-
1
-
-
13244254993
-
Revealing metabolic phenotypes in plants: Inputs from NMR analysis
-
CrossRef
-
Ratcliffe, R. G. and Shachar-Hill, Y. (2005) Revealing metabolic phenotypes in plants: inputs from NMR analysis. Biol. Rev. 80, 27-43 CrossRef
-
(2005)
Biol. Rev.
, vol.80
, pp. 27-43
-
-
Ratcliffe, R.G.1
Shachar-Hill, Y.2
-
3
-
-
85067769495
-
Plant Metabolic Flux Analysis: Methods and Protocols
-
Humana Press, New York
-
Dieuaide-Noubhani, M. and Alonso, A. P. (2014) Plant Metabolic Flux Analysis: Methods and Protocols, Methods in Molecular Biology, vol. 1090, Humana Press, New York
-
(2014)
Methods in Molecular Biology
, vol.1090
-
-
Dieuaide-Noubhani, M.1
Alonso, A.P.2
-
4
-
-
84994912223
-
Metabolic control analysis of plant metabolism
-
CrossRef
-
ap Rees, T. and Hill, S. A. (1994) Metabolic control analysis of plant metabolism. Plant Cell Environ. 17, 587-599 CrossRef
-
(1994)
Plant Cell Environ.
, vol.17
, pp. 587-599
-
-
Ap Rees, T.1
Hill, S.A.2
-
5
-
-
84899823167
-
Metabolic flux analysis of plastidic isoprenoid biosynthesis in poplar leaves emitting and nonemitting isoprene
-
CrossRef PubMed
-
Ghirardo, A., Wright, L. P., Bi, Z., Rosenkranz, M., Pulido, P., Rodríguez-Concepción, M., Niinemets, U., Brüggemann, N., Gershenzon, J. and Schnitzler, J. P. (2014) Metabolic flux analysis of plastidic isoprenoid biosynthesis in poplar leaves emitting and nonemitting isoprene. Plant Physiol. 165, 37-51 CrossRef PubMed
-
(2014)
Plant Physiol.
, vol.165
, pp. 37-51
-
-
Ghirardo, A.1
Wright, L.P.2
Bi, Z.3
Rosenkranz, M.4
Pulido, P.5
Rodríguez-Concepción, M.6
Niinemets, U.7
Brüggemann, N.8
Gershenzon, J.9
Schnitzler, J.P.10
-
6
-
-
0032566703
-
Unidirectional steady state rates of central metabolism enzymes measured simultaneously in a living plant tissue
-
CrossRef PubMed
-
Roscher, A., Emsley, L., Raymond, P. and Roby, C. (1998) Unidirectional steady state rates of central metabolism enzymes measured simultaneously in a living plant tissue. J. Biol. Chem. 273, 25053-25061 CrossRef PubMed
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 25053-25061
-
-
Roscher, A.1
Emsley, L.2
Raymond, P.3
Roby, C.4
-
7
-
-
84879919367
-
Arabidopsis plants perform arithmetic division to prevent starvation at night
-
CrossRef PubMed
-
Scialdone, A., Mugford, S. T., Feike, D., Skeffington, A., Borrill, P., Graf, A., Smith, A. M. and Howard, M. (2013) Arabidopsis plants perform arithmetic division to prevent starvation at night. eLife 2, e00669 CrossRef PubMed
-
(2013)
ELife
, vol.2
, pp. e00669
-
-
Scialdone, A.1
Mugford, S.T.2
Feike, D.3
Skeffington, A.4
Borrill, P.5
Graf, A.6
Smith, A.M.7
Howard, M.8
-
8
-
-
84874980587
-
Functioning of a metabolic flux sensor in Escherichia coli
-
CrossRef PubMed
-
Kochanowski, K., Volkmer, B., Gerosa, L., Haverkorn van Rijsewijk, B. R., Schmidt, A. and Heinemann, M. (2013) Functioning of a metabolic flux sensor in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 110, 1130-1135 CrossRef PubMed
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 1130-1135
-
-
Kochanowski, K.1
Volkmer, B.2
Gerosa, L.3
Haverkorn Van Rijsewijk, B.R.4
Schmidt, A.5
Heinemann, M.6
-
9
-
-
13244284946
-
Enzymes, metabolites and fluxes
-
CrossRef PubMed
-
Fell, D. A. (2005) Enzymes, metabolites and fluxes. J. Exp. Bot. 56, 267-272 CrossRef PubMed
-
(2005)
J. Exp. Bot.
, vol.56
, pp. 267-272
-
-
Fell, D.A.1
-
10
-
-
67349212928
-
Insights into plant metabolic networks from steady-state metabolic flux analysis
-
CrossRef PubMed
-
Kruger, N. J. and Ratcliffe, R. G. (2009) Insights into plant metabolic networks from steady-state metabolic flux analysis. Biochimie 91, 697-702 CrossRef PubMed
-
(2009)
Biochimie
, vol.91
, pp. 697-702
-
-
Kruger, N.J.1
Ratcliffe, R.G.2
-
11
-
-
34248141676
-
Fluxomics: Mass spectrometry versus quantitative imaging
-
CrossRef PubMed
-
Wiechert, W., Schweissgut, O., Takanaga, H. and Frommer, W. B. (2007) Fluxomics: mass spectrometry versus quantitative imaging. Curr. Opin. Plant Biol. 10, 323-330 CrossRef PubMed
-
(2007)
Curr. Opin. Plant Biol.
, vol.10
, pp. 323-330
-
-
Wiechert, W.1
Schweissgut, O.2
Takanaga, H.3
Frommer, W.B.4
-
12
-
-
33749250188
-
Rapid metabolism of glucose detected with FRET glucose nanosensors in epidermal cells and intact roots of Arabidopsis RNA-silencing mutants
-
CrossRef PubMed
-
Deuschle, K., Chaudhuri, B., Okumoto, S., Lager, I., Lalonde, S. and Frommer, W. B. (2006) Rapid metabolism of glucose detected with FRET glucose nanosensors in epidermal cells and intact roots of Arabidopsis RNA-silencing mutants. Plant Cell 18, 2314-2325 CrossRef PubMed
-
(2006)
Plant Cell
, vol.18
, pp. 2314-2325
-
-
Deuschle, K.1
Chaudhuri, B.2
Okumoto, S.3
Lager, I.4
Lalonde, S.5
Frommer, W.B.6
-
13
-
-
33644853940
-
Measuring multiple fluxes through plant metabolic networks
-
CrossRef PubMed
-
Ratcliffe, R. G. and Shachar-Hill, Y. (2006) Measuring multiple fluxes through plant metabolic networks. Plant J. 45, 490-511 CrossRef PubMed
-
(2006)
Plant J.
, vol.45
, pp. 490-511
-
-
Ratcliffe, R.G.1
Shachar-Hill, Y.2
-
14
-
-
84859364209
-
Metabolic cartography: Experimental quantification of metabolic fluxes from isotopic labelling studies
-
CrossRef PubMed
-
O'Grady, J., Schwender, J., Shachar-Hill, Y. and Morgan, J. A. (2012) Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies. J. Exp. Bot. 63, 2293-2308 CrossRef PubMed
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 2293-2308
-
-
O'Grady, J.1
Schwender, J.2
Shachar-Hill, Y.3
Morgan, J.A.4
-
15
-
-
84859346785
-
Strategies for investigating the plant metabolic network with steady-state metabolic flux analysis: Lessons from an Arabidopsis cell culture and other systems
-
CrossRef PubMed
-
Kruger, N. J., Masakapalli, S. K. and Ratcliffe, R. G. (2012) Strategies for investigating the plant metabolic network with steady-state metabolic flux analysis: lessons from an Arabidopsis cell culture and other systems. J. Exp. Bot. 63, 2309-2323 CrossRef PubMed
-
(2012)
J. Exp. Bot.
, Issue.63
, pp. 2309-2323
-
-
Kruger, N.J.1
Masakapalli, S.K.2
Ratcliffe, R.G.3
-
16
-
-
0033979908
-
Strategies for metabolic flux analysis in plants using isotope labelling
-
CrossRef PubMed
-
Roscher, A., Kruger, N. J. and Ratcliffe, R. G. (2000) Strategies for metabolic flux analysis in plants using isotope labelling. J. Biotechnol. 77, 81-102 CrossRef PubMed
-
(2000)
J. Biotechnol.
, vol.77
, pp. 81-102
-
-
Roscher, A.1
Kruger, N.J.2
Ratcliffe, R.G.3
-
17
-
-
84881315899
-
Analysis of metabolic flux using dynamic labelling and metabolic modelling
-
CrossRef PubMed
-
Fernie, A. R. and Morgan, J. A. (2013) Analysis of metabolic flux using dynamic labelling and metabolic modelling. Plant Cell Environ. 36, 1738-1750 CrossRef PubMed
-
(2013)
Plant Cell Environ.
, vol.36
, pp. 1738-1750
-
-
Fernie, A.R.1
Morgan, J.A.2
-
19
-
-
38449111120
-
An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
-
CrossRef PubMed
-
Young, J. D., Walther, J. L., Antoniewicz, M. R., Yoo, H. and Stephanopoulos, G. (2008) An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis. Biotechnol. Bioeng. 99, 686-699 CrossRef PubMed
-
(2008)
Biotechnol. Bioeng.
, vol.99
, pp. 686-699
-
-
Young, J.D.1
Walther, J.L.2
Antoniewicz, M.R.3
Yoo, H.4
Stephanopoulos, G.5
-
21
-
-
84868149733
-
13C-MFA) under photoautotrophic conditions
-
CrossRef PubMed
-
13C-MFA) under photoautotrophic conditions. Biotechnol. Bioeng. 109, 3030-3040 CrossRef PubMed
-
(2012)
Biotechnol. Bioeng.
, vol.109
, pp. 3030-3040
-
-
Martzolff, A.1
Cahoreau, E.2
Cogne, G.3
Peyriga, L.4
Portais, J.C.5
Dechandol, E.6
Le Grand, F.7
Massou, S.8
Gonc¸alves, O.9
Pruvost, J.10
Legrand, J.11
-
22
-
-
84875527498
-
Metabolic fluxes in an illuminated Arabidopsis rosette
-
CrossRef PubMed
-
Szecowka, M., Heise, R., Tohge, T., Nunes-Nesi, A., Vosloh, D., Huege, J., Feil, R., Lunn, J., Nikoloski, Z., Stitt, M., Fernie, A. R. and Arrivault, S. (2013) Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell 25, 694-714 CrossRef PubMed
-
(2013)
Plant Cell
, vol.25
, pp. 694-714
-
-
Szecowka, M.1
Heise, R.2
Tohge, T.3
Nunes-Nesi, A.4
Vosloh, D.5
Huege, J.6
Feil, R.7
Lunn, J.8
Nikoloski, Z.9
Stitt, M.10
Fernie, A.R.11
Arrivault, S.12
-
23
-
-
84887626505
-
Isotopically non-stationary metabolic flux analysis: Complex yet highly informative
-
CrossRef PubMed
-
Wiechert, W. and Nöh, K. (2013) Isotopically non-stationary metabolic flux analysis: complex yet highly informative. Curr. Opin. Biotechnol. 24, 979-986 CrossRef PubMed
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 979-986
-
-
Wiechert, W.1
Nöh, K.2
-
24
-
-
84899511589
-
INCA: A computational platform for isotopically non-stationary metabolic flux analysis
-
CrossRef PubMed
-
Young, J. D. (2014) INCA: a computational platform for isotopically non-stationary metabolic flux analysis. Bioinformatics 30, 1333-1335 CrossRef PubMed
-
(2014)
Bioinformatics
, vol.30
, pp. 1333-1335
-
-
Young, J.D.1
-
26
-
-
84900332453
-
Flux and reflux: Metabolite reflux in plant suspension cells and its implications on isotope-assisted metabolic flux analysis
-
CrossRef PubMed
-
Nargund, S., Misra, A., Zhang, X., Coleman, G. D. and Sriram, G. (2014) Flux and reflux: metabolite reflux in plant suspension cells and its implications on isotope-assisted metabolic flux analysis. Mol. BioSyst. 10, 1496-1508 CrossRef PubMed
-
(2014)
Mol. BioSyst.
, vol.10
, pp. 1496-1508
-
-
Nargund, S.1
Misra, A.2
Zhang, X.3
Coleman, G.D.4
Sriram, G.5
-
28
-
-
84859355304
-
Kinetic modelling of plant metabolic pathways
-
CrossRef PubMed
-
Rohwer, J. M. (2012) Kinetic modelling of plant metabolic pathways. J. Exp. Bot. 63, 2275-2292 CrossRef PubMed
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 2275-2292
-
-
Rohwer, J.M.1
-
29
-
-
84900827538
-
Kinetic models in industrial biotechnology - Improving cell factory performance
-
CrossRef PubMed
-
Almquist, J., Cvijovic, M., Hatzimanikatis, V., Nielsen, J. and Jirstrand, M. (2014) Kinetic models in industrial biotechnology - Improving cell factory performance. Metab. Eng. 24, 38-60 CrossRef PubMed
-
(2014)
Metab. Eng.
, vol.24
, pp. 38-60
-
-
Almquist, J.1
Cvijovic, M.2
Hatzimanikatis, V.3
Nielsen, J.4
Jirstrand, M.5
-
30
-
-
84870302280
-
Flux-balance modelling of plant metabolism
-
CrossRef PubMed
-
Sweetlove, L. J. and Ratcliffe, R. G. (2011) Flux-balance modelling of plant metabolism. Front. Plant Sci. 2, 38 CrossRef PubMed
-
(2011)
Front. Plant Sci.
, vol.2
, pp. 38
-
-
Sweetlove, L.J.1
Ratcliffe, R.G.2
-
31
-
-
84861165967
-
Are we ready for genome-scale modeling in plants?
-
CrossRef
-
Collakova, E., Yen, J. Y. and Senger, R. S. (2012) Are we ready for genome-scale modeling in plants? Plant Sci. 191-192, 53-70 CrossRef
-
(2012)
Plant Sci.
, vol.191-192
, pp. 53-70
-
-
Collakova, E.1
Yen, J.Y.2
Senger, R.S.3
-
32
-
-
84874976941
-
Plant genome-scale metabolic reconstruction and modelling
-
CrossRef PubMed
-
de Oliveira Dal'Molin, C. G. and Nielsen, L. K. (2013) Plant genome-scale metabolic reconstruction and modelling. Curr. Opin. Biotechnol. 24, 271-277 CrossRef PubMed
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 271-277
-
-
De Oliveira Dal'Molin, C.G.1
Nielsen, L.K.2
-
33
-
-
84881266381
-
e-photosynthesis: A comprehensive dynamic mechanistic model of C3 photosynthesis: From light capture to sucrose synthesis
-
CrossRef PubMed
-
Zhu, X. G., Wang, Y., Ort, D. R. and Long, S. P. (2013) e-photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis. Plant Cell Environ. 36, 1711-1727 CrossRef PubMed
-
(2013)
Plant Cell Environ.
, vol.36
, pp. 1711-1727
-
-
Zhu, X.G.1
Wang, Y.2
Ort, D.R.3
Long, S.P.4
-
34
-
-
84898717194
-
Elements required for an efficient NADP-malic enzyme type C4 photosynthesis
-
CrossRef PubMed
-
Wang, Y., Long, S. P. and Zhu, X. G. (2014) Elements required for an efficient NADP-malic enzyme type C4 photosynthesis. Plant Physiol. 164, 2231-2246 CrossRef PubMed
-
(2014)
Plant Physiol.
, vol.164
, pp. 2231-2246
-
-
Wang, Y.1
Long, S.P.2
Zhu, X.G.3
-
35
-
-
84898712690
-
Can the cyanobacterial carbon-concentrating mechanism increase photosynthesis in crop species? A theoretical analysis
-
CrossRef PubMed
-
McGrath, J. M. and Long, S. P. (2014) Can the cyanobacterial carbon-concentrating mechanism increase photosynthesis in crop species? A theoretical analysis. Plant Physiol. 164, 2247-2261 CrossRef PubMed
-
(2014)
Plant Physiol.
, vol.164
, pp. 2247-2261
-
-
McGrath, J.M.1
Long, S.P.2
-
36
-
-
84899150986
-
Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa
-
CrossRef PubMed
-
Wang, J. P., Naik, P. P., Chen, H. C., Shi, R., Lin, C. Y., Liu, J., Shuford, C. M., Li, Q., Sun, Y. H., Tunlaya-Anukit, S. et al. (2014) Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa . Plant Cell 26, 894-914 CrossRef PubMed
-
(2014)
Plant Cell
, vol.26
, pp. 894-914
-
-
Wang, J.P.1
Naik, P.P.2
Chen, H.C.3
Shi, R.4
Lin, C.Y.5
Liu, J.6
Shuford, C.M.7
Li, Q.8
Sun, Y.H.9
Tunlaya-Anukit, S.10
-
37
-
-
84894054579
-
Advancing metabolic models with kinetic information
-
CrossRef
-
Link, H., Christodoulou, D. and Sauer, U. (2014) Advancing metabolic models with kinetic information. Curr. Opin. Biotechnol. 29, 8-14 CrossRef
-
(2014)
Curr. Opin. Biotechnol.
, vol.29
, pp. 8-14
-
-
Link, H.1
Christodoulou, D.2
Sauer, U.3
-
38
-
-
14744280370
-
A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness
-
CrossRef PubMed
-
Gibon, Y., Blaesing, O. E., Hannemann, J., Carillo, P., Höhne, M., Hendriks, J. H. M., Palacios, N., Cross, J., Selbig, J. and Stitt, M. (2004) A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16, 3304-3325 CrossRef PubMed
-
(2004)
Plant Cell
, vol.16
, pp. 3304-3325
-
-
Gibon, Y.1
Blaesing, O.E.2
Hannemann, J.3
Carillo, P.4
Höhne, M.5
Hendriks, J.H.M.6
Palacios, N.7
Cross, J.8
Selbig, J.9
Stitt, M.10
-
39
-
-
84864258618
-
A whole-cell computational model predicts phenotype from genotype
-
CrossRef PubMed
-
Karr, J. R., Sanghvi, J. C., Macklin, D. N., Gutschow, M. V., Jacobs, J. M., Boliva, B., Assad-Garcia, N., Glass, J. I. and Covert, M. W. (2012) A whole-cell computational model predicts phenotype from genotype. Cell 150, 389-401 CrossRef PubMed
-
(2012)
Cell
, vol.150
, pp. 389-401
-
-
Karr, J.R.1
Sanghvi, J.C.2
Macklin, D.N.3
Gutschow, M.V.4
Jacobs, J.M.5
Boliva, B.6
Assad-Garcia, N.7
Glass, J.I.8
Covert, M.W.9
-
41
-
-
79960906784
-
Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos
-
CrossRef PubMed
-
Hay, J. and Schwender, J. (2011) Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos. Plant J. 67, 526-541 CrossRef PubMed
-
(2011)
Plant J.
, vol.67
, pp. 526-541
-
-
Hay, J.1
Schwender, J.2
-
42
-
-
84878263472
-
Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis
-
CrossRef PubMed
-
Töpfer, N., Caldana, C., Grimbs, S., Willmitzer, L., Fernie, A. R. and Nikoloski, Z. (2013) Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis. Plant Cell 25, 1197-1211 CrossRef PubMed
-
(2013)
Plant Cell
, vol.25
, pp. 1197-1211
-
-
Töpfer, N.1
Caldana, C.2
Grimbs, S.3
Willmitzer, L.4
Fernie, A.R.5
Nikoloski, Z.6
-
43
-
-
84885218166
-
Multiscale metabolic modeling: Dynamic flux balance analysis on a whole-plant scale
-
CrossRef PubMed
-
Grafahrend-Belau, E., Junker, A., Eschenröder, A., Müller, J., Schreiber, F. and Junker, B. H. (2013) Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale. Plant Physiol. 163, 637-647 CrossRef PubMed
-
(2013)
Plant Physiol.
, vol.163
, pp. 637-647
-
-
Grafahrend-Belau, E.1
Junker, A.2
Eschenröder, A.3
Müller, J.4
Schreiber, F.5
Junker, B.H.6
-
45
-
-
84908565339
-
Assessing the metabolic impact of nitrogen availability using a compartmentalized maize leaf genome-scale model
-
PubMed
-
Simons, M., Saha, R., Amiour, N., Kumar, A., Guillard, L., Clément, G., Miquel, M., Li, Z., Mouille, G., Lea, P. J., Hirel, B. and Maranas, C. D. (2014) Assessing the metabolic impact of nitrogen availability using a compartmentalized maize leaf genome-scale model. Plant Physiol., doi:10.1104/pp.114.245787 PubMed
-
(2014)
Plant Physiol.
-
-
Simons, M.1
Saha, R.2
Amiour, N.3
Kumar, A.4
Guillard, L.5
Clément, G.6
Miquel, M.7
Li, Z.8
Mouille, G.9
Lea, P.J.10
Hirel, B.11
Maranas, C.D.12
-
46
-
-
84889643157
-
Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis
-
CrossRef PubMed
-
Chubukov, V., Uhr, M., Le Chat, L., Kleijn, R. J., Jules, M., Link, H., Aymerich, S., Stelling, J. and Sauer, U. (2013) Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis. Mol. Syst. Biol. 9, 709 CrossRef PubMed
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 709
-
-
Chubukov, V.1
Uhr, M.2
Le Chat, L.3
Kleijn, R.J.4
Jules, M.5
Link, H.6
Aymerich, S.7
Stelling, J.8
Sauer, U.9
-
47
-
-
84857975406
-
On the discordance of metabolomics with proteomics and transcriptomics: Coping with increasing complexity in logic, chemistry, and network interactions
-
CrossRef PubMed
-
Fernie, A. R. and Stitt, M. (2012) On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions. Plant Physiol. 158, 1139-1145 CrossRef PubMed
-
(2012)
Plant Physiol.
, vol.158
, pp. 1139-1145
-
-
Fernie, A.R.1
Stitt, M.2
-
48
-
-
77956703554
-
A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions
-
CrossRef PubMed
-
Williams, T. C. R., Poolman, M. G., Howden, A. J. M., Schwarzländer, M., Fell, D. A., Ratcliffe, R. G. and Sweetlove, L. J. (2010) A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions. Plant Physiol. 154, 311-323 CrossRef PubMed
-
(2010)
Plant Physiol.
, vol.154
, pp. 311-323
-
-
Williams, T.C.R.1
Poolman, M.G.2
Howden, A.J.M.3
Schwarzländer, M.4
Fell, D.A.5
Ratcliffe, R.G.6
Sweetlove, L.J.7
-
49
-
-
79960900581
-
13C metabolic flux analysis
-
CrossRef PubMed
-
13C metabolic flux analysis. Plant J. 67, 513-525 CrossRef PubMed
-
(2011)
Plant J.
, vol.67
, pp. 513-525
-
-
Hay, J.1
Schwender, J.2
-
50
-
-
84883762807
-
A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions
-
CrossRef PubMed
-
Cheung, C. Y. M., Williams, T. C. R., Poolman, M. G., Fell, D. A., Ratcliffe, R. G. and Sweetlove, L. J. (2013) A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions. Plant J. 75, 1050-1061 CrossRef PubMed
-
(2013)
Plant J.
, vol.75
, pp. 1050-1061
-
-
Cheung, C.Y.M.1
Williams, T.C.R.2
Poolman, M.G.3
Fell, D.A.4
Ratcliffe, R.G.5
Sweetlove, L.J.6
-
51
-
-
43449132092
-
Is maximization of molar yield in metabolic networks favoured by evolution?
-
CrossRef PubMed
-
Schuster, S., Pfeiffer, T. and Fell, D. A. (2008) Is maximization of molar yield in metabolic networks favoured by evolution? J. Theor. Biol. 252, 497-504 CrossRef PubMed
-
(2008)
J. Theor. Biol.
, vol.252
, pp. 497-504
-
-
Schuster, S.1
Pfeiffer, T.2
Fell, D.A.3
-
52
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
-
CrossRef PubMed
-
Schuetz, R., Kuepfer, L. and Sauer, U. (2007) Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol. Syst. Biol. 3, 119 CrossRef PubMed
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 119
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
-
53
-
-
40049101759
-
Predicting biological system objectives de novo from internal state measurements
-
CrossRef
-
Gianchandani, E. P., Oberhardt, M. A., Burgard, A. P., Maranas, C. D. and Papin, J. A. (2008) Predicting biological system objectives de novo from internal state measurements. BMC Bioinf. 9, 43 CrossRef
-
(2008)
BMC Bioinf.
, vol.9
, pp. 43
-
-
Gianchandani, E.P.1
Oberhardt, M.A.2
Burgard, A.P.3
Maranas, C.D.4
Papin, J.A.5
-
54
-
-
34548811453
-
The thermodynamic meaning of metabolic exchange fluxes
-
CrossRef PubMed
-
Wiechert, W. (2007) The thermodynamic meaning of metabolic exchange fluxes. Biophys. J. 93, 2255-2264 CrossRef PubMed
-
(2007)
Biophys. J.
, vol.93
, pp. 2255-2264
-
-
Wiechert, W.1
-
55
-
-
77955274603
-
Not just a circle: Flux modes in the plant TCA cycle
-
CrossRef PubMed
-
Sweetlove, L. J., Beard, K. F. M., Nunes-Nesi, A., Fernie, A. R. and Ratcliffe, R. G. (2010) Not just a circle: flux modes in the plant TCA cycle. Trends Plant Sci. 15, 462-470 CrossRef PubMed
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 462-470
-
-
Sweetlove, L.J.1
Beard, K.F.M.2
Nunes-Nesi, A.3
Fernie, A.R.4
Ratcliffe, R.G.5
-
56
-
-
79960933284
-
13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation
-
CrossRef PubMed
-
13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation. PLoS Pathogens 7, e1002091 CrossRef PubMed
-
(2011)
PLoS Pathogens
, vol.7
, pp. e1002091
-
-
Beste, D.J.V.1
Bonde, B.2
Hawkins, N.3
Ward, J.L.4
Beale, M.H.5
Noack, S.6
Nöh, K.7
Kruger, N.J.8
Ratcliffe, R.G.9
McFadden, J.10
-
57
-
-
10644266747
-
Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
-
CrossRef PubMed
-
Schwender, J., Goffman, F., Ohlrogge, J. B. and Shachar-Hill, Y. (2004) Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 432, 779-782 CrossRef PubMed
-
(2004)
Nature
, vol.432
, pp. 779-782
-
-
Schwender, J.1
Goffman, F.2
Ohlrogge, J.B.3
Shachar-Hill, Y.4
-
58
-
-
33845928752
-
Mitochondrial metabolism in developing embryos of Brassica napus
-
CrossRef PubMed
-
Schwender, J., Shachar-Hill, Y. and Ohlrogge, J. B. (2006) Mitochondrial metabolism in developing embryos of Brassica napus. J. Biol. Chem. 281, 34040-34047 CrossRef PubMed
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 34040-34047
-
-
Schwender, J.1
Shachar-Hill, Y.2
Ohlrogge, J.B.3
-
59
-
-
64249147274
-
The role of light in soybean seed filling metabolism
-
CrossRef PubMed
-
Allen, D. K., Ohlrogge, J. B. and Shachar-Hill, Y. (2009) The role of light in soybean seed filling metabolism. Plant J. 58, 220-234 CrossRef PubMed
-
(2009)
Plant J.
, vol.58
, pp. 220-234
-
-
Allen, D.K.1
Ohlrogge, J.B.2
Shachar-Hill, Y.3
-
60
-
-
84879473895
-
Seed architecture shapes embryo metabolism in oilseed rape
-
CrossRef PubMed
-
Borisjuk, L., Neuberger, T., Schwender, J., Heinzel, N., Sunderhaus, S., Fuchs, J., Hay, J. O., Tschiersch, H., Braun, H. P., Denolf, P. et al. (2013) Seed architecture shapes embryo metabolism in oilseed rape. Plant Cell 25, 1625-1640 CrossRef PubMed
-
(2013)
Plant Cell
, vol.25
, pp. 1625-1640
-
-
Borisjuk, L.1
Neuberger, T.2
Schwender, J.3
Heinzel, N.4
Sunderhaus, S.5
Fuchs, J.6
Hay, J.O.7
Tschiersch, H.8
Braun, H.P.9
Denolf, P.10
-
61
-
-
84862140116
-
Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments
-
CrossRef PubMed
-
Allen, D. K., Laclair, R. W., Ohlrogge, J. B. and Shachar-Hill, Y. (2012) Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments. Plant Cell Environ. 35, 1232-1244 CrossRef PubMed
-
(2012)
Plant Cell Environ.
, vol.35
, pp. 1232-1244
-
-
Allen, D.K.1
Laclair, R.W.2
Ohlrogge, J.B.3
Shachar-Hill, Y.4
-
62
-
-
75949123498
-
Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling
-
CrossRef PubMed
-
Masakapalli, S. K., Le Lay, P., Huddleston, J. E., Pollock, N. L., Kruger, N. J. and Ratcliffe, R. G. (2010) Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling. Plant Physiol. 152, 602-619 CrossRef PubMed
-
(2010)
Plant Physiol.
, vol.152
, pp. 602-619
-
-
Masakapalli, S.K.1
Le Lay, P.2
Huddleston, J.E.3
Pollock, N.L.4
Kruger, N.J.5
Ratcliffe, R.G.6
-
63
-
-
0042531959
-
A flux model of glycolysis and the oxidative pentosephosphate pathway in developing Brassica napus embryos
-
CrossRef PubMed
-
Schwender, J., Ohlrogge, J. B. and Shachar-Hill, Y. (2003) A flux model of glycolysis and the oxidative pentosephosphate pathway in developing Brassica napus embryos. J. Biol. Chem. 278, 29442-29453 CrossRef PubMed
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29442-29453
-
-
Schwender, J.1
Ohlrogge, J.B.2
Shachar-Hill, Y.3
-
64
-
-
35148880253
-
Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos
-
CrossRef PubMed
-
Alonso, A. P., Goffman, F. D., Ohlrogge, J. B. and Shachar-Hill, Y. (2007) Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos. Plant J. 52, 296-308 CrossRef PubMed
-
(2007)
Plant J.
, vol.52
, pp. 296-308
-
-
Alonso, A.P.1
Goffman, F.D.2
Ohlrogge, J.B.3
Shachar-Hill, Y.4
-
65
-
-
84877703455
-
The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply
-
CrossRef PubMed
-
Masakapalli, S. K., Kruger, N. J. and Ratcliffe, R. G. (2013) The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply. Plant J. 74, 569-582 CrossRef PubMed
-
(2013)
Plant J.
, vol.74
, pp. 569-582
-
-
Masakapalli, S.K.1
Kruger, N.J.2
Ratcliffe, R.G.3
-
66
-
-
84877647982
-
The spatial organization of metabolism within the plant cell
-
CrossRef PubMed
-
Sweetlove, L. J. and Fernie, A. R. (2013) The spatial organization of metabolism within the plant cell. Annu. Rev. Plant Biol. 64, 723-746 CrossRef PubMed
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 723-746
-
-
Sweetlove, L.J.1
Fernie, A.R.2
-
68
-
-
80455140467
-
Capturing metabolite channeling in metabolic flux phenotypes
-
CrossRef PubMed
-
Williams, T. C. R., Sweetlove, L. J. and Ratcliffe, R. G. (2011) Capturing metabolite channeling in metabolic flux phenotypes. Plant Physiol. 157, 981-984 CrossRef PubMed
-
(2011)
Plant Physiol.
, vol.157
, pp. 981-984
-
-
Williams, T.C.R.1
Sweetlove, L.J.2
Ratcliffe, R.G.3
-
69
-
-
37849026162
-
Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling
-
CrossRef PubMed
-
Graham, J. W. A., Williams, T. C. R., Morgan, M., Fernie, A. R., Ratcliffe, R. G. and Sweetlove, L. J. (2007) Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell 19, 3723-3738 CrossRef PubMed
-
(2007)
Plant Cell
, vol.19
, pp. 3723-3738
-
-
Graham, J.W.A.1
Williams, T.C.R.2
Morgan, M.3
Fernie, A.R.4
Ratcliffe, R.G.5
Sweetlove, L.J.6
-
70
-
-
84864407108
-
Bacterial-and plant-type phosphoenolpyruvate carboxylase isozymes from developing castor oil seeds interact in vivo and associate with the surface of mitochondria
-
CrossRef PubMed
-
Park, J., Khuu, N., Howard, A. S. M., Mullen, R. T. and Plaxton, W. C. (2012) Bacterial-and plant-type phosphoenolpyruvate carboxylase isozymes from developing castor oil seeds interact in vivo and associate with the surface of mitochondria. Plant J. 71, 251-262 CrossRef PubMed
-
(2012)
Plant J.
, vol.71
, pp. 251-262
-
-
Park, J.1
Khuu, N.2
Howard, A.S.M.3
Mullen, R.T.4
Plaxton, W.C.5
-
71
-
-
0037113867
-
The metabolic architecture of plant cells. Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells
-
CrossRef PubMed
-
Rontein, D., Dieuaide-Noubhani, M., Dufourc, E. J., Raymond, P. and Rolin, D. (2002) The metabolic architecture of plant cells. Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells. J. Biol. Chem. 277, 43948-43960 CrossRef PubMed
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 43948-43960
-
-
Rontein, D.1
Dieuaide-Noubhani, M.2
Dufourc, E.J.3
Raymond, P.4
Rolin, D.5
-
72
-
-
33746228190
-
Robustness of central carbohydrate metabolism in developing maize kernels
-
CrossRef PubMed
-
Spielbauer, G., Margl, L., Hannah, L. C., Römisch, W., Ettenhuber, C., Bacher, A., Gierl, A., Eisenreich, W. and Genschel, U. (2006) Robustness of central carbohydrate metabolism in developing maize kernels. Phytochemistry 67, 1460-1475 CrossRef PubMed
-
(2006)
Phytochemistry
, vol.67
, pp. 1460-1475
-
-
Spielbauer, G.1
Margl, L.2
Hannah, L.C.3
Römisch, W.4
Ettenhuber, C.5
Bacher, A.6
Gierl, A.7
Eisenreich, W.8
Genschel, U.9
-
73
-
-
57749118711
-
Metabolic network fluxes in heterotrophic Arabidopsis cells: Stability of the flux distribution under different oxygenation conditions
-
CrossRef PubMed
-
Williams, T. C. R., Miguet, L., Masakapalli, S. K., Kruger, N. J., Sweetlove, L. J. and Ratcliffe, R. G. (2008) Metabolic network fluxes in heterotrophic Arabidopsis cells: stability of the flux distribution under different oxygenation conditions. Plant Physiol. 148, 704-718 CrossRef PubMed
-
(2008)
Plant Physiol.
, vol.148
, pp. 704-718
-
-
Williams, T.C.R.1
Miguet, L.2
Masakapalli, S.K.3
Kruger, N.J.4
Sweetlove, L.J.5
Ratcliffe, R.G.6
-
74
-
-
84894243083
-
Metabolic flux phenotype of tobacco hairy roots engineered for increased geraniol production
-
CrossRef PubMed
-
Masakapalli, S. K., Ritala, A., Dong, L., van der Krol, A. R., Oksman-Caldentey, K. M., Ratcliffe, R. G. and Sweetlove, L. J. (2014) Metabolic flux phenotype of tobacco hairy roots engineered for increased geraniol production. Phytochemistry 99, 73-85 CrossRef PubMed
-
(2014)
Phytochemistry
, vol.99
, pp. 73-85
-
-
Masakapalli, S.K.1
Ritala, A.2
Dong, L.3
Van Der Krol, A.R.4
Oksman-Caldentey, K.M.5
Ratcliffe, R.G.6
Sweetlove, L.J.7
-
75
-
-
40749095603
-
Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons
-
CrossRef PubMed
-
Iyer, V. V., Sriram, G., Fulton, D. B., Zhou, R., Westgate, M. E. and Shanks, J. V. (2008) Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons. Plant Cell Environ. 31, 506-517 CrossRef PubMed
-
(2008)
Plant Cell Environ.
, vol.31
, pp. 506-517
-
-
Iyer, V.V.1
Sriram, G.2
Fulton, D.B.3
Zhou, R.4
Westgate, M.E.5
Shanks, J.V.6
-
76
-
-
34547658908
-
Parallel determination of enzyme activities and in vivo fluxes in Brassica napus embryos grown on organic or inorganic nitrogen source
-
CrossRef PubMed
-
Junker, B. H., Lonien, J., Heady, L. E., Rogers, A. and Schwender, J. (2007) Parallel determination of enzyme activities and in vivo fluxes in Brassica napus embryos grown on organic or inorganic nitrogen source. Phytochemistry 68, 2232-2242 CrossRef PubMed
-
(2007)
Phytochemistry
, vol.68
, pp. 2232-2242
-
-
Junker, B.H.1
Lonien, J.2
Heady, L.E.3
Rogers, A.4
Schwender, J.5
-
77
-
-
84902331417
-
The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a flexible balance between the cytosolic and plastidic contributions to carbohydrate oxidation in response to phosphate limitation
-
CrossRef PubMed
-
Masakapalli, S. K., Bryant, F. M., Kruger, N. J. and Ratcliffe, R. G. (2014) The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a flexible balance between the cytosolic and plastidic contributions to carbohydrate oxidation in response to phosphate limitation. Plant J. 78, 964-977 CrossRef PubMed
-
(2014)
Plant J.
, vol.78
, pp. 964-977
-
-
Masakapalli, S.K.1
Bryant, F.M.2
Kruger, N.J.3
Ratcliffe, R.G.4
-
78
-
-
84874590372
-
Carbon and nitrogen provisions alter the metabolic flux in developing soybean embryos
-
CrossRef PubMed
-
Allen, D. K. and Young, J. D. (2013) Carbon and nitrogen provisions alter the metabolic flux in developing soybean embryos. Plant Physiol. 161, 1458-1475 CrossRef PubMed
-
(2013)
Plant Physiol.
, vol.161
, pp. 1458-1475
-
-
Allen, D.K.1
Young, J.D.2
-
79
-
-
70350645014
-
Analysis of metabolic flux phenotypes for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis
-
CrossRef PubMed
-
Lonien, J. and Schwender, J. (2009) Analysis of metabolic flux phenotypes for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis. Plant Physiol. 151, 1617-1634 CrossRef PubMed
-
(2009)
Plant Physiol.
, vol.151
, pp. 1617-1634
-
-
Lonien, J.1
Schwender, J.2
-
80
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
PubMed
-
Lewis, N. E., Nagarajan, H. and Palsson, B. O. (2012) Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat. Rev. Microbiol. 10, 291-305 PubMed
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
81
-
-
84878459107
-
Responses to light intensity in a genome-scale model of rice metabolism
-
CrossRef PubMed
-
Poolman, M. G., Kundu, S., Shaw, R. and Fell, D. A. (2013) Responses to light intensity in a genome-scale model of rice metabolism. Plant Physiol. 162, 1060-1072 CrossRef PubMed
-
(2013)
Plant Physiol.
, vol.162
, pp. 1060-1072
-
-
Poolman, M.G.1
Kundu, S.2
Shaw, R.3
Fell, D.A.4
-
82
-
-
84868313377
-
Predictive modeling of biomass component tradeoffs in Brassica napus developing oilseeds based on in silico manipulation of storage metabolism
-
CrossRef PubMed
-
Schwender, J. and Hay, J. O. (2012) Predictive modeling of biomass component tradeoffs in Brassica napus developing oilseeds based on in silico manipulation of storage metabolism. Plant Physiol. 160, 1218-1236 CrossRef PubMed
-
(2012)
Plant Physiol.
, vol.160
, pp. 1218-1236
-
-
Schwender, J.1
Hay, J.O.2
-
83
-
-
75949088191
-
AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis
-
CrossRef PubMed
-
de Oliveira Dal'Molin, C. G., Quek, L. E., Palfreyman, R. W., Brumbley, S. M. and Nielsen, L. K. (2010) AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis. Plant Physiol. 152, 579-589 CrossRef PubMed
-
(2010)
Plant Physiol.
, vol.152
, pp. 579-589
-
-
De Oliveira Dal'Molin, C.G.1
Quek, L.E.2
Palfreyman, R.W.3
Brumbley, S.M.4
Nielsen, L.K.5
-
84
-
-
84881016108
-
Elucidating rice cell metabolism under flooding and drought stresses using flux-based modeling and analysis
-
CrossRef PubMed
-
Lakshmanan, M., Zhang, Z., Mohanty, B., Kwon, J. Y., Choi, H. Y., Nam, H. J, Kim, D. I. and Lee, D. Y. (2013) Elucidating rice cell metabolism under flooding and drought stresses using flux-based modeling and analysis. Plant Physiol. 162, 2140-2150 CrossRef PubMed
-
(2013)
Plant Physiol.
, vol.162
, pp. 2140-2150
-
-
Lakshmanan, M.1
Zhang, Z.2
Mohanty, B.3
Kwon, J.Y.4
Choi, H.Y.5
Nam, H.J.6
Kim, D.I.7
Lee, D.Y.8
-
85
-
-
79956137349
-
An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism
-
CrossRef PubMed
-
Pilalis, E., Chatziioannou, A., Thomasset, B. and Kolisis, F. (2011) An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism. Biotechnol. Bioeng. 108, 1673-1682 CrossRef PubMed
-
(2011)
Biotechnol. Bioeng.
, vol.108
, pp. 1673-1682
-
-
Pilalis, E.1
Chatziioannou, A.2
Thomasset, B.3
Kolisis, F.4
-
86
-
-
79959946634
-
Zea mays iRS1563: A comprehensive genome-scale metabolic reconstruction of maize metabolism
-
CrossRef PubMed
-
Saha, R., Suthers, P. F. and Maranas, C. D. (2011) Zea mays iRS1563: A comprehensive genome-scale metabolic reconstruction of maize metabolism. PLoS ONE 6, e21784 CrossRef PubMed
-
(2011)
PLoS ONE
, vol.6
, pp. e21784
-
-
Saha, R.1
Suthers, P.F.2
Maranas, C.D.3
-
87
-
-
84856015478
-
Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity
-
CrossRef PubMed
-
Mintz-Oron, S., Meir, S., Malitsky, S., Ruppin, E., Aharoni, A. and Shlomi, T. (2012) Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity. Proc. Natl. Acad. Sci. U.S.A. 109, 339-344 CrossRef PubMed
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 339-344
-
-
Mintz-Oron, S.1
Meir, S.2
Malitsky, S.3
Ruppin, E.4
Aharoni, A.5
Shlomi, T.6
-
88
-
-
84877353490
-
A metabolite-centric view on flux distributions in genome-scale metabolic models
-
CrossRef PubMed
-
Riemer, S. A., Rex, R. and Schomburg, D. (2013) A metabolite-centric view on flux distributions in genome-scale metabolic models. BMC Syst. Biol. 7, 33 CrossRef PubMed
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 33
-
-
Riemer, S.A.1
Rex, R.2
Schomburg, D.3
-
90
-
-
70350676551
-
A genome-scale metabolic model of Arabidopsis and some of its properties
-
CrossRef PubMed
-
Poolman, M. G., Miguet, L., Sweelove, L. J. and Fell, D. A. (2009) A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol. 151, 1570-1581 CrossRef PubMed
-
(2009)
Plant Physiol.
, vol.151
, pp. 1570-1581
-
-
Poolman, M.G.1
Miguet, L.2
Sweelove, L.J.3
Fell, D.A.4
-
91
-
-
0001154667
-
Cytosolic cycles regulate the turnover of sucrose in heterotrophic cell suspension cultures of Chenopodium rubrum L
-
CrossRef PubMed
-
Dancer, J., Hatzfield, W. D. and Stitt, M. (1990) Cytosolic cycles regulate the turnover of sucrose in heterotrophic cell suspension cultures of Chenopodium rubrum L. Planta 182, 223-231 CrossRef PubMed
-
(1990)
Planta
, vol.182
, pp. 223-231
-
-
Dancer, J.1
Hatzfield, W.D.2
Stitt, M.3
-
92
-
-
34249922554
-
A futile cycle of sucrose synthesis and degradation is involved in regulating partitioning between sucrose, starch and respiration in cotyledons of germinating Ricinus communis L seedlings when phloem transport is inhibited
-
PubMed
-
Geigenberger, P. and Stitt, M. (1991) A futile cycle of sucrose synthesis and degradation is involved in regulating partitioning between sucrose, starch and respiration in cotyledons of germinating Ricinus communis L seedlings when phloem transport is inhibited. Planta 185, 81-90 PubMed
-
(1991)
Planta
, vol.185
, pp. 81-90
-
-
Geigenberger, P.1
Stitt, M.2
-
94
-
-
78650554169
-
Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering
-
CrossRef PubMed
-
Alonso, A. P., Val, D. L. and Shachar-Hill, Y. (2011) Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering. Metab. Eng. 13, 96-107 CrossRef PubMed
-
(2011)
Metab. Eng.
, vol.13
, pp. 96-107
-
-
Alonso, A.P.1
Val, D.L.2
Shachar-Hill, Y.3
-
95
-
-
0035212573
-
Metabolic consequences of altered phosphoenolpyruvate carboxykinase activity in Corynebacterium glutamicum reveal anaplerotic regulation mechanisms in vivo
-
CrossRef PubMed
-
Petersen, S., Mack, C., de Graaf, A. A., Riedel, C., Eikmanns, B. J. and Sahm, H. (2001) Metabolic consequences of altered phosphoenolpyruvate carboxykinase activity in Corynebacterium glutamicum reveal anaplerotic regulation mechanisms in vivo. Metab. Eng. 3, 344-361 CrossRef PubMed
-
(2001)
Metab. Eng.
, vol.3
, pp. 344-361
-
-
Petersen, S.1
Mack, C.2
De Graaf, A.A.3
Riedel, C.4
Eikmanns, B.J.5
Sahm, H.6
-
96
-
-
34547652831
-
Vacuolar compartmentation complicates the steady-state analysis of glucose metabolism and forces reappraisal of sucrose cycling in plants
-
CrossRef PubMed
-
Kruger, N. J., Le Lay, P. and Ratcliffe, R. G. (2007) Vacuolar compartmentation complicates the steady-state analysis of glucose metabolism and forces reappraisal of sucrose cycling in plants. Phytochemistry 68, 2189-2196 CrossRef PubMed
-
(2007)
Phytochemistry
, vol.68
, pp. 2189-2196
-
-
Kruger, N.J.1
Le Lay, P.2
Ratcliffe, R.G.3
-
98
-
-
84859344704
-
Insights into metabolic efficiency from flux analysis
-
CrossRef PubMed
-
Chen, X. and Shachar-Hill, Y. (2012) Insights into metabolic efficiency from flux analysis. J. Exp. Bot. 63, 2343-2351 CrossRef PubMed
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 2343-2351
-
-
Chen, X.1
Shachar-Hill, Y.2
-
99
-
-
77955804943
-
Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis
-
CrossRef PubMed
-
Alonso, A. P., Dale, V. L. and Shachar-Hill, Y. (2010) Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis. Metab. Eng. 12, 488-497 CrossRef PubMed
-
(2010)
Metab. Eng.
, vol.12
, pp. 488-497
-
-
Alonso, A.P.1
Dale, V.L.2
Shachar-Hill, Y.3
-
100
-
-
33644666535
-
Light enables a very high efficiency of carbon storage in developing embryos of rapeseed
-
CrossRef PubMed
-
Goffman, F. D., Alonso, A. P., Schwender, J., Shachar-Hill, Y. and Ohlrogge, J. B. (2005) Light enables a very high efficiency of carbon storage in developing embryos of rapeseed. Plant Physiol. 138, 2269-2279 CrossRef PubMed
-
(2005)
Plant Physiol.
, vol.138
, pp. 2269-2279
-
-
Goffman, F.D.1
Alonso, A.P.2
Schwender, J.3
Shachar-Hill, Y.4
Ohlrogge, J.B.5
-
102
-
-
84903618202
-
Bottom-up metabolic reconstruction of Arabidopsis thaliana and its application to determining the metabolic costs of enzyme production
-
CrossRef PubMed
-
Arnold, A. and Nikoloski, Z. (2014) Bottom-up metabolic reconstruction of Arabidopsis thaliana and its application to determining the metabolic costs of enzyme production. Plant Physiol. 165, 1380-1391 CrossRef PubMed
-
(2014)
Plant Physiol.
, vol.165
, pp. 1380-1391
-
-
Arnold, A.1
Nikoloski, Z.2
-
103
-
-
84879377643
-
4 photosynthesis evolution: Modular, individually adaptive steps on a Mount Fuji fitness landscape
-
CrossRef PubMed
-
4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape. Cell 153, 1579-1588 CrossRef PubMed
-
(2013)
Cell
, vol.153
, pp. 1579-1588
-
-
Heckmann, D.1
Schulze, S.2
Denton, A.3
Gowik, U.4
Westhoff, P.5
Weber, A.P.M.6
Lercher, M.J.7
-
104
-
-
84857137366
-
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
-
CrossRef PubMed
-
Nogales, J., Gudmundsson, S., Knight, E. M., Palsson, B. O. and Thiele, I. (2012) Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis. Proc. Natl. Acad. Sci. U.S.A. 109, 2678-2683 CrossRef PubMed
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 2678-2683
-
-
Nogales, J.1
Gudmundsson, S.2
Knight, E.M.3
Palsson, B.O.4
Thiele, I.5
-
105
-
-
80051537012
-
Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism
-
CrossRef PubMed
-
Chang, R. L., Ghamsari, L., Manichaikul, A., Hom, E. F. Y., Balaji, S., Fu, W., Shen, Y., Hao, T., Palsson, B. O., Salehi-Ashtiani, K. and Papin, J. A. (2011) Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. Mol. Syst. Biol. 7, 518 CrossRef PubMed
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 518
-
-
Chang, R.L.1
Ghamsari, L.2
Manichaikul, A.3
Hom, E.F.Y.4
Balaji, S.5
Fu, W.6
Shen, Y.7
Hao, T.8
Palsson, B.O.9
Salehi-Ashtiani, K.10
Papin, J.A.11
-
106
-
-
84879517799
-
Flux balance analysis of cyanobacterial metabolism: The metabolic network of Synechocystis sp. PCC 6803
-
CrossRef PubMed
-
Knoop, H., Gründel, M., Zilliges, Y., Lehmann, R., Hoffmann, S., Lockau, W. and Steuer, R. (2013) Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803. PLoS Comput. Biol. 9, e1003081 CrossRef PubMed
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1003081
-
-
Knoop, H.1
Gründel, M.2
Zilliges, Y.3
Lehmann, R.4
Hoffmann, S.5
Lockau, W.6
Steuer, R.7
-
107
-
-
77949333953
-
2 assimilation in illuminated leaves of Brassica napus
-
CrossRef PubMed
-
2 assimilation in illuminated leaves of Brassica napus. New Phytol. 185, 988-999 CrossRef PubMed
-
(2010)
New Phytol.
, vol.185
, pp. 988-999
-
-
Gauthier, P.P.G.1
Bligny, R.2
Gout, E.3
Mahé, A.4
Nogués, S.5
Hodges, M.6
Tcherkez, G.G.B.7
-
108
-
-
84865801956
-
Towards high throughput metabolic flux analysis in plants
-
CrossRef PubMed
-
Huege, J., Poskar, C. H., Franke, M. and Junker, B. H. (2012) Towards high throughput metabolic flux analysis in plants. Mol. BioSyst. 8, 2466-2469 CrossRef PubMed
-
(2012)
Mol. BioSyst.
, vol.8
, pp. 2466-2469
-
-
Huege, J.1
Poskar, C.H.2
Franke, M.3
Junker, B.H.4
-
109
-
-
84934442089
-
High-throughput data pipelines for metabolic flux analysis in plants
-
Plant Metabolic Flux Analysis: Methods and Protocols (Dieuaide-Noubhani, M. and Alonso, A. P., eds), Humana Press, New York
-
Poskar, C. H., Huege, J., Krach, C., Shachar-Hill, Y. and Junker, B. H. (2014) High-throughput data pipelines for metabolic flux analysis in plants. In Plant Metabolic Flux Analysis: Methods and Protocols (Dieuaide-Noubhani, M. and Alonso, A. P., eds), Methods in Molecular Biology, vol. 1090, pp. 223-246, Humana Press, New York
-
(2014)
Methods in Molecular Biology
, vol.1090
, pp. 223-246
-
-
Poskar, C.H.1
Huege, J.2
Krach, C.3
Shachar-Hill, Y.4
Junker, B.H.5
-
110
-
-
84896731085
-
Flux analysis in plant metabolic networks: Increasing throughput and coverage
-
CrossRef PubMed
-
Junker, B. H. (2014) Flux analysis in plant metabolic networks: increasing throughput and coverage. Curr. Opin. Biotechnol. 26, 183-188 CrossRef PubMed
-
(2014)
Curr. Opin. Biotechnol.
, vol.26
, pp. 183-188
-
-
Junker, B.H.1
-
112
-
-
50349092706
-
Kinetic flux profiling for quantitation of cellular metabolic fluxes
-
CrossRef PubMed
-
Yuan, J., Bennett, B. D. and Rabinowitz, J. D. (2008) Kinetic flux profiling for quantitation of cellular metabolic fluxes. Nat. Protoc. 3, 1328-1340 CrossRef PubMed
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1328-1340
-
-
Yuan, J.1
Bennett, B.D.2
Rabinowitz, J.D.3
-
113
-
-
84905034287
-
Flux profiling of photosynthetic carbon metabolism in intact plants
-
CrossRef PubMed
-
Heise, R., Arrivault, S., Szecowka, M., Tohge, T., Nunes-Nesi, A., Stitt, M., Nikoloski, Z. and Fernie, A. R. (2014) Flux profiling of photosynthetic carbon metabolism in intact plants. Nat. Protoc. 9, 1803-1824 CrossRef PubMed
-
(2014)
Nat. Protoc.
, vol.9
, pp. 1803-1824
-
-
Heise, R.1
Arrivault, S.2
Szecowka, M.3
Tohge, T.4
Nunes-Nesi, A.5
Stitt, M.6
Nikoloski, Z.7
Fernie, A.R.8
-
114
-
-
84897461537
-
Systems analysis of metabolic phenotypes: What have we learnt?
-
CrossRef PubMed
-
Sweetlove, L. J., Obata, T. and Fernie, A. R. (2014) Systems analysis of metabolic phenotypes: what have we learnt? Trends Plant Sci. 19, 222-230 CrossRef PubMed
-
(2014)
Trends Plant Sci.
, vol.19
, pp. 222-230
-
-
Sweetlove, L.J.1
Obata, T.2
Fernie, A.R.3
-
115
-
-
84934438759
-
Isotopically nonstationary MFA (INST-MFA) of autotrophic metabolism
-
Plant Metabolic Flux Analysis: Methods and Protocols (Dieuaide-Noubhani, M. and Alonso, A. P., eds), Humana Press, New York
-
Jazmin, L. J., O'Grady, J. P., Ma, F., Allen, D. K., Morgan, J. A. and Young, J. D. (2014) Isotopically nonstationary MFA (INST-MFA) of autotrophic metabolism. In Plant Metabolic Flux Analysis: Methods and Protocols (Dieuaide-Noubhani, M. and Alonso, A. P., eds), Methods in Molecular Biology, vol. 1090, pp. 181-210, Humana Press, New York
-
(2014)
Methods in Molecular Biology
, vol.1090
, pp. 181-210
-
-
Jazmin, L.J.1
O'Grady, J.P.2
Ma, F.3
Allen, D.K.4
Morgan, J.A.5
Young, J.D.6
-
116
-
-
84900871701
-
Mass spectrometry based imaging techniques for spatially resolved analysis of molecules
-
CrossRef PubMed
-
Matros, A. and Mock, H. P. (2013) Mass spectrometry based imaging techniques for spatially resolved analysis of molecules. Front. Plant Sci. 4, 89 CrossRef PubMed
-
(2013)
Front. Plant Sci.
, vol.4
, pp. 89
-
-
Matros, A.1
Mock, H.P.2
-
117
-
-
84859121620
-
Surveying the plant's world by magnetic resonance imaging
-
CrossRef PubMed
-
Borisjuk, L., Rolletschek, H. and Neuberger, T. (2012) Surveying the plant's world by magnetic resonance imaging. Plant J. 70, 129-146 CrossRef PubMed
-
(2012)
Plant J.
, vol.70
, pp. 129-146
-
-
Borisjuk, L.1
Rolletschek, H.2
Neuberger, T.3
-
118
-
-
80053207269
-
1H NMR imahing uncovers sugar allocation in the living seed
-
CrossRef
-
1H NMR imahing uncovers sugar allocation in the living seed. Plant Biotech. J. 9, 1022-1037 CrossRef
-
(2011)
Plant Biotech. J.
, vol.9
, pp. 1022-1037
-
-
Melkus, G.1
Rolletschek, H.2
Fuchs, J.3
Radchuk, V.4
Grafahrend-Belau, E.5
Sreenivasulu, N.6
Rutten, T.7
Weier, D.8
Heinzel, N.9
Schreiber, F.10
-
120
-
-
38149109010
-
A high-resolution root spatiotemporal map reveals dominant expression patterns
-
CrossRef PubMed
-
Brady, S. M., Orlando, D. A., Lee, J. Y., Wang, J. Y., Koch, J., Dinneny, J. R., Mace, D., Ohler, U. and Benfey, P. N. (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 318, 801-806 CrossRef PubMed
-
(2007)
Science
, vol.318
, pp. 801-806
-
-
Brady, S.M.1
Orlando, D.A.2
Lee, J.Y.3
Wang, J.Y.4
Koch, J.5
Dinneny, J.R.6
Mace, D.7
Ohler, U.8
Benfey, P.N.9
-
121
-
-
84875483881
-
High-resolution metabolic mapping of cell types in plant roots
-
CrossRef PubMed
-
Moussaieff, A., Rogachev, I., Brodsky, L., Malitsky, S., Toal, T. W., Belcher, H., Yativ, M., Brady, S. M., Benfey, P. N. and Aharoni, A. (2013) High-resolution metabolic mapping of cell types in plant roots. Proc. Natl. Acad. Sci. U.S.A. 110, E1232-E1241 CrossRef PubMed
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. E1232-E1241
-
-
Moussaieff, A.1
Rogachev, I.2
Brodsky, L.3
Malitsky, S.4
Toal, T.W.5
Belcher, H.6
Yativ, M.7
Brady, S.M.8
Benfey, P.N.9
Aharoni, A.10
-
122
-
-
84913570630
-
A detailed view on sulphur metabolism at the cellular and whole-plant level illustrates challenges in metabolite flux analyses
-
Rennenberg, H. and Herschbach, C. (2014) A detailed view on sulphur metabolism at the cellular and whole-plant level illustrates challenges in metabolite flux analyses. J. Exp. Bot., doi:10.1093/jxb/eru315
-
(2014)
J. Exp. Bot.
-
-
Rennenberg, H.1
Herschbach, C.2
-
123
-
-
84878983702
-
Systems-integration of plant metabolism: Means, motive and opportunity
-
CrossRef PubMed
-
Stitt, M. (2013) Systems-integration of plant metabolism: means, motive and opportunity. Curr. Opin. Plant Biol. 16, 381-388 CrossRef PubMed
-
(2013)
Curr. Opin. Plant Biol.
, vol.16
, pp. 381-388
-
-
Stitt, M.1
-
124
-
-
84887093056
-
A system dynamics model integrating physiology and biochemical regulation predicts extent of crassulacean acid metabolism (CAM) phases
-
CrossRef PubMed
-
Owen, N. A. and Griffiths, H. (2013) A system dynamics model integrating physiology and biochemical regulation predicts extent of crassulacean acid metabolism (CAM) phases. New Phytol. 200, 1116-1131 CrossRef PubMed
-
(2013)
New Phytol.
, vol.200
, pp. 1116-1131
-
-
Owen, N.A.1
Griffiths, H.2
-
125
-
-
84907915031
-
Multiscale digital Arabidopsis predicts individual organ and whole-organism growth
-
CrossRef PubMed
-
Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. L., de Reffye, P. et al. (2014) Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proc. Natl. Acad. Sci. U.S.A. 111, E4127-E4136 CrossRef PubMed
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E4127-E4136
-
-
Chew, Y.H.1
Wenden, B.2
Flis, A.3
Mengin, V.4
Taylor, J.5
Davey, C.L.6
Tindal, C.7
Thomas, H.8
Ougham, H.L.9
De Reffye, P.10
|