메뉴 건너뛰기




Volumn 2014, Issue , 2014, Pages

OpenMebius: An open source software for isotopically nonstationary 13C-based metabolic flux analysis

Author keywords

[No Author keywords available]

Indexed keywords

CARBON 13; ISOTOPE; TRACER; CARBON;

EID: 84903650019     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/627014     Document Type: Article
Times cited : (91)

References (31)
  • 1
    • 20644467467 scopus 로고    scopus 로고
    • Systems biotechnology for strain improvement
    • DOI 10.1016/j.tibtech.2005.05.003, PII S0167779905001150
    • Sang Y. L., Lee D.-Y., Tae Y. K., Systems biotechnology for strain improvement. Trends in Biotechnology 2005 23 7 349 358 2-s2.0-20644467467 10.1016/j.tibtech.2005.05.003 (Pubitemid 40835765)
    • (2005) Trends in Biotechnology , vol.23 , Issue.7 , pp. 349-358
    • Sang, Y.L.1    Lee, D.-Y.2    Tae, Y.K.3
  • 4
    • 27744491124 scopus 로고    scopus 로고
    • 13C flux analysis
    • DOI 10.1186/1475-2859-4-30
    • 13C flux analysis. Microbial Cell Factories 2005 4, article 30 2-s2.0-27744491124 10.1186/1475-2859-4-30 (Pubitemid 41614835)
    • (2005) Microbial Cell Factories , vol.4 , pp. 30
    • Frick, O.1    Wittmann, C.2
  • 5
    • 77956969126 scopus 로고    scopus 로고
    • 13C-Metabolic flux analysis for batch culture of Escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites
    • 2-s2.0-77956969126 10.1002/btpr.420
    • 13C-Metabolic flux analysis for batch culture of Escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites. Biotechnology Progress 2010 26 4 975 992 2-s2.0-77956969126 10.1002/btpr.420
    • (2010) Biotechnology Progress , vol.26 , Issue.4 , pp. 975-992
    • Toya, Y.1    Ishii, N.2    Nakahigashi, K.3    Hirasawa, T.4    Soga, T.5    Tomita, M.6    Shimizu, K.7
  • 6
    • 80855123905 scopus 로고    scopus 로고
    • 13C enrichment data of free amino acids for precise metabolic flux analysis
    • 2-s2.0-80855123905 10.1002/biot.201000446
    • 13C enrichment data of free amino acids for precise metabolic flux analysis. Biotechnology Journal 2011 6 11 1377 1387 2-s2.0-80855123905 10.1002/biot.201000446
    • (2011) Biotechnology Journal , vol.6 , Issue.11 , pp. 1377-1387
    • Mori, E.1    Furusawa, C.2    Kajihata, S.3    Shirai, T.4    Shimizu, H.5
  • 7
    • 34447620670 scopus 로고    scopus 로고
    • Study on roles of anaplerotic pathways in glutamate overproduction of Corynebacterium glutamicum by metabolic flux analysis
    • DOI 10.1186/1475-2859-6-19
    • Shirai T., Fujimura K., Furusawa C., Nagahisa K., Shioya S., Shimizu H., Study on roles of anaplerotic pathways in glutamate overproduction of Corynebacterium glutamicum by metabolic flux analysis. Microbial Cell Factories 2007 6, article 19 2-s2.0-34447620670 10.1186/1475-2859-6-19 (Pubitemid 47086714)
    • (2007) Microbial Cell Factories , vol.6 , pp. 19
    • Shirai, T.1    Fujimura, K.2    Furusawa, C.3    Nagahisa, K.4    Shioya, S.5    Shimizu, H.6
  • 11
    • 51049091904 scopus 로고    scopus 로고
    • Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line
    • 2-s2.0-51049091904 10.1074/jbc.M706494200
    • Yoo H., Antoniewicz M. R., Stephanopoulos G., Kelleher J. K., Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line. Journal of Biological Chemistry 2008 283 30 20621 20627 2-s2.0-51049091904 10.1074/jbc.M706494200
    • (2008) Journal of Biological Chemistry , vol.283 , Issue.30 , pp. 20621-20627
    • Yoo, H.1    Antoniewicz, M.R.2    Stephanopoulos, G.3    Kelleher, J.K.4
  • 12
    • 80053105319 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • 2-s2.0-80053105319 10.1186/1752-0509-5-129
    • 13C metabolic flux analysis. BMC Systems Biology 2011 5, article 129 2-s2.0-80053105319 10.1186/1752-0509-5-129
    • (2011) BMC Systems Biology , vol.5129
    • Srour, O.1    Young, J.D.2    Eldar, Y.C.3
  • 13
    • 84857845281 scopus 로고    scopus 로고
    • Influx-s: Increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments
    • 2-s2.0-84857845281 10.1093/bioinformatics/btr716 btr716
    • Sokol S., Millard P., Portais J.-C., Influx-s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments. Bioinformatics 2012 28 5 687 693 2-s2.0-84857845281 10.1093/bioinformatics/btr716 btr716
    • (2012) Bioinformatics , vol.28 , Issue.5 , pp. 687-693
    • Sokol, S.1    Millard, P.2    Portais, J.-C.3
  • 17
    • 84872376676 scopus 로고    scopus 로고
    • 13C flux analysis of Myc-induced metabolic reprogramming in B-cells
    • 2-s2.0-84872376676 10.1016/j.ymben.2012.07.008
    • 13C flux analysis of Myc-induced metabolic reprogramming in B-cells. Metabolic Engineering 2013 15 1 206 217 2-s2.0-84872376676 10.1016/j.ymben.2012. 07.008
    • (2013) Metabolic Engineering , vol.15 , Issue.1 , pp. 206-217
    • Murphy, T.A.1    Dang, C.V.2    Young, J.D.3
  • 18
    • 84855674607 scopus 로고    scopus 로고
    • LC-MS-based metabolomics
    • 2-s2.0-84855674607 10.1039/c1mb05350g
    • Zhou B., Xiao J. F., Tuli L., Ressom H. W., LC-MS-based metabolomics. Molecular BioSystems 2012 8 2 470 481 2-s2.0-84855674607 10.1039/c1mb05350g
    • (2012) Molecular BioSystems , vol.8 , Issue.2 , pp. 470-481
    • Zhou, B.1    Xiao, J.F.2    Tuli, L.3    Ressom, H.W.4
  • 19
    • 84861230997 scopus 로고    scopus 로고
    • Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry
    • 2-s2.0-84861230997 10.1007/s00216-012-6039-y
    • Vuckovic D., Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry. Analytical and Bioanalytical Chemistry 2012 403 6 1523 1548 2-s2.0-84861230997 10.1007/s00216-012-6039-y
    • (2012) Analytical and Bioanalytical Chemistry , vol.403 , Issue.6 , pp. 1523-1548
    • Vuckovic, D.1
  • 20
    • 67349204820 scopus 로고    scopus 로고
    • Rapid sampling devices for metabolic engineering applications
    • 2-s2.0-67349204820 10.1007/s00253-009-1976-x
    • Schädel F., Franco-Lara E., Rapid sampling devices for metabolic engineering applications. Applied Microbiology and Biotechnology 2009 83 2 199 208 2-s2.0-67349204820 10.1007/s00253-009-1976-x
    • (2009) Applied Microbiology and Biotechnology , vol.83 , Issue.2 , pp. 199-208
    • Schädel, F.1    Franco-Lara, E.2
  • 21
    • 77950629593 scopus 로고    scopus 로고
    • Fast sampling for quantitative microbial metabolomics
    • 2-s2.0-77950629593 10.1016/j.copbio.2010.01.008
    • van Gulik W. M., Fast sampling for quantitative microbial metabolomics. Current Opinion in Biotechnology 2010 21 1 27 34 2-s2.0-77950629593 10.1016/j.copbio.2010.01.008
    • (2010) Current Opinion in Biotechnology , vol.21 , Issue.1 , pp. 27-34
    • Van Gulik, W.M.1
  • 22
    • 34547657059 scopus 로고    scopus 로고
    • 13C metabolic flux analysis of photoautotrophic microorganisms
    • DOI 10.1016/j.phytochem.2007.03.042, PII S0031942207002166
    • 13C metabolic flux analysis of photoautotrophic microorganisms. Phytochemistry 2007 68 16-18 2302 2312 2-s2.0-34547657059 10.1016/j.phytochem. 2007.03.042 (Pubitemid 47211185)
    • (2007) Phytochemistry , vol.68 , Issue.16-18 , pp. 2302-2312
    • Shastri, A.A.1    Morgan, J.A.2
  • 23
    • 84899511589 scopus 로고    scopus 로고
    • INCA: A computational platform for isotopically non-stationary metabolic flux analysis
    • 10.1093/bioinformatics/btu015
    • Young J. D., INCA: a computational platform for isotopically non-stationary metabolic flux analysis. Bioinformatics 2014 30 9 1333 1335 10.1093/bioinformatics/btu015
    • (2014) Bioinformatics , vol.30 , Issue.9 , pp. 1333-1335
    • Young, J.D.1
  • 24
    • 84887626505 scopus 로고    scopus 로고
    • Isotopically non-stationary metabolic flux analysis: Complex yet highly informative
    • 2-s2.0-84876368023 10.1016/j.copbio.2013.03.024
    • Wiechert W., Nöh K., Isotopically non-stationary metabolic flux analysis: complex yet highly informative. Current Opinion in Biotechnology 2013 24 6 319 3332 2-s2.0-84876368023 10.1016/j.copbio.2013.03.024
    • (2013) Current Opinion in Biotechnology , vol.24 , Issue.6 , pp. 319-3332
    • Wiechert, W.1    Nöh, K.2
  • 25
    • 0033586461 scopus 로고    scopus 로고
    • Mass spectrometry for metabolic flux analysis
    • DOI 10.1002/(SICI)1097-0290(19990320)62:6<739::AID-BIT13>3.0.CO;2-E
    • Wittmann C., Heinzle E., Mass spectrometry for metabolic flux analysis. Biotechnology and Bioengineering 1999 62 739 750 (Pubitemid 29075553)
    • (1999) Biotechnology and Bioengineering , vol.62 , Issue.6 , pp. 739-750
    • Wittmann, C.1    Heinzle, E.2
  • 26
    • 0037145633 scopus 로고    scopus 로고
    • Correcting mass isotopomer distributions for naturally occurring isotopes
    • DOI 10.1002/bit.10393
    • Van Winden W. A., Wittmann C., Heinzle E., Heijnen J. J., Correcting mass isotopomer distributions for naturally occurring isotopes. Biotechnology and Bioengineering 2002 80 4 477 479 2-s2.0-0037145633 10.1002/bit.10393 (Pubitemid 35230942)
    • (2002) Biotechnology and Bioengineering , vol.80 , Issue.4 , pp. 477-479
    • Van Winden, W.A.1    Wittmann, C.2    Heinzle, E.3    Heijnen, J.J.4
  • 27
    • 33845679072 scopus 로고    scopus 로고
    • Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
    • DOI 10.1016/j.ymben.2006.09.001, PII S109671760600084X
    • Antoniewicz M. R., Kelleher J. K., Stephanopoulos G., Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metabolic Engineering 2007 9 1 68 86 2-s2.0-33845679072 10.1016/j.ymben.2006.09. 001 (Pubitemid 44960874)
    • (2007) Metabolic Engineering , vol.9 , Issue.1 , pp. 68-86
    • Antoniewicz, M.R.1    Kelleher, J.K.2    Stephanopoulos, G.3
  • 29
    • 33745155105 scopus 로고    scopus 로고
    • Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
    • DOI 10.1016/j.ymben.2006.01.004, PII S1096717606000061
    • Antoniewicz M. R., Kelleher J. K., Stephanopoulos G., Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements. Metabolic Engineering 2006 8 4 324 337 2-s2.0-33745155105 10.1016/j.ymben.2006.01.004 (Pubitemid 43903302)
    • (2006) Metabolic Engineering , vol.8 , Issue.4 , pp. 324-337
    • Antoniewicz, M.R.1    Kelleher, J.K.2    Stephanopoulos, G.3
  • 31
    • 84865735753 scopus 로고    scopus 로고
    • Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data
    • 2-s2.0-84865735753 10.1039/c2mb25069a
    • Toya Y., Nakahigashi K., Tomita M., Shimizu K., Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data. Molecular BioSystems 2012 8 10 2593 2604 2-s2.0-84865735753 10.1039/c2mb25069a
    • (2012) Molecular BioSystems , vol.8 , Issue.10 , pp. 2593-2604
    • Toya, Y.1    Nakahigashi, K.2    Tomita, M.3    Shimizu, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.