메뉴 건너뛰기




Volumn 162, Issue 4, 2013, Pages 2140-2150

Elucidating rice cell metabolism under flooding and drought stresses using flux-based modeling and analysis

Author keywords

[No Author keywords available]

Indexed keywords

ORYZA SATIVA;

EID: 84881016108     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.113.220178     Document Type: Article
Times cited : (61)

References (54)
  • 1
    • 0001837189 scopus 로고
    • 2 concentration on rice seedlings
    • 2 concentration on rice seedlings. Plant Physiol 71: 30-34
    • (1983) Plant Physiol , vol.71 , pp. 30-34
    • Alpi, A.1    Beevers, H.2
  • 2
    • 0000180202 scopus 로고
    • Uptake and utilization of sugars in cultured rice cells
    • Amino SI, Tazawa M (1988) Uptake and utilization of sugars in cultured rice cells. Plant Cell Physiol 29: 483-487
    • (1988) Plant Cell Physiol , vol.29 , pp. 483-487
    • Amino, S.I.1    Tazawa, M.2
  • 3
    • 57149111077 scopus 로고    scopus 로고
    • The crucial role of plant mitochondria in orchestrating drought tolerance
    • Atkin OK, Macherel D (2009) The crucial role of plant mitochondria in orchestrating drought tolerance. Ann Bot (Lond) 103: 581-597
    • (2009) Ann Bot (Lond) , vol.103 , pp. 581-597
    • Atkin, O.K.1    Macherel, D.2
  • 4
    • 77956982084 scopus 로고
    • The effect of oxygen and turbulence on elongation of coleoptiles of submergence-tolerant and submergenceintolerant rice cultivars
    • Atwell BJ, Waters I, Greenway H (1982) The effect of oxygen and turbulence on elongation of coleoptiles of submergence-tolerant and submergenceintolerant rice cultivars. J Exp Bot 33: 1030-1044
    • (1982) J Exp Bot , vol.33 , pp. 1030-1044
    • Atwell, B.J.1    Waters, I.2    Greenway, H.3
  • 5
    • 44949119488 scopus 로고    scopus 로고
    • Flooding stress: Acclimations and genetic diversity
    • Bailey-Serres J, Voesenek LA (2008) Flooding stress: acclimations and genetic diversity. Annu Rev Plant Biol 59: 313-339
    • (2008) Annu Rev Plant Biol , vol.59 , pp. 313-339
    • Bailey-Serres, J.1    Voesenek, L.A.2
  • 7
    • 42449118081 scopus 로고    scopus 로고
    • Drought stress and reactive oxygen species
    • de Carvalho MHC (2008) Drought stress and reactive oxygen species. Plant Signal Behav 3: 156-165
    • (2008) Plant Signal Behav , vol.3 , pp. 156-165
    • de Carvalho, M.H.C.1
  • 9
    • 84880980543 scopus 로고    scopus 로고
    • Genome-scale in silico modeling and analysis for designing synthetic terpenoid-producing microbial cell factories
    • (in press)
    • Chung BK-S, Lakshmanan M, Klement M, Mohanty B, Lee DY (2013) Genome-scale in silico modeling and analysis for designing synthetic terpenoid-producing microbial cell factories. Chem Eng Sci (in press)
    • (2013) Chem Eng Sci
    • Chung, B.K.-S.1    Lakshmanan, M.2    Klement, M.3    Mohanty, B.4    Lee, D.Y.5
  • 10
    • 0035824029 scopus 로고    scopus 로고
    • Regulation of gene expression in flux balance models of metabolism
    • Covert MW, Schilling CH, Palsson B (2001) Regulation of gene expression in flux balance models of metabolism. J Theor Biol 213: 73-88
    • (2001) J Theor Biol , vol.213 , pp. 73-88
    • Covert, M.W.1    Schilling, C.H.2    Palsson, B.3
  • 13
    • 84866650808 scopus 로고    scopus 로고
    • Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis
    • Edwards JM, Roberts TH, Atwell BJ (2012) Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis. J Exp Bot 63: 4389-4402
    • (2012) J Exp Bot , vol.63 , pp. 4389-4402
    • Edwards, J.M.1    Roberts, T.H.2    Atwell, B.J.3
  • 14
    • 0036001069 scopus 로고    scopus 로고
    • Metabolic modelling of microbes: The flux-balance approach
    • Edwards JS, Covert M, Palsson B (2002) Metabolic modelling of microbes: the flux-balance approach. Environ Microbiol 4: 133-140
    • (2002) Environ Microbiol , vol.4 , pp. 133-140
    • Edwards, J.S.1    Covert, M.2    Palsson, B.3
  • 15
    • 33745458212 scopus 로고    scopus 로고
    • The effects of drought in plant respiration
    • In H Lambers, ed, Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Flexas J Galmes J, Ribas-Carbo M, Medrano H (2005) The effects of drought in plant respiration. In H Lambers, ed, Advances in Photosynthesis and Respiration, Vol 18. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 85-94
    • (2005) Advances in Photosynthesis and Respiration , vol.18 , pp. 85-94
    • Flexas, J.1    Galmes, J.2    Ribas-Carbo, M.3    Medrano, H.4
  • 16
    • 0034064331 scopus 로고    scopus 로고
    • Regulation of alcoholic fermentation in coleoptiles of two rice cultivars differing in tolerance to anoxia
    • Gibbs J, Morrel S, Valdez A, Setter TL, Greenway H (2000) Regulation of alcoholic fermentation in coleoptiles of two rice cultivars differing in tolerance to anoxia. J Exp Bot 51: 785-796
    • (2000) J Exp Bot , vol.51 , pp. 785-796
    • Gibbs, J.1    Morrel, S.2    Valdez, A.3    Setter, T.L.4    Greenway, H.5
  • 17
    • 58449106341 scopus 로고    scopus 로고
    • Flux balance analysis of barley seeds: A computational approach to study systemic properties of central metabolism
    • Grafahrend-Belau E, Schreiber F, Koschutzki D, Junker BH (2009) Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol 149: 585-598
    • (2009) Plant Physiol , vol.149 , pp. 585-598
    • Grafahrend-Belau, E.1    Schreiber, F.2    Koschutzki, D.3    Junker, B.H.4
  • 18
    • 0028878441 scopus 로고
    • Effect of anoxia on carbohydrate metabolism in rice seedlings
    • Guglielminetti L, Perata P, Alpi A (1995) Effect of anoxia on carbohydrate metabolism in rice seedlings. Plant Physiol 108: 735-741
    • (1995) Plant Physiol , vol.108 , pp. 735-741
    • Guglielminetti, L.1    Perata, P.2    Alpi, A.3
  • 19
    • 0027132883 scopus 로고
    • On the function of mitochondrial metabolism during photosynthesis in spinach (Spinacia oleracea L.) leaves: Partitioning between respiration and export of redox equivalents and precursors for nitrate assimilation products
    • Hanning I, Heldt HW (1993) On the function of mitochondrial metabolism during photosynthesis in spinach (Spinacia oleracea L.) leaves: partitioning between respiration and export of redox equivalents and precursors for nitrate assimilation products. Plant Physiol 103: 1147-1154
    • (1993) Plant Physiol , vol.103 , pp. 1147-1154
    • Hanning, I.1    Heldt, H.W.2
  • 20
    • 79960906784 scopus 로고    scopus 로고
    • Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos
    • Hay J, Schwender J (2011) Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos. Plant J 67: 526-541
    • (2011) Plant J , vol.67 , pp. 526-541
    • Hay, J.1    Schwender, J.2
  • 21
    • 84880990807 scopus 로고    scopus 로고
    • In the photorespiratory pathway phosphoglycolate formed by the oxygenase activity of Rubisco is recycled
    • In. Academic Press, London
    • Heldt H-W, Piechulla B (2011) In the photorespiratory pathway phosphoglycolate formed by the oxygenase activity of Rubisco is recycled. In Plant Biochemistry. Academic Press, London, pp 193-209
    • (2011) Plant Biochemistry , pp. 193-209
    • Heldt, H.-W.1    Piechulla, B.2
  • 22
    • 0037238908 scopus 로고    scopus 로고
    • Physiological and molecular basis of susceptibility and tolerance of rice plants to complete submergence
    • Jackson MB, Ram PC (2003) Physiological and molecular basis of susceptibility and tolerance of rice plants to complete submergence. Ann Bot (Lond) 91: 227-241
    • (2003) Ann Bot (Lond) , vol.91 , pp. 227-241
    • Jackson, M.B.1    Ram, P.C.2
  • 23
    • 84873117349 scopus 로고    scopus 로고
    • Systems biology-based approaches toward understanding drought tolerance in food crops
    • Jogaiah S, Govind SR, Tran LS (2012) Systems biology-based approaches toward understanding drought tolerance in food crops. Crit Rev Biotechnol 33: 23-39
    • (2012) Crit Rev Biotechnol , vol.33 , pp. 23-39
    • Jogaiah, S.1    Govind, S.R.2    Tran, L.S.3
  • 24
    • 0000081033 scopus 로고
    • 2 specificity of ribulose 1,5-bisphosphate carboxylase/oxygenase
    • 2 specificity of ribulose 1,5-bisphosphate carboxylase/oxygenase. Planta 161: 308-313
    • (1984) Planta , vol.161 , pp. 308-313
    • Jordan, D.B.1    Ogren, W.L.2
  • 25
    • 0001926761 scopus 로고
    • Rice hull and rice straw
    • In BO Juliano, ed, Ed 2. American Association of Cereal Chemists, St. Paul
    • Juliano BO (1985) Rice hull and rice straw. In BO Juliano, ed, Rice: Chemistry and Technology, Ed 2. American Association of Cereal Chemists, St. Paul, p 699
    • (1985) Rice: Chemistry and Technology , pp. 699
    • Juliano, B.O.1
  • 26
    • 0001726773 scopus 로고
    • Chloroplast response to low leaf water potentials. III. Differing inhibition of electron transport and photophosphorylation
    • Keck RW, Boyer JS (1974) Chloroplast response to low leaf water potentials. III. Differing inhibition of electron transport and photophosphorylation. Plant Physiol 53: 474-479
    • (1974) Plant Physiol , vol.53 , pp. 474-479
    • Keck, R.W.1    Boyer, J.S.2
  • 27
    • 84856954298 scopus 로고    scopus 로고
    • Adsorptive loss of secreted recombinant proteins in transgenic rice cell suspension cultures
    • Kwon JY, Lee KH, Chen SH, Ryu HN, Kim SJ, Kim DI (2012) Adsorptive loss of secreted recombinant proteins in transgenic rice cell suspension cultures. Plant Cell Rep 31: 551-560
    • (2012) Plant Cell Rep , vol.31 , pp. 551-560
    • Kwon, J.Y.1    Lee, K.H.2    Chen, S.H.3    Ryu, H.N.4    Kim, S.J.5    Kim, D.I.6
  • 29
    • 20644467467 scopus 로고    scopus 로고
    • Systems biotechnology for strain improvement
    • Lee SY, Lee DY, Kim TY (2005) Systems biotechnology for strain improvement. Trends Biotechnol 23: 349-358
    • (2005) Trends Biotechnol , vol.23 , pp. 349-358
    • Lee, S.Y.1    Lee, D.Y.2    Kim, T.Y.3
  • 30
    • 84858439602 scopus 로고    scopus 로고
    • Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
    • Lewis NE, Nagarajan H, Palsson BO (2012) Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol 10: 291-305
    • (2012) Nat Rev Microbiol , vol.10 , pp. 291-305
    • Lewis, N.E.1    Nagarajan, H.2    Palsson, B.O.3
  • 31
    • 58549120363 scopus 로고    scopus 로고
    • Rice germination and seedling growth in the absence of oxygen
    • Magneschi L, Perata P (2009) Rice germination and seedling growth in the absence of oxygen. Ann Bot (Lond) 103: 181-196
    • (2009) Ann Bot (Lond) , vol.103 , pp. 181-196
    • Magneschi, L.1    Perata, P.2
  • 32
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraint-based genome-scale metabolic model
    • Mahadevan R, Schilling CH (2003) The effects of alternate optimal solutions in constraint-based genome-scale metabolic model. Metab Eng 5: 264-276
    • (2003) Metab Eng , vol.5 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.H.2
  • 33
    • 84856015478 scopus 로고    scopus 로고
    • Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity
    • Mintz-Oron S, Meir S, Malitsky S, Ruppin E, Aharoni A, Shlomi T (2012) Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity. Proc Natl Acad Sci USA 109: 339-344
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 339-344
    • Mintz-Oron, S.1    Meir, S.2    Malitsky, S.3    Ruppin, E.4    Aharoni, A.5    Shlomi, T.6
  • 34
    • 0002550523 scopus 로고
    • Effects of anoxia on growth and carbohydrate-metabolism in suspension-cultures of soybean and rice
    • Mohanty B, Wilson PM, Aprees T (1993) Effects of anoxia on growth and carbohydrate-metabolism in suspension-cultures of soybean and rice. Phytochemistry 34: 75-82
    • (1993) Phytochemistry , vol.34 , pp. 75-82
    • Mohanty, B.1    Wilson, P.M.2    Aprees, T.3
  • 35
    • 84881000491 scopus 로고    scopus 로고
    • Who eats the most rice?
    • International Rice Research Institute, Metro Manila, Philippines
    • Nelson A (2011) Who eats the most rice? In Rice Today, Vol 10. International Rice Research Institute, Metro Manila, Philippines, pp 44-45
    • (2011) In Rice Today , vol.10 , pp. 44-45
    • Nelson, A.1
  • 36
    • 65649126411 scopus 로고    scopus 로고
    • Flux balance analysis: Interrogating genome-scale metabolic networks
    • Oberhardt MA, Chavali AK, Papin JA (2009) Flux balance analysis: interrogating genome-scale metabolic networks. Methods Mol Biol 500: 61-80
    • (2009) Methods Mol Biol , vol.500 , pp. 61-80
    • Oberhardt, M.A.1    Chavali, A.K.2    Papin, J.A.3
  • 39
    • 0027130342 scopus 로고
    • Plant responses to anaerobiosis
    • Perata P, Alpi A (1993) Plant responses to anaerobiosis. Plant Sci 93: 1-17
    • (1993) Plant Sci , vol.93 , pp. 1-17
    • Perata, P.1    Alpi, A.2
  • 40
    • 77949497909 scopus 로고    scopus 로고
    • The missing link in plant histidine biosynthesis: Arabidopsis myoinositol monophosphatase-like2 encodes a functional histidinol-phosphate phosphatase
    • Petersen LN, Marineo S, Mandala S, Davids F, Sewell BT, Ingle RA (2010) The missing link in plant histidine biosynthesis: Arabidopsis myoinositol monophosphatase-like2 encodes a functional histidinol-phosphate phosphatase. Plant Physiol 152: 1186-1196
    • (2010) Plant Physiol , vol.152 , pp. 1186-1196
    • Petersen, L.N.1    Marineo, S.2    Mandala, S.3    Davids, F.4    Sewell, B.T.5    Ingle, R.A.6
  • 41
    • 79956137349 scopus 로고    scopus 로고
    • An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism
    • Pilalis E, Chatziioannou A, Thomasset B, Kolisis F (2011) An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism. Biotechnol Bioeng 108: 1673-1682
    • (2011) Biotechnol Bioeng , vol.108 , pp. 1673-1682
    • Pilalis, E.1    Chatziioannou, A.2    Thomasset, B.3    Kolisis, F.4
  • 42
    • 70350676551 scopus 로고    scopus 로고
    • A genome-scale metabolic model of Arabidopsis and some of its properties
    • Poolman MG, Miguet L, Sweetlove LJ, Fell DA (2009) A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol 151: 1570-1581
    • (2009) Plant Physiol , vol.151 , pp. 1570-1581
    • Poolman, M.G.1    Miguet, L.2    Sweetlove, L.J.3    Fell, D.A.4
  • 43
    • 81255151148 scopus 로고    scopus 로고
    • Influence of abiotic stress signals on secondary metabolites in plants
    • Ramakrishna A, Ravishankar GA (2011) Influence of abiotic stress signals on secondary metabolites in plants. Plant Signal Behav 6: 1720-1731
    • (2011) Plant Signal Behav , vol.6 , pp. 1720-1731
    • Ramakrishna, A.1    Ravishankar, G.A.2
  • 44
    • 79959946634 scopus 로고    scopus 로고
    • Zea mays iRS1563: A comprehensive genome-scale metabolic reconstruction of maize metabolism
    • Saha R, Suthers PF, Maranas CD (2011) Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism. PLoS ONE 6: e21784
    • (2011) PLoS ONE , vol.6
    • Saha, R.1    Suthers, P.F.2    Maranas, C.D.3
  • 45
    • 43449132092 scopus 로고    scopus 로고
    • Is maximization of molar yield in metabolic networks favoured by evolution?
    • Schuster S, Pfeiffer T, Fell DA (2008) Is maximization of molar yield in metabolic networks favoured by evolution? J Theor Biol 252: 497-504
    • (2008) J Theor Biol , vol.252 , pp. 497-504
    • Schuster, S.1    Pfeiffer, T.2    Fell, D.A.3
  • 46
    • 84859367668 scopus 로고    scopus 로고
    • Frontiers in metabolic reconstruction and modeling of plant genomes
    • Seaver SM, Henry CS, Hanson AD (2012) Frontiers in metabolic reconstruction and modeling of plant genomes. J Exp Bot 63: 2247-2258
    • (2012) J Exp Bot , vol.63 , pp. 2247-2258
    • Seaver, S.M.1    Henry, C.S.2    Hanson, A.D.3
  • 47
    • 0034488235 scopus 로고    scopus 로고
    • Sugar utilization and invertase activity in hairy-root and cell-suspension cultures of Symphytum officinale
    • Shimon-Kerner N, Mills D, Merchuk JC (2000) Sugar utilization and invertase activity in hairy-root and cell-suspension cultures of Symphytum officinale. Plant Cell Tiss Org 62: 89-94
    • (2000) Plant Cell Tiss Org , vol.62 , pp. 89-94
    • Shimon-Kerner, N.1    Mills, D.2    Merchuk, J.C.3
  • 48
    • 79961185806 scopus 로고    scopus 로고
    • Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance
    • Shingaki-Wells RN, Huang S, Taylor NL, Carroll AJ, Zhou W, Millar AH (2011) Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance. Plant Physiol 156: 1706-1724
    • (2011) Plant Physiol , vol.156 , pp. 1706-1724
    • Shingaki-Wells, R.N.1    Huang, S.2    Taylor, N.L.3    Carroll, A.J.4    Zhou, W.5    Millar, A.H.6
  • 49
    • 0000869187 scopus 로고
    • Fructose 2,6-bisphosphate and plant carbohydrate metabolism
    • Stitt M (1987) Fructose 2,6-bisphosphate and plant carbohydrate metabolism. Plant Physiol 84: 201-204
    • (1987) Plant Physiol , vol.84 , pp. 201-204
    • Stitt, M.1
  • 52
    • 33845330845 scopus 로고    scopus 로고
    • Synthesis, export and partitioning of the end products of photosynthesis
    • In RR Wise, JK Hoober, eds, Springer, Dordrecht, The Netherlands
    • Weber APM (2007) Synthesis, export and partitioning of the end products of photosynthesis. In RR Wise, JK Hoober, eds, The Structure and Function of Plastids. Springer, Dordrecht, The Netherlands, pp 273-292
    • (2007) The Structure and Function of Plastids , pp. 273-292
    • Weber, A.P.M.1
  • 53
    • 0028796246 scopus 로고
    • A simple and modified manometric method for measuring oxygen uptake rate of plant cells in flask cultures
    • Wen Z-Y, Zhong J-J (1995) A simple and modified manometric method for measuring oxygen uptake rate of plant cells in flask cultures. Biotechnol Tech 9: 521-526
    • (1995) Biotechnol Tech , vol.9 , pp. 521-526
    • Wen, Z.-Y.1    Zhong, J.-J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.