-
2
-
-
0000180202
-
Uptake and utilization of sugars in cultured rice cells
-
Amino SI, Tazawa M (1988) Uptake and utilization of sugars in cultured rice cells. Plant Cell Physiol 29: 483-487
-
(1988)
Plant Cell Physiol
, vol.29
, pp. 483-487
-
-
Amino, S.I.1
Tazawa, M.2
-
3
-
-
57149111077
-
The crucial role of plant mitochondria in orchestrating drought tolerance
-
Atkin OK, Macherel D (2009) The crucial role of plant mitochondria in orchestrating drought tolerance. Ann Bot (Lond) 103: 581-597
-
(2009)
Ann Bot (Lond)
, vol.103
, pp. 581-597
-
-
Atkin, O.K.1
Macherel, D.2
-
4
-
-
77956982084
-
The effect of oxygen and turbulence on elongation of coleoptiles of submergence-tolerant and submergenceintolerant rice cultivars
-
Atwell BJ, Waters I, Greenway H (1982) The effect of oxygen and turbulence on elongation of coleoptiles of submergence-tolerant and submergenceintolerant rice cultivars. J Exp Bot 33: 1030-1044
-
(1982)
J Exp Bot
, vol.33
, pp. 1030-1044
-
-
Atwell, B.J.1
Waters, I.2
Greenway, H.3
-
5
-
-
44949119488
-
Flooding stress: Acclimations and genetic diversity
-
Bailey-Serres J, Voesenek LA (2008) Flooding stress: acclimations and genetic diversity. Annu Rev Plant Biol 59: 313-339
-
(2008)
Annu Rev Plant Biol
, vol.59
, pp. 313-339
-
-
Bailey-Serres, J.1
Voesenek, L.A.2
-
7
-
-
42449118081
-
Drought stress and reactive oxygen species
-
de Carvalho MHC (2008) Drought stress and reactive oxygen species. Plant Signal Behav 3: 156-165
-
(2008)
Plant Signal Behav
, vol.3
, pp. 156-165
-
-
de Carvalho, M.H.C.1
-
8
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, et al (2012) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 40: D742-D753
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
Fulcher, C.A.4
Subhraveti, P.5
Keseler, I.M.6
Kothari, A.7
Krummenacker, M.8
Latendresse, M.9
Mueller, L.A.10
-
9
-
-
84880980543
-
Genome-scale in silico modeling and analysis for designing synthetic terpenoid-producing microbial cell factories
-
(in press)
-
Chung BK-S, Lakshmanan M, Klement M, Mohanty B, Lee DY (2013) Genome-scale in silico modeling and analysis for designing synthetic terpenoid-producing microbial cell factories. Chem Eng Sci (in press)
-
(2013)
Chem Eng Sci
-
-
Chung, B.K.-S.1
Lakshmanan, M.2
Klement, M.3
Mohanty, B.4
Lee, D.Y.5
-
10
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
Covert MW, Schilling CH, Palsson B (2001) Regulation of gene expression in flux balance models of metabolism. J Theor Biol 213: 73-88
-
(2001)
J Theor Biol
, vol.213
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
11
-
-
75949088191
-
AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis
-
de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK (2010a) AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis. Plant Physiol 152: 579-589
-
(2010)
Plant Physiol
, vol.152
, pp. 579-589
-
-
de Oliveira Dal'Molin, C.G.1
Quek, L.E.2
Palfreyman, R.W.3
Brumbley, S.M.4
Nielsen, L.K.5
-
12
-
-
78649796264
-
C4GEM, a genome-scale metabolic model to study C4 plant metabolism
-
de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK (2010b) C4GEM, a genome-scale metabolic model to study C4 plant metabolism. Plant Physiol 154: 1871-1885
-
(2010)
Plant Physiol
, vol.154
, pp. 1871-1885
-
-
de Oliveira Dal'Molin, C.G.1
Quek, L.E.2
Palfreyman, R.W.3
Brumbley, S.M.4
Nielsen, L.K.5
-
13
-
-
84866650808
-
Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis
-
Edwards JM, Roberts TH, Atwell BJ (2012) Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis. J Exp Bot 63: 4389-4402
-
(2012)
J Exp Bot
, vol.63
, pp. 4389-4402
-
-
Edwards, J.M.1
Roberts, T.H.2
Atwell, B.J.3
-
14
-
-
0036001069
-
Metabolic modelling of microbes: The flux-balance approach
-
Edwards JS, Covert M, Palsson B (2002) Metabolic modelling of microbes: the flux-balance approach. Environ Microbiol 4: 133-140
-
(2002)
Environ Microbiol
, vol.4
, pp. 133-140
-
-
Edwards, J.S.1
Covert, M.2
Palsson, B.3
-
15
-
-
33745458212
-
The effects of drought in plant respiration
-
In H Lambers, ed, Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Flexas J Galmes J, Ribas-Carbo M, Medrano H (2005) The effects of drought in plant respiration. In H Lambers, ed, Advances in Photosynthesis and Respiration, Vol 18. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 85-94
-
(2005)
Advances in Photosynthesis and Respiration
, vol.18
, pp. 85-94
-
-
Flexas, J.1
Galmes, J.2
Ribas-Carbo, M.3
Medrano, H.4
-
16
-
-
0034064331
-
Regulation of alcoholic fermentation in coleoptiles of two rice cultivars differing in tolerance to anoxia
-
Gibbs J, Morrel S, Valdez A, Setter TL, Greenway H (2000) Regulation of alcoholic fermentation in coleoptiles of two rice cultivars differing in tolerance to anoxia. J Exp Bot 51: 785-796
-
(2000)
J Exp Bot
, vol.51
, pp. 785-796
-
-
Gibbs, J.1
Morrel, S.2
Valdez, A.3
Setter, T.L.4
Greenway, H.5
-
17
-
-
58449106341
-
Flux balance analysis of barley seeds: A computational approach to study systemic properties of central metabolism
-
Grafahrend-Belau E, Schreiber F, Koschutzki D, Junker BH (2009) Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol 149: 585-598
-
(2009)
Plant Physiol
, vol.149
, pp. 585-598
-
-
Grafahrend-Belau, E.1
Schreiber, F.2
Koschutzki, D.3
Junker, B.H.4
-
18
-
-
0028878441
-
Effect of anoxia on carbohydrate metabolism in rice seedlings
-
Guglielminetti L, Perata P, Alpi A (1995) Effect of anoxia on carbohydrate metabolism in rice seedlings. Plant Physiol 108: 735-741
-
(1995)
Plant Physiol
, vol.108
, pp. 735-741
-
-
Guglielminetti, L.1
Perata, P.2
Alpi, A.3
-
19
-
-
0027132883
-
On the function of mitochondrial metabolism during photosynthesis in spinach (Spinacia oleracea L.) leaves: Partitioning between respiration and export of redox equivalents and precursors for nitrate assimilation products
-
Hanning I, Heldt HW (1993) On the function of mitochondrial metabolism during photosynthesis in spinach (Spinacia oleracea L.) leaves: partitioning between respiration and export of redox equivalents and precursors for nitrate assimilation products. Plant Physiol 103: 1147-1154
-
(1993)
Plant Physiol
, vol.103
, pp. 1147-1154
-
-
Hanning, I.1
Heldt, H.W.2
-
20
-
-
79960906784
-
Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos
-
Hay J, Schwender J (2011) Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos. Plant J 67: 526-541
-
(2011)
Plant J
, vol.67
, pp. 526-541
-
-
Hay, J.1
Schwender, J.2
-
21
-
-
84880990807
-
In the photorespiratory pathway phosphoglycolate formed by the oxygenase activity of Rubisco is recycled
-
In. Academic Press, London
-
Heldt H-W, Piechulla B (2011) In the photorespiratory pathway phosphoglycolate formed by the oxygenase activity of Rubisco is recycled. In Plant Biochemistry. Academic Press, London, pp 193-209
-
(2011)
Plant Biochemistry
, pp. 193-209
-
-
Heldt, H.-W.1
Piechulla, B.2
-
22
-
-
0037238908
-
Physiological and molecular basis of susceptibility and tolerance of rice plants to complete submergence
-
Jackson MB, Ram PC (2003) Physiological and molecular basis of susceptibility and tolerance of rice plants to complete submergence. Ann Bot (Lond) 91: 227-241
-
(2003)
Ann Bot (Lond)
, vol.91
, pp. 227-241
-
-
Jackson, M.B.1
Ram, P.C.2
-
23
-
-
84873117349
-
Systems biology-based approaches toward understanding drought tolerance in food crops
-
Jogaiah S, Govind SR, Tran LS (2012) Systems biology-based approaches toward understanding drought tolerance in food crops. Crit Rev Biotechnol 33: 23-39
-
(2012)
Crit Rev Biotechnol
, vol.33
, pp. 23-39
-
-
Jogaiah, S.1
Govind, S.R.2
Tran, L.S.3
-
24
-
-
0000081033
-
2 specificity of ribulose 1,5-bisphosphate carboxylase/oxygenase
-
2 specificity of ribulose 1,5-bisphosphate carboxylase/oxygenase. Planta 161: 308-313
-
(1984)
Planta
, vol.161
, pp. 308-313
-
-
Jordan, D.B.1
Ogren, W.L.2
-
25
-
-
0001926761
-
Rice hull and rice straw
-
In BO Juliano, ed, Ed 2. American Association of Cereal Chemists, St. Paul
-
Juliano BO (1985) Rice hull and rice straw. In BO Juliano, ed, Rice: Chemistry and Technology, Ed 2. American Association of Cereal Chemists, St. Paul, p 699
-
(1985)
Rice: Chemistry and Technology
, pp. 699
-
-
Juliano, B.O.1
-
26
-
-
0001726773
-
Chloroplast response to low leaf water potentials. III. Differing inhibition of electron transport and photophosphorylation
-
Keck RW, Boyer JS (1974) Chloroplast response to low leaf water potentials. III. Differing inhibition of electron transport and photophosphorylation. Plant Physiol 53: 474-479
-
(1974)
Plant Physiol
, vol.53
, pp. 474-479
-
-
Keck, R.W.1
Boyer, J.S.2
-
27
-
-
84856954298
-
Adsorptive loss of secreted recombinant proteins in transgenic rice cell suspension cultures
-
Kwon JY, Lee KH, Chen SH, Ryu HN, Kim SJ, Kim DI (2012) Adsorptive loss of secreted recombinant proteins in transgenic rice cell suspension cultures. Plant Cell Rep 31: 551-560
-
(2012)
Plant Cell Rep
, vol.31
, pp. 551-560
-
-
Kwon, J.Y.1
Lee, K.H.2
Chen, S.H.3
Ryu, H.N.4
Kim, S.J.5
Kim, D.I.6
-
28
-
-
0032720694
-
The dual function of sugar carriers: Transport and sugar sensing
-
Lalonde S, Boles E, Hellmann H, Barker L, Patrick JW, Frommer WB, Ward JM (1999) The dual function of sugar carriers: transport and sugar sensing. Plant Cell 11: 707-726
-
(1999)
Plant Cell
, vol.11
, pp. 707-726
-
-
Lalonde, S.1
Boles, E.2
Hellmann, H.3
Barker, L.4
Patrick, J.W.5
Frommer, W.B.6
Ward, J.M.7
-
29
-
-
20644467467
-
Systems biotechnology for strain improvement
-
Lee SY, Lee DY, Kim TY (2005) Systems biotechnology for strain improvement. Trends Biotechnol 23: 349-358
-
(2005)
Trends Biotechnol
, vol.23
, pp. 349-358
-
-
Lee, S.Y.1
Lee, D.Y.2
Kim, T.Y.3
-
30
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
Lewis NE, Nagarajan H, Palsson BO (2012) Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol 10: 291-305
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
31
-
-
58549120363
-
Rice germination and seedling growth in the absence of oxygen
-
Magneschi L, Perata P (2009) Rice germination and seedling growth in the absence of oxygen. Ann Bot (Lond) 103: 181-196
-
(2009)
Ann Bot (Lond)
, vol.103
, pp. 181-196
-
-
Magneschi, L.1
Perata, P.2
-
32
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic model
-
Mahadevan R, Schilling CH (2003) The effects of alternate optimal solutions in constraint-based genome-scale metabolic model. Metab Eng 5: 264-276
-
(2003)
Metab Eng
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
33
-
-
84856015478
-
Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity
-
Mintz-Oron S, Meir S, Malitsky S, Ruppin E, Aharoni A, Shlomi T (2012) Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity. Proc Natl Acad Sci USA 109: 339-344
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 339-344
-
-
Mintz-Oron, S.1
Meir, S.2
Malitsky, S.3
Ruppin, E.4
Aharoni, A.5
Shlomi, T.6
-
34
-
-
0002550523
-
Effects of anoxia on growth and carbohydrate-metabolism in suspension-cultures of soybean and rice
-
Mohanty B, Wilson PM, Aprees T (1993) Effects of anoxia on growth and carbohydrate-metabolism in suspension-cultures of soybean and rice. Phytochemistry 34: 75-82
-
(1993)
Phytochemistry
, vol.34
, pp. 75-82
-
-
Mohanty, B.1
Wilson, P.M.2
Aprees, T.3
-
35
-
-
84881000491
-
Who eats the most rice?
-
International Rice Research Institute, Metro Manila, Philippines
-
Nelson A (2011) Who eats the most rice? In Rice Today, Vol 10. International Rice Research Institute, Metro Manila, Philippines, pp 44-45
-
(2011)
In Rice Today
, vol.10
, pp. 44-45
-
-
Nelson, A.1
-
36
-
-
65649126411
-
Flux balance analysis: Interrogating genome-scale metabolic networks
-
Oberhardt MA, Chavali AK, Papin JA (2009) Flux balance analysis: interrogating genome-scale metabolic networks. Methods Mol Biol 500: 61-80
-
(2009)
Methods Mol Biol
, vol.500
, pp. 61-80
-
-
Oberhardt, M.A.1
Chavali, A.K.2
Papin, J.A.3
-
37
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 27: 29-34
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
39
-
-
0027130342
-
Plant responses to anaerobiosis
-
Perata P, Alpi A (1993) Plant responses to anaerobiosis. Plant Sci 93: 1-17
-
(1993)
Plant Sci
, vol.93
, pp. 1-17
-
-
Perata, P.1
Alpi, A.2
-
40
-
-
77949497909
-
The missing link in plant histidine biosynthesis: Arabidopsis myoinositol monophosphatase-like2 encodes a functional histidinol-phosphate phosphatase
-
Petersen LN, Marineo S, Mandala S, Davids F, Sewell BT, Ingle RA (2010) The missing link in plant histidine biosynthesis: Arabidopsis myoinositol monophosphatase-like2 encodes a functional histidinol-phosphate phosphatase. Plant Physiol 152: 1186-1196
-
(2010)
Plant Physiol
, vol.152
, pp. 1186-1196
-
-
Petersen, L.N.1
Marineo, S.2
Mandala, S.3
Davids, F.4
Sewell, B.T.5
Ingle, R.A.6
-
41
-
-
79956137349
-
An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism
-
Pilalis E, Chatziioannou A, Thomasset B, Kolisis F (2011) An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism. Biotechnol Bioeng 108: 1673-1682
-
(2011)
Biotechnol Bioeng
, vol.108
, pp. 1673-1682
-
-
Pilalis, E.1
Chatziioannou, A.2
Thomasset, B.3
Kolisis, F.4
-
42
-
-
70350676551
-
A genome-scale metabolic model of Arabidopsis and some of its properties
-
Poolman MG, Miguet L, Sweetlove LJ, Fell DA (2009) A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol 151: 1570-1581
-
(2009)
Plant Physiol
, vol.151
, pp. 1570-1581
-
-
Poolman, M.G.1
Miguet, L.2
Sweetlove, L.J.3
Fell, D.A.4
-
43
-
-
81255151148
-
Influence of abiotic stress signals on secondary metabolites in plants
-
Ramakrishna A, Ravishankar GA (2011) Influence of abiotic stress signals on secondary metabolites in plants. Plant Signal Behav 6: 1720-1731
-
(2011)
Plant Signal Behav
, vol.6
, pp. 1720-1731
-
-
Ramakrishna, A.1
Ravishankar, G.A.2
-
44
-
-
79959946634
-
Zea mays iRS1563: A comprehensive genome-scale metabolic reconstruction of maize metabolism
-
Saha R, Suthers PF, Maranas CD (2011) Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism. PLoS ONE 6: e21784
-
(2011)
PLoS ONE
, vol.6
-
-
Saha, R.1
Suthers, P.F.2
Maranas, C.D.3
-
45
-
-
43449132092
-
Is maximization of molar yield in metabolic networks favoured by evolution?
-
Schuster S, Pfeiffer T, Fell DA (2008) Is maximization of molar yield in metabolic networks favoured by evolution? J Theor Biol 252: 497-504
-
(2008)
J Theor Biol
, vol.252
, pp. 497-504
-
-
Schuster, S.1
Pfeiffer, T.2
Fell, D.A.3
-
46
-
-
84859367668
-
Frontiers in metabolic reconstruction and modeling of plant genomes
-
Seaver SM, Henry CS, Hanson AD (2012) Frontiers in metabolic reconstruction and modeling of plant genomes. J Exp Bot 63: 2247-2258
-
(2012)
J Exp Bot
, vol.63
, pp. 2247-2258
-
-
Seaver, S.M.1
Henry, C.S.2
Hanson, A.D.3
-
47
-
-
0034488235
-
Sugar utilization and invertase activity in hairy-root and cell-suspension cultures of Symphytum officinale
-
Shimon-Kerner N, Mills D, Merchuk JC (2000) Sugar utilization and invertase activity in hairy-root and cell-suspension cultures of Symphytum officinale. Plant Cell Tiss Org 62: 89-94
-
(2000)
Plant Cell Tiss Org
, vol.62
, pp. 89-94
-
-
Shimon-Kerner, N.1
Mills, D.2
Merchuk, J.C.3
-
48
-
-
79961185806
-
Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance
-
Shingaki-Wells RN, Huang S, Taylor NL, Carroll AJ, Zhou W, Millar AH (2011) Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance. Plant Physiol 156: 1706-1724
-
(2011)
Plant Physiol
, vol.156
, pp. 1706-1724
-
-
Shingaki-Wells, R.N.1
Huang, S.2
Taylor, N.L.3
Carroll, A.J.4
Zhou, W.5
Millar, A.H.6
-
49
-
-
0000869187
-
Fructose 2,6-bisphosphate and plant carbohydrate metabolism
-
Stitt M (1987) Fructose 2,6-bisphosphate and plant carbohydrate metabolism. Plant Physiol 84: 201-204
-
(1987)
Plant Physiol
, vol.84
, pp. 201-204
-
-
Stitt, M.1
-
50
-
-
77955274603
-
Not just a circle: Flux modes in the plant TCA cycle
-
Sweetlove LJ, Beard KF, Nunes-Nesi A, Fernie AR, Ratcliffe RG (2010) Not just a circle: flux modes in the plant TCA cycle. Trends Plant Sci 15: 462-470
-
(2010)
Trends Plant Sci
, vol.15
, pp. 462-470
-
-
Sweetlove, L.J.1
Beard, K.F.2
Nunes-Nesi, A.3
Fernie, A.R.4
Ratcliffe, R.G.5
-
52
-
-
33845330845
-
Synthesis, export and partitioning of the end products of photosynthesis
-
In RR Wise, JK Hoober, eds, Springer, Dordrecht, The Netherlands
-
Weber APM (2007) Synthesis, export and partitioning of the end products of photosynthesis. In RR Wise, JK Hoober, eds, The Structure and Function of Plastids. Springer, Dordrecht, The Netherlands, pp 273-292
-
(2007)
The Structure and Function of Plastids
, pp. 273-292
-
-
Weber, A.P.M.1
-
53
-
-
0028796246
-
A simple and modified manometric method for measuring oxygen uptake rate of plant cells in flask cultures
-
Wen Z-Y, Zhong J-J (1995) A simple and modified manometric method for measuring oxygen uptake rate of plant cells in flask cultures. Biotechnol Tech 9: 521-526
-
(1995)
Biotechnol Tech
, vol.9
, pp. 521-526
-
-
Wen, Z.-Y.1
Zhong, J.-J.2
-
54
-
-
33747035582
-
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
-
Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442: 705-708
-
(2006)
Nature
, vol.442
, pp. 705-708
-
-
Xu, K.1
Xu, X.2
Fukao, T.3
Canlas, P.4
Maghirang-Rodriguez, R.5
Heuer, S.6
Ismail, A.M.7
Bailey-Serres, J.8
Ronald, P.C.9
Mackill, D.J.10
|