-
1
-
-
20644467467
-
Systems biotechnology for strain improvement
-
DOI 10.1016/j.tibtech.2005.05.003, PII S0167779905001150
-
Sang Y. L., Lee D.-Y., Tae Y. K., Systems biotechnology for strain improvement. Trends in Biotechnology 2005 23 7 349 358 2-s2.0-20644467467 10.1016/j.tibtech.2005.05.003 (Pubitemid 40835765)
-
(2005)
Trends in Biotechnology
, vol.23
, Issue.7
, pp. 349-358
-
-
Sang, Y.L.1
Lee, D.-Y.2
Tae, Y.K.3
-
2
-
-
66149122278
-
Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p
-
2-s2.0-66149122278 10.1073/pnas.0811091106
-
Moxley J. F., Jewett M. C., Antoniewicz M. R., Villas-Boas S. G., Alpera H., Wheeler R. T., Tong L., Hinnebusch A. G., Ideker T., Nielsen J., Stephanopoulos G., Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p. Proceedings of the National Academy of Sciences of the United States of America 2009 106 16 6477 6482 2-s2.0-66149122278 10.1073/pnas.0811091106
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, Issue.16
, pp. 6477-6482
-
-
Moxley, J.F.1
Jewett, M.C.2
Antoniewicz, M.R.3
Villas-Boas, S.G.4
Alpera, H.5
Wheeler, R.T.6
Tong, L.7
Hinnebusch, A.G.8
Ideker, T.9
Nielsen, J.10
Stephanopoulos, G.11
-
4
-
-
27744491124
-
13C flux analysis
-
DOI 10.1186/1475-2859-4-30
-
13C flux analysis. Microbial Cell Factories 2005 4, article 30 2-s2.0-27744491124 10.1186/1475-2859-4-30 (Pubitemid 41614835)
-
(2005)
Microbial Cell Factories
, vol.4
, pp. 30
-
-
Frick, O.1
Wittmann, C.2
-
5
-
-
77956969126
-
13C-Metabolic flux analysis for batch culture of Escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites
-
2-s2.0-77956969126 10.1002/btpr.420
-
13C-Metabolic flux analysis for batch culture of Escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites. Biotechnology Progress 2010 26 4 975 992 2-s2.0-77956969126 10.1002/btpr.420
-
(2010)
Biotechnology Progress
, vol.26
, Issue.4
, pp. 975-992
-
-
Toya, Y.1
Ishii, N.2
Nakahigashi, K.3
Hirasawa, T.4
Soga, T.5
Tomita, M.6
Shimizu, K.7
-
6
-
-
80855123905
-
13C enrichment data of free amino acids for precise metabolic flux analysis
-
2-s2.0-80855123905 10.1002/biot.201000446
-
13C enrichment data of free amino acids for precise metabolic flux analysis. Biotechnology Journal 2011 6 11 1377 1387 2-s2.0-80855123905 10.1002/biot.201000446
-
(2011)
Biotechnology Journal
, vol.6
, Issue.11
, pp. 1377-1387
-
-
Mori, E.1
Furusawa, C.2
Kajihata, S.3
Shirai, T.4
Shimizu, H.5
-
7
-
-
34447620670
-
Study on roles of anaplerotic pathways in glutamate overproduction of Corynebacterium glutamicum by metabolic flux analysis
-
DOI 10.1186/1475-2859-6-19
-
Shirai T., Fujimura K., Furusawa C., Nagahisa K., Shioya S., Shimizu H., Study on roles of anaplerotic pathways in glutamate overproduction of Corynebacterium glutamicum by metabolic flux analysis. Microbial Cell Factories 2007 6, article 19 2-s2.0-34447620670 10.1186/1475-2859-6-19 (Pubitemid 47086714)
-
(2007)
Microbial Cell Factories
, vol.6
, pp. 19
-
-
Shirai, T.1
Fujimura, K.2
Furusawa, C.3
Nagahisa, K.4
Shioya, S.5
Shimizu, H.6
-
10
-
-
77954291914
-
BioMet Toolbox: Genome-wide analysis of metabolism
-
2-s2.0-77954291914 10.1093/nar/gkq404 gkq404
-
Cvijovic M., Olivares-Hernandez R., Agren R., Dahr N., Vongsangnak W., Nookaew I., Patil K. R., Nielsen J., BioMet Toolbox: genome-wide analysis of metabolism. Nucleic Acids Research 2010 38 2 W144 W149 2-s2.0-77954291914 10.1093/nar/gkq404 gkq404
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.2
-
-
Cvijovic, M.1
Olivares-Hernandez, R.2
Agren, R.3
Dahr, N.4
Vongsangnak, W.5
Nookaew, I.6
Patil, K.R.7
Nielsen, J.8
-
11
-
-
51049091904
-
Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line
-
2-s2.0-51049091904 10.1074/jbc.M706494200
-
Yoo H., Antoniewicz M. R., Stephanopoulos G., Kelleher J. K., Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line. Journal of Biological Chemistry 2008 283 30 20621 20627 2-s2.0-51049091904 10.1074/jbc.M706494200
-
(2008)
Journal of Biological Chemistry
, vol.283
, Issue.30
, pp. 20621-20627
-
-
Yoo, H.1
Antoniewicz, M.R.2
Stephanopoulos, G.3
Kelleher, J.K.4
-
12
-
-
80053105319
-
13C metabolic flux analysis
-
2-s2.0-80053105319 10.1186/1752-0509-5-129
-
13C metabolic flux analysis. BMC Systems Biology 2011 5, article 129 2-s2.0-80053105319 10.1186/1752-0509-5-129
-
(2011)
BMC Systems Biology
, vol.5129
-
-
Srour, O.1
Young, J.D.2
Eldar, Y.C.3
-
13
-
-
84857845281
-
Influx-s: Increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments
-
2-s2.0-84857845281 10.1093/bioinformatics/btr716 btr716
-
Sokol S., Millard P., Portais J.-C., Influx-s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments. Bioinformatics 2012 28 5 687 693 2-s2.0-84857845281 10.1093/bioinformatics/btr716 btr716
-
(2012)
Bioinformatics
, vol.28
, Issue.5
, pp. 687-693
-
-
Sokol, S.1
Millard, P.2
Portais, J.-C.3
-
17
-
-
84872376676
-
13C flux analysis of Myc-induced metabolic reprogramming in B-cells
-
2-s2.0-84872376676 10.1016/j.ymben.2012.07.008
-
13C flux analysis of Myc-induced metabolic reprogramming in B-cells. Metabolic Engineering 2013 15 1 206 217 2-s2.0-84872376676 10.1016/j.ymben.2012. 07.008
-
(2013)
Metabolic Engineering
, vol.15
, Issue.1
, pp. 206-217
-
-
Murphy, T.A.1
Dang, C.V.2
Young, J.D.3
-
18
-
-
84855674607
-
LC-MS-based metabolomics
-
2-s2.0-84855674607 10.1039/c1mb05350g
-
Zhou B., Xiao J. F., Tuli L., Ressom H. W., LC-MS-based metabolomics. Molecular BioSystems 2012 8 2 470 481 2-s2.0-84855674607 10.1039/c1mb05350g
-
(2012)
Molecular BioSystems
, vol.8
, Issue.2
, pp. 470-481
-
-
Zhou, B.1
Xiao, J.F.2
Tuli, L.3
Ressom, H.W.4
-
19
-
-
84861230997
-
Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry
-
2-s2.0-84861230997 10.1007/s00216-012-6039-y
-
Vuckovic D., Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry. Analytical and Bioanalytical Chemistry 2012 403 6 1523 1548 2-s2.0-84861230997 10.1007/s00216-012-6039-y
-
(2012)
Analytical and Bioanalytical Chemistry
, vol.403
, Issue.6
, pp. 1523-1548
-
-
Vuckovic, D.1
-
20
-
-
67349204820
-
Rapid sampling devices for metabolic engineering applications
-
2-s2.0-67349204820 10.1007/s00253-009-1976-x
-
Schädel F., Franco-Lara E., Rapid sampling devices for metabolic engineering applications. Applied Microbiology and Biotechnology 2009 83 2 199 208 2-s2.0-67349204820 10.1007/s00253-009-1976-x
-
(2009)
Applied Microbiology and Biotechnology
, vol.83
, Issue.2
, pp. 199-208
-
-
Schädel, F.1
Franco-Lara, E.2
-
21
-
-
77950629593
-
Fast sampling for quantitative microbial metabolomics
-
2-s2.0-77950629593 10.1016/j.copbio.2010.01.008
-
van Gulik W. M., Fast sampling for quantitative microbial metabolomics. Current Opinion in Biotechnology 2010 21 1 27 34 2-s2.0-77950629593 10.1016/j.copbio.2010.01.008
-
(2010)
Current Opinion in Biotechnology
, vol.21
, Issue.1
, pp. 27-34
-
-
Van Gulik, W.M.1
-
22
-
-
34547657059
-
13C metabolic flux analysis of photoautotrophic microorganisms
-
DOI 10.1016/j.phytochem.2007.03.042, PII S0031942207002166
-
13C metabolic flux analysis of photoautotrophic microorganisms. Phytochemistry 2007 68 16-18 2302 2312 2-s2.0-34547657059 10.1016/j.phytochem. 2007.03.042 (Pubitemid 47211185)
-
(2007)
Phytochemistry
, vol.68
, Issue.16-18
, pp. 2302-2312
-
-
Shastri, A.A.1
Morgan, J.A.2
-
23
-
-
84899511589
-
INCA: A computational platform for isotopically non-stationary metabolic flux analysis
-
10.1093/bioinformatics/btu015
-
Young J. D., INCA: a computational platform for isotopically non-stationary metabolic flux analysis. Bioinformatics 2014 30 9 1333 1335 10.1093/bioinformatics/btu015
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1333-1335
-
-
Young, J.D.1
-
24
-
-
84887626505
-
Isotopically non-stationary metabolic flux analysis: Complex yet highly informative
-
2-s2.0-84876368023 10.1016/j.copbio.2013.03.024
-
Wiechert W., Nöh K., Isotopically non-stationary metabolic flux analysis: complex yet highly informative. Current Opinion in Biotechnology 2013 24 6 319 3332 2-s2.0-84876368023 10.1016/j.copbio.2013.03.024
-
(2013)
Current Opinion in Biotechnology
, vol.24
, Issue.6
, pp. 319-3332
-
-
Wiechert, W.1
Nöh, K.2
-
25
-
-
0033586461
-
Mass spectrometry for metabolic flux analysis
-
DOI 10.1002/(SICI)1097-0290(19990320)62:6<739::AID-BIT13>3.0.CO;2-E
-
Wittmann C., Heinzle E., Mass spectrometry for metabolic flux analysis. Biotechnology and Bioengineering 1999 62 739 750 (Pubitemid 29075553)
-
(1999)
Biotechnology and Bioengineering
, vol.62
, Issue.6
, pp. 739-750
-
-
Wittmann, C.1
Heinzle, E.2
-
26
-
-
0037145633
-
Correcting mass isotopomer distributions for naturally occurring isotopes
-
DOI 10.1002/bit.10393
-
Van Winden W. A., Wittmann C., Heinzle E., Heijnen J. J., Correcting mass isotopomer distributions for naturally occurring isotopes. Biotechnology and Bioengineering 2002 80 4 477 479 2-s2.0-0037145633 10.1002/bit.10393 (Pubitemid 35230942)
-
(2002)
Biotechnology and Bioengineering
, vol.80
, Issue.4
, pp. 477-479
-
-
Van Winden, W.A.1
Wittmann, C.2
Heinzle, E.3
Heijnen, J.J.4
-
27
-
-
33845679072
-
Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
-
DOI 10.1016/j.ymben.2006.09.001, PII S109671760600084X
-
Antoniewicz M. R., Kelleher J. K., Stephanopoulos G., Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metabolic Engineering 2007 9 1 68 86 2-s2.0-33845679072 10.1016/j.ymben.2006.09. 001 (Pubitemid 44960874)
-
(2007)
Metabolic Engineering
, vol.9
, Issue.1
, pp. 68-86
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
28
-
-
0003474751
-
-
Cambridge, Mass, USA Cambridge University Press
-
Press W. H., Flannery B. P., Teukolsky S. A., Vetterling W. T., Numerical Recipes in C: the Art of Scientific Computing 2007 Cambridge, Mass, USA Cambridge University Press
-
(2007)
Numerical Recipes in C: The Art of Scientific Computing
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
29
-
-
33745155105
-
Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
-
DOI 10.1016/j.ymben.2006.01.004, PII S1096717606000061
-
Antoniewicz M. R., Kelleher J. K., Stephanopoulos G., Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements. Metabolic Engineering 2006 8 4 324 337 2-s2.0-33745155105 10.1016/j.ymben.2006.01.004 (Pubitemid 43903302)
-
(2006)
Metabolic Engineering
, vol.8
, Issue.4
, pp. 324-337
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
30
-
-
34249007773
-
13C-Labeled metabolic flux analysis of a fed-batch culture of elutriated Saccharomyces cerevisiae
-
DOI 10.1111/j.1567-1364.2006.00199.x
-
13C-Labeled metabolic flux analysis of a fed-batch culture of elutriated Saccharomyces cerevisiae. FEMS Yeast Research 2007 7 4 511 526 2-s2.0-34249007773 10.1111/j.1567-1364.2006.00199.x (Pubitemid 46788672)
-
(2007)
FEMS Yeast Research
, vol.7
, Issue.4
, pp. 511-526
-
-
Costenoble, R.1
Muller, D.2
Barl, T.3
Van Gulik, W.M.4
Van Winden, W.A.5
Reuss, M.6
Heijnen, J.J.7
-
31
-
-
84865735753
-
Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data
-
2-s2.0-84865735753 10.1039/c2mb25069a
-
Toya Y., Nakahigashi K., Tomita M., Shimizu K., Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data. Molecular BioSystems 2012 8 10 2593 2604 2-s2.0-84865735753 10.1039/c2mb25069a
-
(2012)
Molecular BioSystems
, vol.8
, Issue.10
, pp. 2593-2604
-
-
Toya, Y.1
Nakahigashi, K.2
Tomita, M.3
Shimizu, K.4
|