Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (Bacillariophyceae)

Journal of Phycology

Volumn 40, Issue 1, 2004, Pages 34-43

  Rynearson, Tatiana A ^a   Armbrust, E Virginia ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Diatom; Ditylum brightwellii; Estuary; Genetic diversity; Physiology; Phytoplankton; Population differentiation; Selection

Indexed keywords

DIATOM; ESTUARY; GENETIC DIFFERENTIATION; PHYTOPLANKTON; POPULATION GENETICS;

JUAN DE FUCA STRAIT; NORTH AMERICA; PUGET SOUND; UNITED STATES; WASHINGTON [UNITED STATES];

ALGAE; BACILLARIOPHYCEAE; BACILLARIOPHYTA; DITYLUM; DITYLUM BRIGHTWELLII; EUKARYOTA; NITZSCHIA ALBA;

EID: 1342290847     PISSN: 00223646     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1529-8817.2004.03089.x     Document Type: Article

References (64)

1. Armbrust, E. V. & Galindo, H. M. 2001. Rapid evolution of a sexual reproduction gene in centric diatoms of the genus Thalassiosira. Appl. Environ. Microbiol. 67:3501-13.
2. Aspinwall, N. & Christian, T. 1992. Clonal structure, genotypic diversity and seed production in populations of Filipendula rubra (Rosaceae) from the northcentral United States. Am. J. Bot. 79:294-9.
3. Belkhir, K. 2001. GENETIX, logiciel sous Windows™ pour la génétique des populations. V4.02. Laboratoire Génome et Populations. CNRS UPR 9060, Université de Montpellier 11, Montpellier, France.
4. Bolch, C. J. S., Blackburn, S. I., Hallegraeff, G. M. & Vaillancourt, R. E. 1999. Genetic variation among strains of the toxic dinoflagellate Gymnodinium catenatum (Dinophyceae). J. Phycol. 35:356-67.
5. Boss, E., Perry, M. J. & Talbot, M. C. 1998. Observation of an intense deep-water intrusion in Puget Sound. Puget Sound Research '98 proceedings, Olympia, WA: Puget Sound Water Quality Action Team, Washington State Convention and Trade Center, Seattle, Washington, pp. 228-38.
6. Brand, L. E. 1982. Genetic variability and spatial patterns of genetic differentiation in the reproductive rates of the marine coccolithophores Emiliania huxleyi and Gephyrocapsa oceanica. Limnol. Oceanogr. 27:236-45.
7. Brand, L. E. 1990. Review of genetic variation in marine phytoplankton species and the ecological implications. Biol. Ocean. 6:397-409.
8. Brand, L. E., Guillard, R. R. L. & Murphy, L. S. 1981. A method for the rapid and precise determination of acclimated phytoplankton reproduction rates. J. Plankton Res. 3:193-201.
9. Bucklin, A., Kaartvedt, S., Guarnieri, M. & Goswami, U. 2000. Population genetics of drifting (Calanus spp.) and resident (Acartia clausi) plankton in Norwegian fjords. J. Plankton Res. 22:1237-51.
10. Cannon, G. A., Holbrook, J. R. & Pashinski, D. J. 1990. Variations in the onset of bottom-water intrusions over the entrance sill of a fjord. Estuaries 13:31-42.
11. Carpenter, E. J. & Guillard, R. R. L. 1971. Intraspecific differences in nitrate half-saturation constants for three species of marine phytoplankton. Ecology 52:183-5.
12. Carvalho, G. R. 1994. Evolutionary genetics of aquatic clonal invertebrates: concepts, problems and prospects. In Beaumont, A. R. [Ed.] Genetics and Evolution of Aquatic Organisms. Chapman & Hall, London, UK pp. 291-323.
13. Chakraborty, R., De Andrade, M., Daiger, S. P. & Budowle, B. 1992. Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Ann. Hum. Gen. 56:45-57.
14. Cokelet, E. D., Stewart, R. J. & Ebbesmeyer, C. C. 1991. Concentrations and ages of conservative pollutants in Puget Sound. Puget Sound Research '91 proceedings, Olympia, WA: Puget Sound Water Quality Action Team, Washington State Convention and Trade Center, Seattle, Washington, pp. 99-107.
15. Day, J. H. 1963. The complexity of the biotic environment In Harding, J. P. & Tebble, N. [Eds.] Speciation in the Sea. Systematics Associates, London, pp. 31-49.
16. Ebbesmeyer, C. C. & Barnes, C. A. 1980. Control of a fjord basin's dynamics by tidal mixing in embracing sill zones. Est. Coast. Mar. Sci 2:311-30.
17. Finlay, B. 2002. Global dispersal of free-living microbial eukaryote species. Science 296:1061-3.
18. Gallagher, J. C. 1980. Population genetics of Skeletonema costatum (Bacillariophyceae) in Narragansett Bay. J. Phycol. 16:464-74.
19. Gallagher, J. C. 1982. Physiological variation and electrophoretic banding patterns of genetically different seasonal popluations of Skeletonema costatum (Bacillariophyceae). J. Phycol. 18:148-62.
20. Gallagher, J. C. & Alberte, R. S. 1985. Photosynthetic and cellular photoadaptive characteristics of three ecotypes of the marine diatom Skeletonema costatum (Grev.) Cleve. J. Exp. Mar. Biol. Ecol. 94:233-50.
21. Goudet, J. 1999. PCA-GEN for Windows, V. 1.2. Distributed by the author, Institute of Ecology, University of Lausanne, Lausanne, Switzerland.
22. Goudet, J., Raymond, M., de Meeüs, T. & Rousset, F. 1996. Testing differentiation in diploid populations. Genetics 144:1933-40.
23. Guillard, R. R. L. 1975. Culture of phytoplankton for feeding marine invertebrates. In Smith, W. L. & Chaney, M. H. [Eds.] Culture of Marine Invertebrate Animals. Plenum Press, New York, pp. 29-60.
24. Guillard, R. R. L. & Kilham, P. 1977. The ecology of marine planktonic diatoms. In Werner, D. [Ed.] The Biology of Diatoms. Blackwell, London, pp. 327-469.
25. Hamilton, M. B., Pincus, E. L., Di Fiore, A. & Fleischer, R. C. 1999. Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTech. 27:500-7.
26. Hart, T. J. 1963. Speciation in marine phytoplankton. In Harding, J. P. & Tebble, N. [Eds.] Speciation in the Sea. Systematics Associates, London, pp. 145-55.
27. Hillbish, T. J. 1996. Population genetics of marine species: the interaction of natural selection and historically differentiated populations. J. Exp. Mar. Biol. Ecol. 200:67-83.
28. Iglesias-Rodriguez, D. M., Saez, A. G., Groben, R., Edwards, K. J., Batley, J., Medlin, L. K. & Hayes, P. K. 2002. Polymorphic microsatellite loci in global populations of the marine coccolithophorid Emiliania huxleyi. Mol. Ecol. Notes 2:495-7.
29. Jagielo, T. H., LeClair, L. L. & Vorderstrasse, B. A. 1996. Genetic variation and population structure of lingcod. Trans. Am. Fish. Soc. 125:372-86.
30. Kijas, J. M., Fowler, J. C., Garbett, C. A. & Thomas, M. R. 1994. Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. BioTechology 16:657-62.
31. Knutsen, H., Jorde, P. E., Andre, C. & Stenseth, N. C. 2003. Fine-scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Mol. Ecol. 12:385-94.
32. Lynch, M., Gabriel, W. & Wood, A. M. 1991. Adaptive and demographic responses of plankton populations to environmental change. Limnol. Oceanogr. 36:1301-12.
33. Maingon, R. D. C., Ward, R. D., Hamilton, J. G. C., Noyes, H. A., Souza, N., Kemp, S. J. & Watts, P. C. 2003. Genetic identification of two sibling species of Lutzomyia longipalpis (Diptera: Psychodidae) that produce distinct male sex pheromones in Sobral, Ceara State, Brazil. Mol. Ecol. 12:1879-94.
34. Mann, D. G. 1999. The species concept in diatoms. Phycologia 38:437-95.
35. McGowan, J. A. 1971. Oceanic biogeography of the Pacific. In Funnell, B. M. & Riedel, W. R. [Eds.] The Micropalaeontology of the Oceans. Cambridge University Press, Cambridge, pp. 3-74.
36. McPherson, A. A., O'Reilly, P. T., McParland, T. L., Jones, M. W. & Bentzen, P. 2001. Isolation of nine novel tetranucleotide microsatellites in Atlantic herring (Clupea harengus). Mol. Ecol. Notes 1:31-2.
37. Medlin, L. K., Barker, G. L. A., Campbell, L., Green, J. C., Hayes, P. K., Marie, D., Wrieden, S. & Vaulot, D. 1996. Genetic characterisation of Emiliania huxleyi (Haptophyta). J. Mar. Syst. 9:13-31.
38. Medlin, L. K., Elwood, H. J., Stickel, S. & Sogin, M. L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71:491-9.
39. Mofjeld, H. O. & Larsen, L. H. 1984. Tides and tidal currents of the inland waters of western Washington. NOAA Technical Memorandum ERL PMEL-56. Washington, D.C., National Oceanic and Atmospheric Administration, pp. 51.
40. Newton, J. A., Albertson, S. L., Nakata, K. & Clishe, C. 1998. Washington State Marine Water Quality. Publication no. 98-338. Washington State Department of Ecology, Olympia, WA, USA, pp. 1-98.
41. Newton, J. A., Albertson, S. L., Van Voorhis, K., Maloy, C. & Siegel, E. 2002. Washington State Marine Water Quality, 1998 Through 2000. Publication no. 02-03-056. Washington State Department of Ecology, Environmental Assessment Program, Olympia, WA, USA, pp. 1-111.
42. Oliveira, R. P., Broude, N. E., Macedo, A. M., Cantor, C. R., Smith, C. L. & Pena, S. D. J. 1998. Probing the genetic population structure of Trypanosoma cruzi with polymorphic microsatellites. Proc. Natl. Acad. Sci. U.S.A. 95:3776-80.
43. Paasche, E. 1973. The influence of cell size on growth rate, silica content, and some other properties of four marine diatom species. Norw. J. Bol. 20:197-204.
44. Palumbi, S. R. 1994. Genetic divergence, reproductive isolation, and marine speciation. Annu. Rev. Ecol. Syst. 25:547-72.
45. Pernin, P. & Cariou, M. L. 1997. Evidence for clonal structure of natural populations of free-living amoebae of the genus Naegleria. Genet. Res. Camb. 69:173-81.
46. Pfrender, M. E. & Lynch, M. 2000. Quantitative genetic variation in Daphnia: temporal changes in genetic architecture. Evol. 54:1502-9.
47. Raymond, M. & Rousset, F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86:248-9.
48. Rocha-Olivares, A. & Vetter, R. D. 1999. Effects of oceanographic circulation on the gene flow, genetic structure, and phylogeography of the rosethorn rockfish (Sebastes helvomaculatus). Can. J. Fish Aquat. Sci. 56:803-13.
49. Round, F. E., Crawford, R. M. & Mann, D. G. 1990. The Diatoms. Cambridge University Press, Cambridge, 747 pp.
50. Rynearson, T. A. & Armbrust, E. V. 2000. DNA fingerprinting reveals extensive genetic diversity in a field population of the centric diatom Ditylum brightwellii. Limnol. Oceanogr. 45: 1329-40.
51. Seeb, L. W. 1998. Gene flow and introgression within and among three species of rockfishes, Sebastes auriculatus, S. caurinus and S. maliger. J. Hered. 89:393-403.
52. Skov, J., Lundholm, N., Pocklington, R., Rosendahl, S. & Moestrup, O. 1997. Studies on the marine planktonic diatom Pseudonitzschia. I. Isozyme variation among isolates of P. pseudodelicatissima during a bloom in Danish coastal waters. Phycologia 36:374-80.
53. Sokal, R. R. & Rohlf, F. J. 1995. Biometry: the Principles and Practice of Statistics in Biological Research. W. H. Freeman and Co., New York, 850 pp.
54. Taylor, M. S. & Hellberg, M. E. 2003. Genetic evidence for local retention of pelagic larvae in a Caribbean reef fish. Science 299:107-9.
55. Thomson, R. E. 1994. Physical oceanography of the Strait of Georgia-Puget Sound-Juan de Fuca Strait system. In Wilson, R. C. H., Beamish, R. J., Aitken, F. & Bell, J. [Eds.] Review of the Marine Environment and Biota of Strait of Georgia, Puget Sound und Juan de Fuca Strait: Proceedings of the BC/Washington Symposium on the Marine Environment, January 13 & 14, 1994. Fisheries and Oceans, Ottawa, Canada, pp. 36-100.
56. Ury, H. K. 1976. A comparison of four procedures for multiple comparisons among means (pairwise contrasts) for arbitrary sample sixes. Technometrics 18:89-97.
57. Van der Strate, H. J., Van de Zande, L., Stam, W. T. & Olsen, J. L. 2002. The contribution of haploids, diploids and clones to fine-scale population structure in the seaweed Cladophoris membranacea (Chlorophyta). Mol. Ecol. 11: 329-45.
58. van Oosterhout, C., Hutchinson, B., Derek Wills, D. & Shipley, P. 2003. Micro-Checker. Distributed by authors, University of Hull, UK.
59. Waite, A. & Harrison, P. J. 1992. Role of sinking and ascent during sexual reproduction in the marine diatom Ditylum brightwellii. Mar. Ecol. Prog. Ser. 87:113-22.
60. Wattier, R., Engel, C. R., Saumitou-LaPrade, P. & Valero, M. 1998. Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1 CT in Gracilaria gracilis (Rhodophyta). Mol. Ecol. 7:1569-73.
61. Weir, B. S. 1996. Genetic Data Analysis II. Sinauer Associates, Sunderland, MA, 445 pp.
62. Weir, B. S. & Cockerham, C. C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-70.
63. Wood, A. M. 1988. Molecular biology, single cell analysis and quantitative genetics: new evolutionary genetic approaches in phytoplankton ecology. In. Yentsch, C. M., Mague, F. C. & Horan, P. K. [Eds.] Immunochemical Approaches to Coastal, Estuarine and Oceanographic Questions. Springer-Verlag, New York, pp. 41-73.
64. Wood, A. M., Lande, R. & Fryxell, G. A. 1987. Quantitative genetic analysis of morphological variation in an Antarctic diatom grown at two light intensities. J. Phycol. 23: 42-54.