-
1
-
-
14744267531
-
Flux an important, but neglected, component of functional genomics
-
Fernie A.R., Geigenberger P., Stitt M. Flux an important, but neglected, component of functional genomics. Curr Opin Plant Biol 2005, 8:174-182.
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 174-182
-
-
Fernie, A.R.1
Geigenberger, P.2
Stitt, M.3
-
3
-
-
84878983702
-
Systems-integration of plant metabolism: means, motive and opportunity
-
Stitt M. Systems-integration of plant metabolism: means, motive and opportunity. Curr Opin Plant Biol 2013, 16:381-388.
-
(2013)
Curr Opin Plant Biol
, vol.16
, pp. 381-388
-
-
Stitt, M.1
-
4
-
-
33644853940
-
Measuring multiple fluxes through plant metabolic networks
-
Ratcliffe R.G., Shachar-Hill Y. Measuring multiple fluxes through plant metabolic networks. Plant J 2006, 45:490-511.
-
(2006)
Plant J
, vol.45
, pp. 490-511
-
-
Ratcliffe, R.G.1
Shachar-Hill, Y.2
-
6
-
-
84859369500
-
Pathways and fluxes: exploring the plant metabolic network
-
Kruger N.J., Ratcliffe R.G. Pathways and fluxes: exploring the plant metabolic network. J Exp Bot 2012, 63:2243-2246.
-
(2012)
J Exp Bot
, vol.63
, pp. 2243-2246
-
-
Kruger, N.J.1
Ratcliffe, R.G.2
-
7
-
-
84874976408
-
Metabolic network flux analysis for engineering plant systems
-
Shachar-Hill Y. Metabolic network flux analysis for engineering plant systems. Curr Opin Biotechnol 2013, 24:247-255.
-
(2013)
Curr Opin Biotechnol
, vol.24
, pp. 247-255
-
-
Shachar-Hill, Y.1
-
8
-
-
84859364209
-
Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies
-
O'Grady J., Schwender J., Shachar-Hill Y., Morgan J.A. Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies. J Exp Bot 2012, 63:2293-2308.
-
(2012)
J Exp Bot
, vol.63
, pp. 2293-2308
-
-
O'Grady, J.1
Schwender, J.2
Shachar-Hill, Y.3
Morgan, J.A.4
-
9
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities
-
Edwards J.S., Palsson B.O. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc Natl Acad Sci U S A 2000, 97:5528-5533.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
10
-
-
58449106341
-
Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism
-
Grafahrend-Belau E., Schreiber F., Koschützki D., Junker B.H. Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol 2009, 149:585-598.
-
(2009)
Plant Physiol
, vol.149
, pp. 585-598
-
-
Grafahrend-Belau, E.1
Schreiber, F.2
Koschützki, D.3
Junker, B.H.4
-
11
-
-
70350676551
-
A genome-scale metabolic model of Arabidopsis and some of its properties
-
Poolman M.G., Miguet L., Sweetlove L.J., Fell D.A. A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol 2009, 151:1570-1581.
-
(2009)
Plant Physiol
, vol.151
, pp. 1570-1581
-
-
Poolman, M.G.1
Miguet, L.2
Sweetlove, L.J.3
Fell, D.A.4
-
12
-
-
78649796264
-
C4GEM, a genome-scale metabolic model to study C4 plant metabolism
-
Dal'Molin C.G., Quek L.E., Palfreyman R.W., Brumbley S.M., Nielsen L.K. C4GEM, a genome-scale metabolic model to study C4 plant metabolism. Plant Physiol 2010, 154:1871-1885.
-
(2010)
Plant Physiol
, vol.154
, pp. 1871-1885
-
-
Dal'Molin, C.G.1
Quek, L.E.2
Palfreyman, R.W.3
Brumbley, S.M.4
Nielsen, L.K.5
-
13
-
-
84856015478
-
Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity
-
Mintz-Oron S., Meir S., Malitsky S., Ruppin E., Aharoni A., Shlomi T. Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity. Proc Natl Acad Sci U S A 2012, 109:339-344.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 339-344
-
-
Mintz-Oron, S.1
Meir, S.2
Malitsky, S.3
Ruppin, E.4
Aharoni, A.5
Shlomi, T.6
-
14
-
-
84885218166
-
Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale
-
Grafahrend-Belau E., Junker A., Eschenröder A., Müller J., Schreiber F., Junker B.H. Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale. Plant Physiol 2013, 163:637-647.
-
(2013)
Plant Physiol
, vol.163
, pp. 637-647
-
-
Grafahrend-Belau, E.1
Junker, A.2
Eschenröder, A.3
Müller, J.4
Schreiber, F.5
Junker, B.H.6
-
15
-
-
84859346785
-
Strategies for investigating the plant metabolic network with steady-state metabolic flux analysis: lessons from an Arabidopsis cell culture and other systems
-
Kruger N.J., Masakapalli S.K., Ratcliffe R.G. Strategies for investigating the plant metabolic network with steady-state metabolic flux analysis: lessons from an Arabidopsis cell culture and other systems. J Exp Bot 2012, 63:2309-2323.
-
(2012)
J Exp Bot
, vol.63
, pp. 2309-2323
-
-
Kruger, N.J.1
Masakapalli, S.K.2
Ratcliffe, R.G.3
-
16
-
-
84877703455
-
The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply
-
Masakapalli S.K., Kruger N.J., Ratcliffe R.G. The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply. Plant J 2013, 74:569-582.
-
(2013)
Plant J
, vol.74
, pp. 569-582
-
-
Masakapalli, S.K.1
Kruger, N.J.2
Ratcliffe, R.G.3
-
17
-
-
70350645014
-
Analysis of metabolic flux phenotypes for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis
-
Lonien J., Schwender J. Analysis of metabolic flux phenotypes for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis. Plant Physiol 2009, 151:1617-1634.
-
(2009)
Plant Physiol
, vol.151
, pp. 1617-1634
-
-
Lonien, J.1
Schwender, J.2
-
18
-
-
33746228190
-
Robustness of central carbohydrate metabolism in developing maize kernels
-
Spielbauer G., Margl L., Hannah L.C., Römisch W., Ettenhuber C., Bacher A., Gierl A., Eisenreich W., Genschel U. Robustness of central carbohydrate metabolism in developing maize kernels. Phytochemistry 2006, 67:1460-1475.
-
(2006)
Phytochemistry
, vol.67
, pp. 1460-1475
-
-
Spielbauer, G.1
Margl, L.2
Hannah, L.C.3
Römisch, W.4
Ettenhuber, C.5
Bacher, A.6
Gierl, A.7
Eisenreich, W.8
Genschel, U.9
-
19
-
-
20044375201
-
Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
-
Fischer E., Sauer U. Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nat Genet 2005, 37:636-640.
-
(2005)
Nat Genet
, vol.37
, pp. 636-640
-
-
Fischer, E.1
Sauer, U.2
-
21
-
-
0033979908
-
Strategies for metabolic flux analysis in plants using isotope labelling
-
Roscher A., Kruger N.J., Ratcliffe R.G. Strategies for metabolic flux analysis in plants using isotope labelling. J Biotechnol 2000, 77:81-102.
-
(2000)
J Biotechnol
, vol.77
, pp. 81-102
-
-
Roscher, A.1
Kruger, N.J.2
Ratcliffe, R.G.3
-
23
-
-
84875527498
-
Metabolic fluxes in an illuminated Arabidopsis rosette
-
Szecowka M., Heise R., Tohge T., Nunes-Nesi A., Vosloh D., Huege J., Feil R., Lunn J., Nikoloski Z., Stitt M., Fernie A.R., Arrivault S. Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell 2013, 25:694-714.
-
(2013)
Plant Cell
, vol.25
, pp. 694-714
-
-
Szecowka, M.1
Heise, R.2
Tohge, T.3
Nunes-Nesi, A.4
Vosloh, D.5
Huege, J.6
Feil, R.7
Lunn, J.8
Nikoloski, Z.9
Stitt, M.10
Fernie, A.R.11
Arrivault, S.12
-
24
-
-
84885592234
-
Measurement of intracellular metabolic fluxes in plants
-
(in German, with English abstract)
-
Franke M., Huege J., Tablack P., Junker B.H. Measurement of intracellular metabolic fluxes in plants. BIOspektrum 2013, 19:690-693. (in German, with English abstract).
-
(2013)
BIOspektrum
, vol.19
, pp. 690-693
-
-
Franke, M.1
Huege, J.2
Tablack, P.3
Junker, B.H.4
-
25
-
-
84868648741
-
IMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis
-
Poskar C.H., Huege J., Krach C., Franke M., Shachar-Hill Y., Junker B.H. iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis. BMC Bioinform 2012, 13:295.
-
(2012)
BMC Bioinform
, vol.13
, pp. 295
-
-
Poskar, C.H.1
Huege, J.2
Krach, C.3
Franke, M.4
Shachar-Hill, Y.5
Junker, B.H.6
-
26
-
-
85015538128
-
Flux-P: automating metabolic flux analysis
-
Ebert B.E., Lamprecht A.L., Steffen B., Blank L.M. Flux-P: automating metabolic flux analysis. Metabolites 2012, 2:872-890.
-
(2012)
Metabolites
, vol.2
, pp. 872-890
-
-
Ebert, B.E.1
Lamprecht, A.L.2
Steffen, B.3
Blank, L.M.4
-
28
-
-
84934442089
-
High-throughput data pipelines for metabolic flux analysis in plants
-
Poskar C.H., Huege J., Krach C., Shachar-Hill Y., Junker B.H. High-throughput data pipelines for metabolic flux analysis in plants. Methods Mol Biol 2014, 1090:223-246.
-
(2014)
Methods Mol Biol
, vol.1090
, pp. 223-246
-
-
Poskar, C.H.1
Huege, J.2
Krach, C.3
Shachar-Hill, Y.4
Junker, B.H.5
-
29
-
-
84862157783
-
FluxMap: a VANTED add-on for the visual exploration of flux distributions in biological networks
-
Rohn H., Hartmann A., Junker A., Junker B.H., Schreiber F. FluxMap: a VANTED add-on for the visual exploration of flux distributions in biological networks. BMC Syst Biol 2012, 6:33.
-
(2012)
BMC Syst Biol
, vol.6
, pp. 33
-
-
Rohn, H.1
Hartmann, A.2
Junker, A.3
Junker, B.H.4
Schreiber, F.5
-
30
-
-
33645241830
-
VANTED: a system for advanced data analysis and visualization in the context of biological networks
-
Junker B.H., Klukas C., Schreiber F. VANTED: a system for advanced data analysis and visualization in the context of biological networks. BMC Bioinform 2006, 7:109.
-
(2006)
BMC Bioinform
, vol.7
, pp. 109
-
-
Junker, B.H.1
Klukas, C.2
Schreiber, F.3
-
31
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
-
Becker S.A., Feist A.M., Mo M.L., Hannum G., Palsson BØ, Herrgard M.J. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protoc 2007, 2:727-738.
-
(2007)
Nat Protoc
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson BØ5
Herrgard, M.J.6
-
32
-
-
70350029519
-
FBA-SimVis: interactive visualization of constraint-based metabolic models
-
Grafahrend-Belau E., Klukas C., Junker B.H., Schreiber F. FBA-SimVis: interactive visualization of constraint-based metabolic models. Bioinformatics 2009, 25:2755-2757.
-
(2009)
Bioinformatics
, vol.25
, pp. 2755-2757
-
-
Grafahrend-Belau, E.1
Klukas, C.2
Junker, B.H.3
Schreiber, F.4
-
33
-
-
0032753923
-
Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
-
Sauer U., Lasko D.R., Fiaux J., Hochuli M., Glaser R., Szyperski T., Wüthrich K., Bailey J.E. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J Bacteriol 1999, 181:6679-6688.
-
(1999)
J Bacteriol
, vol.181
, pp. 6679-6688
-
-
Sauer, U.1
Lasko, D.R.2
Fiaux, J.3
Hochuli, M.4
Glaser, R.5
Szyperski, T.6
Wüthrich, K.7
Bailey, J.E.8
-
34
-
-
0034731616
-
The commercial production of chemicals using pathway engineering
-
Chotani G., Dodge T., Hsu A., Kumar M., LaDuca R., Trimbur D., Weyler W., Sanford K. The commercial production of chemicals using pathway engineering. Biochim Biophys Acta 2000, 1543:434-455.
-
(2000)
Biochim Biophys Acta
, vol.1543
, pp. 434-455
-
-
Chotani, G.1
Dodge, T.2
Hsu, A.3
Kumar, M.4
LaDuca, R.5
Trimbur, D.6
Weyler, W.7
Sanford, K.8
-
35
-
-
1442352575
-
Serial flux mapping of Corynebacterium glutamicum during fed-batch l-lysine production using the sensor reactor approach
-
Drysch A., El Massaoudi M., Wiechert W., de Graaf A.A., Takors R. Serial flux mapping of Corynebacterium glutamicum during fed-batch l-lysine production using the sensor reactor approach. Biotechnol Bioeng 2004, 85:497-505.
-
(2004)
Biotechnol Bioeng
, vol.85
, pp. 497-505
-
-
Drysch, A.1
El Massaoudi, M.2
Wiechert, W.3
de Graaf, A.A.4
Takors, R.5
-
36
-
-
77954701087
-
Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum
-
Gowen C.M., Fong S.S. Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum. Biotechnol J 2010, 5:759-767.
-
(2010)
Biotechnol J
, vol.5
, pp. 759-767
-
-
Gowen, C.M.1
Fong, S.S.2
-
37
-
-
84865801956
-
Towards high throughput metabolic flux analysis in plants
-
Huege J., Poskar C.H., Franke M., Junker B.H. Towards high throughput metabolic flux analysis in plants. Mol Biosyst 2012, 8:2466-2469.
-
(2012)
Mol Biosyst
, vol.8
, pp. 2466-2469
-
-
Huege, J.1
Poskar, C.H.2
Franke, M.3
Junker, B.H.4
-
38
-
-
33645746673
-
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
-
Schauer N., Semel Y., Roessner U., Gur A., Balbo I., Carrari F., Pleban T., Perez-Melis A., Bruedigam C., Kopka J., Willmitzer L., Zamir D., Fernie A.R. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol 2006, 24:447-454.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 447-454
-
-
Schauer, N.1
Semel, Y.2
Roessner, U.3
Gur, A.4
Balbo, I.5
Carrari, F.6
Pleban, T.7
Perez-Melis, A.8
Bruedigam, C.9
Kopka, J.10
Willmitzer, L.11
Zamir, D.12
Fernie, A.R.13
-
39
-
-
40549123412
-
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations
-
Lisec J., Meyer R.C., Steinfath M., Redestig H., Becher M., Witucka-Wall H., Fiehn O., Törjék O., Selbig J., Altmann T., Willmitzer L. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J 2008, 53:960-972.
-
(2008)
Plant J
, vol.53
, pp. 960-972
-
-
Lisec, J.1
Meyer, R.C.2
Steinfath, M.3
Redestig, H.4
Becher, M.5
Witucka-Wall, H.6
Fiehn, O.7
Törjék, O.8
Selbig, J.9
Altmann, T.10
Willmitzer, L.11
|