Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons

Plant, Cell and Environment

Volumn 31, Issue 4, 2008, Pages 506-517

  Iyer, Vidya V ^a,c   Sriram, Ganesh ^a,d   Fulton, D Bruce ^b   Zhou, Ruilian ^b   Westgate, Mark E ^b   Shanks, Jacqueline V ^a  

^a Iowa State University of Science and Technology   (United States)

^b IOWA STATE UNIVERSITY   (United States)

^c RUTGERS UNIVERSITY   (United States)

^d UNIVERSITY OF MARYLAND   (United States)

Author keywords

Carbon partitioning; Central carbon metabolism; Developing soybean cotyledon; Malic enzyme; Metabolic flux analysis; Nuclear magnetic resonance; Oxidative pentose phosphate pathway

Indexed keywords

VEGETABLE OIL; VEGETABLE PROTEIN;

BIOLOGICAL DEVELOPMENT; CARBON FLUX; COMPARATIVE STUDY; ENVIRONMENTAL EFFECT; GROWTH RESPONSE; METABOLISM; MITOCHONDRION; PROTEIN; SOYBEAN; TEMPERATURE EFFECT;

ARTICLE; BIOMASS; BIOSYNTHESIS; COTYLEDON; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; SOYBEAN; TEMPERATURE;

BIOMASS; COTYLEDON; GENE EXPRESSION REGULATION, PLANT; PLANT OILS; PLANT PROTEINS; SOYBEANS; TEMPERATURE;

GLYCINE MAX;

EID: 40749095603     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2008.01781.x     Document Type: Article

References (51)

1. Bils R.F. Howell R.W. (1963) Biochemical and cytosolic changes in developing soybean cotyledons. Crop Science 3, 304 308.
2. Casati P., Drincovich M.F., Edwards G.E. Andreo C.S. (1999) Malate metabolism by NADP-malic enzyme in plant defense. Photosynthesis Research 61, 99 105.
3. Chollet R., Vidal J. O'Leary M.H. (1996) Phosphoenolpyruvate carboxylase: A ubiquitous, highly regulated enzyme in plants. Annual Review of Plant Physiology and Plant Molecular Biology 47, 273 298.
4. Cober E.R. Voldeng H.D. (2000) Developing high-protein, high-yield soybean population and lines. Crop Science 40, 39 42.
5. Dey P.M. Harborne J.B. (1997) Plant Biochemistry. Academic Press, San Diego, CA, USA.
6. 14C-labeled glucose. Journal of Biological Chemistry 270, 13147 13159.
7. Dornbos D.L.J. Mullen R.E. (1992) Soybean seed protein and oil contents and fatty acid composition adjustments by drought and temperature. Journal of American Oil Chemists' Society 69, 228 231.
8. Gibson L.R. Mullen R.E. (1996) Soybean seed composition under high day and night growth temperatures. Journal of American Oil Chemists' Society 76, 733 737.
9. Girke T., Ozkan M., Carter D. Raikhel N.V. (2003) Towards a modeling infrastructure for studying plant cells. Plant Physiology 132, 410 414.
10. Glawischnig E., Gierl A., Tomas A., Bacher A. Eisenreich W. (2001) Retrobiosynthetic nuclear magnetic resonance analysis of amino acid biosynthesis and intermediary metabolism. Metabolic flux in developing maize kernels. Plant Physiology 125, 1178 1186.
11. Glawischnig E., Gierl A., Tomas A., Bacher A. Eisenreich W. (2002) Starch biosynthesis and intermediary metabolism in maize kernels. Quantitative analysis of metabolite flux by nuclear magnetic resonance. Plant Physiology 130, 1717 1727.
12. Harris R.K. (1983) Nuclear Magentic Resonance Spectroscopy: A Physiochemical View. Pitman Books, London.
13. Hauschild R. von Schaewen A. (2003) Differential regulation of glucose-6-phosphate dehydrogenase isoenzyme activities in potato. Plant Physiology 133, 47 62.
14. Howell R.W. Cartter J.L. (1953) Physiological factors affecting composition of soybeans. I. Correlation and temperature during certain portions of the pod filling stage with oil percentage in mature bean. Agronomy Journal 45, 526 528.
15. Johnson B.A. Blevins R.A. (1994) NMRView: a computer program for the visualization and analysis of NMR data. Journal of Biomolecular NMR 4, 603 614.
16. Kane M., Steele C., Grabau L., Mackown C. Hildebrand D. (1997) Early-maturing soybean cropping system: III. Protein and oil contents and oil composition. Agronomy Journal 89, 464 469.
17. Kauffman K.J., Ogunnaike B.A. Edwards J.S. (2006) Designing experiments that aid in the identification of regulatory networks. Briefings in Functional Genomics and Proteomics 4, 331 342.
18. Kinney A.J. (1998) Plants as industrial chemical factories - new oils from genetically engineered soybeans. Fett/Lipid 100, 173 176.
19. Lichtner F.T. Spanswick R.M. (1981) Sucrose uptake by developing soybean cotyledons. Plant Physiology 68, 693 698.
20. Maciejewska U. Bogatek R. (2002) Glucose catabolism in leaves of cold-treated winter rape plants. Journal of Plant Physiology 159, 397 402.
21. Minorsky P.V. (2003) Achieving the in silico plant. Systems biology and the future of plant biological research. Plant Physiology 132, 404 409.
22. Moing A., Maucourt M., Renaud C., et al 2004) Quantitative metabolic profiling by 1-dimensional 1H-NMR analyses: application to plant genetics and functional genomics. Functional Plant Biology 31, 889 902.
23. Myers D.J. (1993) Industrial applications for soy protein and potential for increased utilization. Cereal Foods World 38, 355 360.
24. Nakasathien S., Israel D.W., Wilson R.F. Kwanyuen P. (2000) Regulation of seed protein concentration in soybean by supra-optimal nitrogen supply. Crop Science 40, 1277 1284.
25. Nielsen J. (1998) Metabolic engineering: techniques for analysis of targets for genetic manipulations. Biotechnology and Bioengineering 58, 125 132.
26. Piper E.L. Boote K.J. (1999) Temperature and cultivar effects on soybean seed oil and protein concentrations. Journal of American Oil Chemists' Society 76, 1233 1241.
27. Pipolo A.E., Siclair T.R. Camara G. (2004) Effects of temperature on oil and protein concentration in soybean seeds cultured in vitro. Annals of Applied Biology 144, 71 76.
28. Press W.H., Teukolsky S.A., Vellerling W.T. Flannery B.P. (1992) Numerical recipes in C, 2nd edn. Cambridge University Press, Cambridge, UK.
29. Ratcliffe R.G. Shachar-Hill Y. (2006) Measuring multiple fluxes through plant metabolic networks. The Plant Journal 45, 490 511.
30. Rontein D., Dieuaide-Noubhani M., Dufourc E.J., Raymond P. Rolin D. (2002) The metabolic architecture of plant cells. Journal of Biological Chemistry 277, 43948 43960.
31. Schwender J., Ohlrogge J. Shachar-Hill Y. (2003) A flux model of glycolysis and oxidative pentose phosphate pathway in developing Brassica napus embryos. Journal of Biological Chemistry 278, 29442 29453.
32. Schwender J., Goffman F., Ohlrogge J. Shachar-Hill Y. (2004) Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 432, 779 782.
33. Schwender J., Shachar-Hill Y. Ohlrogge J. (2006) Mitochondriol metabolism in developing embryos of Brassica napus. Journal of Biological Chemistry 281, 34040 34047.
34. 13C metabolic flux analysis of photoautotrophic microorganisms. Phytochemistry 68, 2302 2312.
35. Singh B. (1998) Plant Amino Acids (Books in Soils, Plants, & the Environment). Marcel-Dekker, New York, NY, USA.
36. Smith A.J., Rinne R.W. Seif R.D. (1989) Phosphoenolpyruvate carboxylase and pyruvate kinase involvement in protein and oil biosynthesis during soybean seed development. Crop Science 29, 349 353.
37. Sriram G. Shanks J.V. (2004) Improvements in metabolic flux analysis using carbon labeling experiments: bondomer balancing and boolean function mapping. Metabolic Engineering 6, 116 132.
38. 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiology 136, 3043 3057.
39. 13C labeling and comprehensive bondomer balancing. Phytochemistry 68, 2243 2257.
40. Sriram G., Iyer V.V., Fulton D.B. Shanks J.V. (2007b) Identification of hexose hydrolysis products in metabolic flux analytes: a case study of levulinic acid in plant protein hydrolysate. Metabolic Engineering 9, 442 451.
41. Stephanopoulos G. (1999) Metabolic fluxes and metabolic engineering. Metabolic Engineering 1, 1 11.
42. Stephanopoulos G. Vallino J.J. (1991) Network rigidity and metabolic engineering in metabolite overproduction. Science 252, 1675 1681.
43. Sweetlove L.J. Fernie A.R. (2005) Regulation of metabolic networks: understanding metabolic complexity in the systems biology era. New Phytologist 168, 9 24.
44. Sweetlove L.J., Last R.L. Fernie A.R. (2003) Predictive metabolic engineering: a goal for systems biology. Plant Physiology 132, 420 425.
45. 13C-NMR, MS and metabolic flux balancing in biotechnology research. Quarterly Reviews of Biophysics 31, 41 106.
46. Westgate M.E., Orf J.H., Schussler J.R. Shumway C. (eds 1995) Temperature Regulation of Uptake and Metabolism of Protein and Oil Precursors by Developing Soybean Embryos. American Society of Agronomy, Madison, WI, USA.
47. Westgate M.E., Piper E.L., Batchelor W.D. Hurburgh C. (2000) Effects of cultural and environmental conditions during soybean growth on nutritive value of soy products. In Soy in Animal Nutrition (ed. J.K. Drackley pp. 75 89. Federation of Animal Science Societies, Savoy, IL, USA.
48. Wiechert W. Wurzel M. (2001) Metabolic isotopomer labeling systems. Part I: global dynamic behavior. Mathematical Biosciences 169, 173 205.
49. 13C metabolic flux analysis. Metabolic Engineering 3, 265 283.
50. 13C-labeled biofluids. Journal of Magnetic Resonance 125, 216 219.
51. 1H] COSY NMR spectra for metabolic flux analysis purposes. Metabolic Engineering 3, 322 343.