of microsatellite markers in the noxious red tide-causing algae Heterosigma akashiwo (Raphidophyceae). Molecular Ecology Notes, 6, 477 479.
51. Nagai S, Lian CL, Yamaguchi S et al 2007a) Microsatellite markers reveal population genetic structure of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) in Japanese coastal waters. Journal of Phycology, 43, 43 54.
52. Nagai S, Nishitani G, Yamaguchi S et al 2007b) Development of microsatellite markers in the noxious red tide-causing dinoflagellate Heterocapsa circularisquama (Dinophyceae). Molecular Ecology Notes, 7, 993 995.
53. Nagai S, Nishitani G, Tomaru Y et al 2008) Predation on the ciliate Myrionecta rubra by the toxic dinoflagellate Dinophysis fortii and observation of sequestration of ciliate chloroplasts. Journal of Phycology, 44, 909 922.
54. Nei M (1972) Genetic distance between populations. The American Naturalist, 106, 283 292.
55. Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, USA, 70, 3321 3323.
56. Nishitani G, Nagai S, Masseret E et al 2007a) Development of compound microsatellite markers in the toxic dinoflagellate Alexandrium catenella (Dinophyceae). Plankton and Benthos Research, 2, 128 133.
57. Nishitani G, Nagai S, Sakamoto S et al 2007b) Development of compound microsatellite markers in the harmful dinoflagellate Cochlodinium polykrikoides (Dinophyceae). Molecular Ecology Notes, 7, 827 829.
58. Park JG, Jeong MK, Lee JA, Cho KJ, Kwo OS (2001) Diurnal vertical migration of a harmful dinoflagellate Cochlodinium polykrikoides (Dinophyceae), during a red tide in coastal waters of Namhae Island, Korea. Phycologia, 40, 292 297.
59. Pfiester LA, Anderson DM (1987) Dinoflagellate reproduction. In : The Biology of Dinoflagellates (ed. Taylor FJR pp. 611 648. Blackwell Scientific Publication, London.
60. Pritchard JK, Matthew Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
61. Raymond M, Rousset F (1995) GenePop (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248 249.
62. Renshaw MA, Soltysiak K, Arreola D et al 2006) Microsatellite DNA markers for population genetic studies in the dinoflagellate Karenia brevis. Molecular Ecology Notes, 6, 1157 1159.
63. Rice WR (1989) Analyzing tables of statistical data. Evolution, 43, 223 225.
64. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219 1228.
65. Rynearson TA, Armbrust EV (2005) Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii. Molecular Ecology, 14, 1631 1640.
66. Santos SR, Rodríguez CG, Lasker HR, Coffroth MA (2003) Symbiodinium sp. association in the gorgonian Pseudo-pterogorgia elisabethae in the Bahamas: high levels of genetic variability and population structure in symbiotic dinoflagellates. Marine Biology, 143, 111 120.
67. Scholin CA, Hallegraeff GM, Anderson DM (1995) Molecular evolution of the Alexandrium tamarense 'species complex' (Dinophyceae): dispersal in the North American and West Pacific regions. Phycologia, 34, 472 485.
68. Smayda TJ (1973) The growth of Skeletonema costatum during a winter-spring bloom in Narragansett Bay, Rhode Island. Norwegian Journal of Botany, 20, 219 247.
69. Smayda TJ (1980) Phytoplankton species succession. In : The Physiological Ecology of Phytoplankton (ed. Morris I pp. 493 570. Blackwell Scientific Publication, Oxford, UK.
70. Smayda TJ (2002) Adaptive ecology, growth strategies and the global bloom expansion of dinoflagellates. Journal of Oceanography, 58, 281 294.
71. Takane Y, Young FW, Leeuw JD (1976) Non-metric individual differences multidimensional scaling: alternating least squares method with optional scaling features. Psychometrika, 42, 7 67.
72. Takikawa T, Yoon JH (2005) Volume transport through the Tsushima Straits estimated from sea level difference. Journal of Oceanography, 61, 699 708.
73. Tauz D, Renz M (1984) Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Research, 12, 4127 4138.
74. Tsang LM, Chan BKK, Ma KY, Chu KH (2008) Genetic differentiation, hybridization and adaptive divergence in two subspecies of the acorn barnacle Tetraclita japonica in the northwestern Pacific. Molecular Ecology, 17, 4154 4163.
75. Wolff RK, Plaeke R, Jeffreys AJ, White R (1991) Unequal crossing over between homologous chromosomes is not the major mechanism involved in the generation of new alleles at VNTR loci. Genomics, 5, 382 384.
76. Yamatogi T (2006) Physiological ecology of a harmful dinoflagellate Cochlodinium polykrikoides occurring in coastal waters of Kyushu. Japan Bulletin of the Nagasaki Prefectural Institute of Fisheries, 32, 23 90.
77. Yamatogi T, Maruta H, Ura K (2002) Occurrence of Cochlodinium polykrikoides red tide and its growth characteristics in Imari Bay in 1999.
78. Yeh FC, Yang RC, Boyle T, Ye ZH, Mao JX (1997) PopGene, the User-Friendly Shareware for Population Genetic Analysis. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton, Canada.
79. Yoon YH (2001) A summary on the red tide mechanisms of the harmful dinoflagellate Cochlodinium polykrikoides in Korean coastal waters. Bulletin of the Plankton Society of Japan, 48, 113 120.
80. Young FW, Takane F, Lewyckyj R (1980) ALSCAL: a multidimensional scaling package with several individual differences options. American Statistician, 34, 117 118.