메뉴 건너뛰기




Volumn 81, Issue 1, 2015, Pages 91-99

Distribution of human-specific Bacteroidales and fecal indicator bacteria in an urban watershed impacted by sewage pollution, determined using RNA- and DNA-based quantitative PCR assays

Author keywords

[No Author keywords available]

Indexed keywords

ASSAYS; BACILLI; COLIFORM BACTERIA; DNA; RNA; SEWAGE; SIGNAL DETECTION; TRANSCRIPTION; WATER ANALYSIS; WATER POLLUTION;

EID: 84917691304     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02446-14     Document Type: Article
Times cited : (47)

References (57)
  • 1
    • 34547476651 scopus 로고    scopus 로고
    • Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution
    • Santo Domingo JW, Bambic DG, Edge TA, Wuertz S. 2007. Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution. Water Res 41:3539-3552.
    • (2007) Water Res , vol.41 , pp. 3539-3552
    • Santo Domingo, J.W.1    Bambic, D.G.2    Edge, T.A.3    Wuertz, S.4
  • 2
    • 4644286296 scopus 로고    scopus 로고
    • Urban wet-weather flows: sources of fecal contamination impacting on recreational waters and threatening drinking-water sources
    • Marsalek J, Rochfort Q. 2004. Urban wet-weather flows: sources of fecal contamination impacting on recreational waters and threatening drinking-water sources. J Toxicol Environ Health Part A 67:1765-1777. http://dx.doi.org/10.1080/15287390490492430.
    • (2004) J Toxicol Environ Health Part A , vol.67 , pp. 1765-1777
    • Marsalek, J.1    Rochfort, Q.2
  • 3
    • 0036598374 scopus 로고    scopus 로고
    • Laboratory investigation of an Escherichia coli O157: H7 outbreak associated with swimming in Battle Ground Lake, Vancouver, Washington
    • Samadpour M, Stewart J, Steingart K, Addy C, Louderback J, McGinn M, Ellington J, Newman T. 2002. Laboratory investigation of an Escherichia coli O157: H7 outbreak associated with swimming in Battle Ground Lake, Vancouver, Washington. J Environ Health 64:16-20.
    • (2002) J Environ Health , vol.64 , pp. 16-20
    • Samadpour, M.1    Stewart, J.2    Steingart, K.3    Addy, C.4    Louderback, J.5    McGinn, M.6    Ellington, J.7    Newman, T.8
  • 5
    • 0034425504 scopus 로고    scopus 로고
    • Assessment of enteric pathogen shedding by bathers during recreational activity and its impact on water quality
    • Gerba CP. 2000. Assessment of enteric pathogen shedding by bathers during recreational activity and its impact on water quality. Quant Microbiol 2:55-68. http://dx.doi.org/10.1023/A:1010000230103.
    • (2000) Quant Microbiol , vol.2 , pp. 55-68
    • Gerba, C.P.1
  • 6
    • 0029110315 scopus 로고
    • Sewage contamination in the upper Mississippi River as measured by the fecal sterol, coprostanol
    • Leenheer JA, Barber LB, Amy GL, Chapra SC. 1995. Sewage contamination in the upper Mississippi River as measured by the fecal sterol, coprostanol. Water Res 29:1427-1436. http://dx.doi.org/10.1016/0043-1354(94)00304-P.
    • (1995) Water Res , vol.29 , pp. 1427-1436
    • Leenheer, J.A.1    Barber, L.B.2    Amy, G.L.3    Chapra, S.C.4
  • 7
    • 79959798623 scopus 로고    scopus 로고
    • Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment
    • Sauer EP, VandeWalle JL, Bootsma MJ, McLellan SL. 2011. Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment. Water Res 45:4081-4091. http://dx.doi.org/10.1016/j.watres.2011.04.049.
    • (2011) Water Res , vol.45 , pp. 4081-4091
    • Sauer, E.P.1    VandeWalle, J.L.2    Bootsma, M.J.3    McLellan, S.L.4
  • 8
    • 20544469964 scopus 로고    scopus 로고
    • Enteric viruses of humans and animals in aquatic environments: health risks, detection, and potential water quality assessment tools
    • Fong T-T, Lipp EK. 2005. Enteric viruses of humans and animals in aquatic environments: health risks, detection, and potential water quality assessment tools. Microbiol Mol Biol Rev 69:357-371. http://dx.doi.org/10.1128/MMBR.69.2.357-371.2005.
    • (2005) Microbiol Mol Biol Rev , vol.69 , pp. 357-371
    • Fong, T.-T.1    Lipp, E.K.2
  • 9
    • 0034713642 scopus 로고    scopus 로고
    • Urban impacts on the ecology of receiving waters: a framework for assessment, conservation and restoration
    • Walsh CJ. 2000. Urban impacts on the ecology of receiving waters: a framework for assessment, conservation and restoration. Hydrobiologia 431:107-114. http://dx.doi.org/10.1023/A:1004029715627.
    • (2000) Hydrobiologia , vol.431 , pp. 107-114
    • Walsh, C.J.1
  • 10
    • 0036946650 scopus 로고    scopus 로고
    • Microbial source tracking: current methodology and future directions
    • Scott TM, Rose JB, Jenkins TM, Farrah SR, Lukasik J. 2002. Microbial source tracking: current methodology and future directions. Appl Environ Microbiol 68:5796-5803. http://dx.doi.org/10.1128/AEM.68.12.5796-5803.2002.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5796-5803
    • Scott, T.M.1    Rose, J.B.2    Jenkins, T.M.3    Farrah, S.R.4    Lukasik, J.5
  • 11
  • 12
    • 33745153077 scopus 로고    scopus 로고
    • Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
    • Layton A, McKay L, Williams D, Garrett V, Gentry R, Sayler G. 2006. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl Environ Microbiol 72:4214-4224. http://dx.doi.org/10.1128/AEM.01036-05.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4214-4224
    • Layton, A.1    McKay, L.2    Williams, D.3    Garrett, V.4    Gentry, R.5    Sayler, G.6
  • 14
    • 0037401010 scopus 로고    scopus 로고
    • Molecular methods for the assessment of bacterial viability
    • Keer J, Birch L. 2003. Molecular methods for the assessment of bacterial viability. J Microbiol Methods 53:175-183. http://dx.doi.org/10.1016/S0167-7012(03)00025-3.
    • (2003) J Microbiol Methods , vol.53 , pp. 175-183
    • Keer, J.1    Birch, L.2
  • 15
    • 65549146674 scopus 로고    scopus 로고
    • Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide
    • Bae S, Wuertz S. 2009. Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide. Appl Environ Microbiol 75:2940-2944. http://dx.doi.org/10.1128/AEM.01333-08.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2940-2944
    • Bae, S.1    Wuertz, S.2
  • 16
    • 38949182262 scopus 로고    scopus 로고
    • Release and persistence of extracellular DNA in the environment
    • Nielsen KM, Johnsen PJ, Bensasson D, Daffonchio D. 2007. Release and persistence of extracellular DNA in the environment. Environ Biosafety Res 6:37-53. http://dx.doi.org/10.1051/ebr:2007031.
    • (2007) Environ Biosafety Res , vol.6 , pp. 37-53
    • Nielsen, K.M.1    Johnsen, P.J.2    Bensasson, D.3    Daffonchio, D.4
  • 17
    • 0242496945 scopus 로고    scopus 로고
    • Degradation of stable RNA in bacteria
    • Deutscher MP. 2003. Degradation of stable RNA in bacteria. J Biol Chem 278:45041-45044. http://dx.doi.org/10.1074/jbc.R300031200.
    • (2003) J Biol Chem , vol.278 , pp. 45041-45044
    • Deutscher, M.P.1
  • 18
    • 0027264175 scopus 로고
    • Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
    • Poulsen LK, Ballard G, Stahl DA. 1993. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl Environ Microbiol 59:1354-1360.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1354-1360
    • Poulsen, L.K.1    Ballard, G.2    Stahl, D.A.3
  • 19
    • 5444223395 scopus 로고    scopus 로고
    • Two novel real-time reverse transcriptase PCR assays for rapid detection of bacterial contamination in platelet concentrates
    • Dreier J, Störmer M, Kleesiek K. 2004. Two novel real-time reverse transcriptase PCR assays for rapid detection of bacterial contamination in platelet concentrates. J Clin Microbiol 42:4759-4764. http://dx.doi.org/10.1128/JCM.42.10.4759-4764.2004.
    • (2004) J Clin Microbiol , vol.42 , pp. 4759-4764
    • Dreier, J.1    Störmer, M.2    Kleesiek, K.3
  • 20
    • 63849243189 scopus 로고    scopus 로고
    • Establishment of an analytical system for the human fecal microbiota, based on reverse transcription-quantitative PCR targeting of multicopy rRNA molecules
    • Matsuda K, Tsuji H, Asahara T, Matsumoto K, Takada T, Nomoto K. 2009. Establishment of an analytical system for the human fecal microbiota, based on reverse transcription-quantitative PCR targeting of multicopy rRNA molecules. Appl Environ Microbiol 75:1961-1969. http://dx.doi.org/10.1128/AEM.01843-08.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1961-1969
    • Matsuda, K.1    Tsuji, H.2    Asahara, T.3    Matsumoto, K.4    Takada, T.5    Nomoto, K.6
  • 21
    • 79953239093 scopus 로고    scopus 로고
    • Comparison of partial and full nitrification processes applied for treating high-strength nitrogen wastewaters: microbial ecology through nitrous oxide production
    • Ahn JH, Kwan T, Chandran K. 2011. Comparison of partial and full nitrification processes applied for treating high-strength nitrogen wastewaters: microbial ecology through nitrous oxide production. Environ Sci Technol 45:2734-2740. http://dx.doi.org/10.1021/es103534g.
    • (2011) Environ Sci Technol , vol.45 , pp. 2734-2740
    • Ahn, J.H.1    Kwan, T.2    Chandran, K.3
  • 22
    • 73649092431 scopus 로고    scopus 로고
    • A risk assessment model to evaluate the role of fecal contamination in recreational water on the incidence of cryptosporidiosis at the community level in Ontario
    • Pintar K, Fazil A, Pollari F, Charron D, Waltner-Toews D, McEwen S. 2010. A risk assessment model to evaluate the role of fecal contamination in recreational water on the incidence of cryptosporidiosis at the community level in Ontario. Risk Anal 30:49-64. http://dx.doi.org/10.1111/j.1539-6924.2009.01321.x.
    • (2010) Risk Anal , vol.30 , pp. 49-64
    • Pintar, K.1    Fazil, A.2    Pollari, F.3    Charron, D.4    Waltner-Toews, D.5    McEwen, S.6
  • 24
    • 66649133470 scopus 로고    scopus 로고
    • Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms
    • Walters SP, Field KG. 2009. Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms. Environ Microbiol 11:1410-1421. http://dx.doi.org/10.1111/j.1462-2920.2009.01868.x.
    • (2009) Environ Microbiol , vol.11 , pp. 1410-1421
    • Walters, S.P.1    Field, K.G.2
  • 25
    • 70350773421 scopus 로고    scopus 로고
    • Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide
    • Bae S, Wuertz S. 2009. Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide. Water Res 43:4850-4859. http://dx.doi.org/10.1016/j.watres.2009.06.053.
    • (2009) Water Res , vol.43 , pp. 4850-4859
    • Bae, S.1    Wuertz, S.2
  • 26
    • 0035321749 scopus 로고    scopus 로고
    • Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil
    • Nogales B, Moore ER, Llobet-Brossa E, Rossello-Mora R, Amann R, Timmis KN. 2001. Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Appl Environ Microbiol 67:1874-1884. http://dx.doi.org/10.1128/AEM.67.4.1874-1884.2001.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1874-1884
    • Nogales, B.1    Moore, E.R.2    Llobet-Brossa, E.3    Rossello-Mora, R.4    Amann, R.5    Timmis, K.N.6
  • 27
    • 84889784163 scopus 로고    scopus 로고
    • Detection of fecal bacteria and source tracking identifiers in environmental waters using rRNA-based RT-qPCR and rDNA-based qPCR assays
    • Pitkänen T, Ryu H, Elk M, Hokajärvi A-M, Siponen S, Vepsäläinen A, Räsänen P, Santo Domingo JW. 2013. Detection of fecal bacteria and source tracking identifiers in environmental waters using rRNA-based RT-qPCR and rDNA-based qPCR assays. Environ Sci Technol 47:13611-13620. http://dx.doi.org/10.1021/es403489b.
    • (2013) Environ Sci Technol , vol.47 , pp. 13611-13620
    • Pitkänen, T.1    Ryu, H.2    Elk, M.3    Hokajärvi, A.-M.4    Siponen, S.5    Vepsäläinen, A.6    Räsänen, P.7    Santo Domingo, J.W.8
  • 28
    • 84866180610 scopus 로고    scopus 로고
    • Sensitive quantification of Clostridium difficile cells by reverse transcription-quantitative PCR targeting rRNA molecules
    • Matsuda K, Tsuji H, Asahara T, Takahashi T, Kubota H, Nagata S, Yamashiro Y, Nomoto K. 2012. Sensitive quantification of Clostridium difficile cells by reverse transcription-quantitative PCR targeting rRNA molecules. Appl Environ Microbiol 78:5111-5118. http://dx.doi.org/10.1128/AEM.07990-11.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 5111-5118
    • Matsuda, K.1    Tsuji, H.2    Asahara, T.3    Takahashi, T.4    Kubota, H.5    Nagata, S.6    Yamashiro, Y.7    Nomoto, K.8
  • 29
    • 77953994072 scopus 로고    scopus 로고
    • Heterogeneous rpoS and rhlRmRNAlevels and 16S rRNA/rDNA (rRNA gene) ratios within Pseudomonas aeruginosa biofilms, sampled by laser capture microdissection
    • Pérez-Osorio AC, Williamson KS, Franklin MJ. 2010. Heterogeneous rpoS and rhlRmRNAlevels and 16S rRNA/rDNA (rRNA gene) ratios within Pseudomonas aeruginosa biofilms, sampled by laser capture microdissection. J Bacteriol 192:2991-3000. http://dx.doi.org/10.1128/JB.01598-09.
    • (2010) J Bacteriol , vol.192 , pp. 2991-3000
    • Pérez-Osorio, A.C.1    Williamson, K.S.2    Franklin, M.J.3
  • 30
    • 79961239913 scopus 로고    scopus 로고
    • Activity of abundant and rare bacteria in a coastal ocean
    • Campbell BJ, Yu L, Heidelberg JF, Kirchman DL. 2011. Activity of abundant and rare bacteria in a coastal ocean. Proc Natl Acad Sci U S A 108:12776-12781. http://dx.doi.org/10.1073/pnas.1101405108.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 12776-12781
    • Campbell, B.J.1    Yu, L.2    Heidelberg, J.F.3    Kirchman, D.L.4
  • 31
    • 84917686668 scopus 로고    scopus 로고
    • Metropolitan Sewer District of Greater Cincinnati, Cincinnati, OH
    • Metropolitan Sewer District of Greater Cincinnati. 2013. Integrated sustainable watershed management manual. Metropolitan Sewer District of Greater Cincinnati, Cincinnati, OH.
    • (2013) Integrated sustainable watershed management manual
  • 33
    • 84884220635 scopus 로고    scopus 로고
    • Correlative assessment of fecal indicators using human mitochondrial DNA as a direct marker
    • Kapoor V, Smith C, Santo Domingo JW, Lu T, Wendell D. 2013. Correlative assessment of fecal indicators using human mitochondrial DNA as a direct marker. Environ Sci Technol 47:10485-10493. http://dx.doi.org/10.1021/es4020458.
    • (2013) Environ Sci Technol , vol.47 , pp. 10485-10493
    • Kapoor, V.1    Smith, C.2    Santo Domingo, J.W.3    Lu, T.4    Wendell, D.5
  • 34
    • 79551651305 scopus 로고    scopus 로고
    • Comparison of quantitative PCR assays for Escherichia coli targeting rRNA and single copy genes
    • Chern E, Siefring S, Paar J, Doolittle M, Haugland R. 2011. Comparison of quantitative PCR assays for Escherichia coli targeting rRNA and single copy genes. Lett Appl Microbiol 52:298-306. http://dx.doi.org/10.1111/j.1472-765X.2010.03001.x.
    • (2011) Lett Appl Microbiol , vol.52 , pp. 298-306
    • Chern, E.1    Siefring, S.2    Paar, J.3    Doolittle, M.4    Haugland, R.5
  • 35
    • 0034488341 scopus 로고    scopus 로고
    • How quantitative is quantitative PCR with respect to cell counts?
    • Ludwig W, Schleifer K-H. 2000. How quantitative is quantitative PCR with respect to cell counts? Syst Appl Microbiol 23:556-562. http://dx.doi.org/10.1016/S0723-2020(00)80030-2.
    • (2000) Syst Appl Microbiol , vol.23 , pp. 556-562
    • Ludwig, W.1    Schleifer, K.-H.2
  • 36
    • 0037297053 scopus 로고    scopus 로고
    • Real-time PCR method to detect Enterococcus faecalis in water
    • Santo Domingo JW, Siefring SC, Haugland RA. 2003. Real-time PCR method to detect Enterococcus faecalis in water. Biotechnol Lett 25:261-265. http://dx.doi.org/10.1023/A:1022303118122.
    • (2003) Biotechnol Lett , vol.25 , pp. 261-265
    • Santo Domingo, J.W.1    Siefring, S.C.2    Haugland, R.A.3
  • 37
    • 84871860476 scopus 로고    scopus 로고
    • Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples
    • Ryu H, Henson M, Elk M, Toledo-Hernandez C, Griffith J, Blackwood D, Noble R, Gourmelon M, Glassmeyer S, Santo Domingo JW. 2013. Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples. Appl Environ Microbiol 79:196-204. http://dx.doi.org/10.1128/AEM.02802-12.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 196-204
    • Ryu, H.1    Henson, M.2    Elk, M.3    Toledo-Hernandez, C.4    Griffith, J.5    Blackwood, D.6    Noble, R.7    Gourmelon, M.8    Glassmeyer, S.9    Santo Domingo, J.W.10
  • 38
    • 77956550816 scopus 로고    scopus 로고
    • Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR
    • Haugland RA, Varma M, Sivaganesan M, Kelty C, Peed L, Shanks OC. 2010. Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR. Syst Appl Microbiol 33:348-357. http://dx.doi.org/10.1016/j.syapm.2010.06.001.
    • (2010) Syst Appl Microbiol , vol.33 , pp. 348-357
    • Haugland, R.A.1    Varma, M.2    Sivaganesan, M.3    Kelty, C.4    Peed, L.5    Shanks, O.C.6
  • 39
    • 34547597968 scopus 로고    scopus 로고
    • 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach
    • Kildare BJ, Leutenegger CM, McSwain BS, Bambic DG, Rajal VB, Wuertz S. 2007. 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res 41:3701-3715. http://dx.doi.org/10.1016/j.watres.2007.06.037.
    • (2007) Water Res , vol.41 , pp. 3701-3715
    • Kildare, B.J.1    Leutenegger, C.M.2    McSwain, B.S.3    Bambic, D.G.4    Rajal, V.B.5    Wuertz, S.6
  • 40
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of smallsubunit rRNA genes in mixed microbial populations via 5'-nuclease assays
    • Suzuki MT, Taylor LT, DeLong EF. 2000. Quantitative analysis of smallsubunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Appl Environ Microbiol 66:4605-4614. http://dx.doi.org/10.1128/AEM.66.11.4605-4614.2000.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    DeLong, E.F.3
  • 42
    • 84988158999 scopus 로고
    • Diel Nucleic acid synthesis and particulate DNA concentrations: conflicts with division rate estimates by DNA calculation
    • Winn CD, Karl DM. 1986. Diel Nucleic acid synthesis and particulate DNA concentrations: conflicts with division rate estimates by DNA calculation. Limnol Oceanogr 31:637-645. http://dx.doi.org/10.4319/lo.1986.31.3.0637.
    • (1986) Limnol Oceanogr , vol.31 , pp. 637-645
    • Winn, C.D.1    Karl, D.M.2
  • 43
    • 81255127760 scopus 로고    scopus 로고
    • Abundant dissolved genetic material in Artic Sea ice. 1. Extracellular DNA
    • Collins RE, Deming JW. 2011. Abundant dissolved genetic material in Artic Sea ice. 1. Extracellular DNA. Polar Biol 34:1819-1830. http://dx.doi.org/10.1007/s00300-011-1041-y.
    • (2011) Polar Biol , vol.34 , pp. 1819-1830
    • Collins, R.E.1    Deming, J.W.2
  • 44
    • 0002790939 scopus 로고
    • Distribution and molecular weight of dissolved DNA in subtropical estuarine and oceanic environments
    • DeFlaun MF, Paul JH, Jeffrey WH. 1987. Distribution and molecular weight of dissolved DNA in subtropical estuarine and oceanic environments. Mar Ecol Prog Ser 38:65-73. http://dx.doi.org/10.3354/meps038065.
    • (1987) Mar Ecol Prog Ser , vol.38 , pp. 65-73
    • DeFlaun, M.F.1    Paul, J.H.2    Jeffrey, W.H.3
  • 45
    • 0021554683 scopus 로고
    • Genetic material in the marine environment: implication for bacterial DNA
    • Paul JH, Carlson DJ. 1984. Genetic material in the marine environment: implication for bacterial DNA. Limnol Oceanogr 29:1091-1096. http://dx.doi.org/10.4319/lo.1984.29.5.1091.
    • (1984) Limnol Oceanogr , vol.29 , pp. 1091-1096
    • Paul, J.H.1    Carlson, D.J.2
  • 46
    • 79959742139 scopus 로고    scopus 로고
    • 16S rRNA gene sequence analysis of drinking water using RNA and DNA extracts as targets for clone library development
    • Revetta RP, Matlib RS, Santo Domingo JW. 2011. 16S rRNA gene sequence analysis of drinking water using RNA and DNA extracts as targets for clone library development. Curr Microbiol 63:50-59. http://dx.doi.org/10.1007/s00284-011-9938-9.
    • (2011) Curr Microbiol , vol.63 , pp. 50-59
    • Revetta, R.P.1    Matlib, R.S.2    Santo Domingo, J.W.3
  • 47
    • 33645212312 scopus 로고    scopus 로고
    • Identification of active bacterial communities in a model drinking water biofilm system using 16S rRNA-based clone libraries
    • Keinänen-Toivola MM, Revetta RP, Santo Domingo JW. 2006. Identification of active bacterial communities in a model drinking water biofilm system using 16S rRNA-based clone libraries. FEMS Microbiol Lett 257: 182-188. http://dx.doi.org/10.1111/j.1574-6968.2006.00167.x.
    • (2006) FEMS Microbiol Lett , vol.257 , pp. 182-188
    • Keinänen-Toivola, M.M.1    Revetta, R.P.2    Santo Domingo, J.W.3
  • 48
    • 0032846469 scopus 로고    scopus 로고
    • Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapidRNAextraction procedure and RT-PCR
    • Miskin IP, Farrimond P, Head IM. 1999. Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapidRNAextraction procedure and RT-PCR. Microbiology 145:1977-1987. http://dx.doi.org/10.1099/13500872-145-8-1977.
    • (1999) Microbiology , vol.145 , pp. 1977-1987
    • Miskin, I.P.1    Farrimond, P.2    Head, I.M.3
  • 49
    • 33748324500 scopus 로고    scopus 로고
    • Prokaryotic diversity and metabolically active microbial populations in sediments from an active mud volcano in the Gulf of Mexico
    • Martinez RJ, Mills HJ, Story S, Sobecky PA. 2006. Prokaryotic diversity and metabolically active microbial populations in sediments from an active mud volcano in the Gulf of Mexico. Environ Microbiol 8:1783-1796. http://dx.doi.org/10.1111/j.1462-2920.2006.01063.x.
    • (2006) Environ Microbiol , vol.8 , pp. 1783-1796
    • Martinez, R.J.1    Mills, H.J.2    Story, S.3    Sobecky, P.A.4
  • 50
    • 84857453355 scopus 로고    scopus 로고
    • A new molecular approach based on qPCR for the quantification of fecal bacteria in contaminated marine sediments
    • Luna GM, Dell'Anno A, Pietrangeli B, Danovaro R. 2012. A new molecular approach based on qPCR for the quantification of fecal bacteria in contaminated marine sediments. J Biotechnol 157:446-453. http://dx.doi.org/10.1016/j.jbiotec.2011.07.033.
    • (2012) J Biotechnol , vol.157 , pp. 446-453
    • Luna, G.M.1    Dell'Anno, A.2    Pietrangeli, B.3    Danovaro, R.4
  • 51
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction ofDNAandRNAfrom natural environments for analysis of ribosomal DNA-and rRNA-based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ. 2000. Rapid method for coextraction ofDNAandRNAfrom natural environments for analysis of ribosomal DNA-and rRNA-based microbial community composition. Appl Environ Microbiol 66:5488-5491. http://dx.doi.org/10.1128/AEM.66.12.5488-5491.2000.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 52
    • 77956542684 scopus 로고    scopus 로고
    • Linking community profiles, gene expression and N-removal in anammox bioreactors treating municipal anaerobic digestion reject water
    • Park H, Rosenthal A, Ramalingam K, Fillos J, Chandran K. 2010. Linking community profiles, gene expression and N-removal in anammox bioreactors treating municipal anaerobic digestion reject water. Environ Sci Technol 44:6110-6116. http://dx.doi.org/10.1021/es1002956.
    • (2010) Environ Sci Technol , vol.44 , pp. 6110-6116
    • Park, H.1    Rosenthal, A.2    Ramalingam, K.3    Fillos, J.4    Chandran, K.5
  • 53
    • 33644853450 scopus 로고    scopus 로고
    • Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds
    • Ishii S, Ksoll WB, Hicks RE, Sadowsky MJ. 2006. Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds. Appl Environ Microbiol 72:612-621. http://dx.doi.org/10.1128/AEM.72.1.612-621.2006.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 612-621
    • Ishii, S.1    Ksoll, W.B.2    Hicks, R.E.3    Sadowsky, M.J.4
  • 54
    • 0041528249 scopus 로고    scopus 로고
    • Occurrence of Escherichia coli and enterococci in Cladophora (Chlorophyta) in nearshore water and beach sand of Lake Michigan
    • Whitman RL, Shively DA, Pawlik H, Nevers MB, Byappanahalli MN. 2003. Occurrence of Escherichia coli and enterococci in Cladophora (Chlorophyta) in nearshore water and beach sand of Lake Michigan. Appl Environ Microbiol 69:4714-4719. http://dx.doi.org/10.1128/AEM.69.8.4714-4719.2003.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4714-4719
    • Whitman, R.L.1    Shively, D.A.2    Pawlik, H.3    Nevers, M.B.4    Byappanahalli, M.N.5
  • 55
    • 77953557325 scopus 로고    scopus 로고
    • The effects of submerged aquatic vegetation on the persistence of environmental populations of Enterococcus spp
    • Badgley BD, Thomas FI, Harwood VJ. 2010. The effects of submerged aquatic vegetation on the persistence of environmental populations of Enterococcus spp. Environ Microbiol 12:1271-1281. http://dx.doi.org/10.1111/j.1462-2920.2010.02169.x.
    • (2010) Environ Microbiol , vol.12 , pp. 1271-1281
    • Badgley, B.D.1    Thomas, F.I.2    Harwood, V.J.3
  • 56
    • 34547579576 scopus 로고    scopus 로고
    • Identification of pets and raccoons as sources of bacterial contamination of urban storm sewers using a sequence-based bacterial source tracking method
    • Ram JL, Thompson B, Turner C, Nechvatal JM, Sheehan H, Bobrin J. 2007. Identification of pets and raccoons as sources of bacterial contamination of urban storm sewers using a sequence-based bacterial source tracking method. Water Res 41:3605-3614. http://dx.doi.org/10.1016/j.watres.2007.04.013.
    • (2007) Water Res , vol.41 , pp. 3605-3614
    • Ram, J.L.1    Thompson, B.2    Turner, C.3    Nechvatal, J.M.4    Sheehan, H.5    Bobrin, J.6
  • 57
    • 77957021015 scopus 로고    scopus 로고
    • Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination
    • Soller JA, Schoen ME, Bartrand T, Ravenscroft JE, Ashbolt NJ. 2010. Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination. Water Res 44:4674-4691. http://dx.doi.org/10.1016/j.watres.2010.06.049.
    • (2010) Water Res , vol.44 , pp. 4674-4691
    • Soller, J.A.1    Schoen, M.E.2    Bartrand, T.3    Ravenscroft, J.E.4    Ashbolt, N.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.