메뉴 건너뛰기




Volumn 145, Issue 8, 1999, Pages 1977-1987

Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapid RNA extraction procedure and RT-PCR

Author keywords

Candidate division OP5; Freshwater sediment; Novel lineages; rRNA mRNA; RT PCR

Indexed keywords

BACTERIAL RNA; FRESH WATER; MESSENGER RNA; RIBOSOME RNA; RNA 16S;

EID: 0032846469     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-145-8-1977     Document Type: Article
Times cited : (105)

References (71)
  • 1
    • 3543006508 scopus 로고    scopus 로고
    • Growth rate regulation of rRNA content of a marine Synechococcus (Cyanobacterium) strain
    • Binder, B. J. & Liu, Y. C. (1998). Growth rate regulation of rRNA content of a marine Synechococcus (Cyanobacterium) strain. Appl Environ Microbiol 64, 3346-3351.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3346-3351
    • Binder, B.J.1    Liu, Y.C.2
  • 2
    • 0023064120 scopus 로고
    • Creating a ribonuclease-free environment
    • Blumberg, D. D. (1987). Creating a ribonuclease-free environment. Methods Enzymol 152, 20-24.
    • (1987) Methods Enzymol , vol.152 , pp. 20-24
    • Blumberg, D.D.1
  • 3
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganism and microbial population shifts associated with deforestation
    • Borneman, J. & Triplett, E. W. (1997). Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganism and microbial population shifts associated with deforestation. Appl Environ Microbiol 53, 2647-2653.
    • (1997) Appl Environ Microbiol , vol.53 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 5
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal gene from Escherichia colt
    • Brosius, J., Palmer, J. L., Kennedy, J. P. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal gene from Escherichia colt. Proc Natl Acad Sci USA 75, 4801-4805.
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, J.L.2    Kennedy, J.P.3    Noller, H.F.4
  • 6
    • 0021106293 scopus 로고
    • Nucleotide sequence of a gene from the Pseudomonas transposon Tn501 encoding mercuric reductase
    • Brown, N. L., Ford, S. J., Pridmore, R. D. & Fritzinger, D. C. (1983). Nucleotide sequence of a gene from the Pseudomonas transposon Tn501 encoding mercuric reductase. Biochemistry 22, 4089-4095.
    • (1983) Biochemistry , vol.22 , pp. 4089-4095
    • Brown, N.L.1    Ford, S.J.2    Pridmore, R.D.3    Fritzinger, D.C.4
  • 7
    • 0031763993 scopus 로고    scopus 로고
    • Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment
    • Coolen, M. J. L. & Overmann, J. (1998). Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment. Appl Environ Microbiol 64, 4513-4521.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4513-4521
    • Coolen, M.J.L.1    Overmann, J.2
  • 8
    • 0024626175 scopus 로고    scopus 로고
    • Sedimentary record of polycyclic aromatic hydrocarbons in the Windermere catchment
    • Cranwell, P. A. & Koul, V. K. (1998). Sedimentary record of polycyclic aromatic hydrocarbons in the Windermere catchment. Water Res 23, 275-283.
    • (1998) Water Res , vol.23 , pp. 275-283
    • Cranwell, P.A.1    Koul, V.K.2
  • 9
    • 79955433826 scopus 로고
    • RNA synthesis and processing in Eukaryotes
    • Scientific American Books
    • Darnell, J., Lodish, H. & Baltimore, D. (1986). RNA synthesis and processing in Eukaryotes. In Molecular Cell Biology, pp. 305-369. Scientific American Books.
    • (1986) Molecular Cell Biology , pp. 305-369
    • Darnell, J.1    Lodish, H.2    Baltimore, D.3
  • 10
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong, E. F., Franks, D. G. & Yayanos, A. A. (1993). Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol Oceanogr 38, 924-934.
    • (1993) Limnol Oceanogr , vol.38 , pp. 924-934
    • DeLong, E.F.1    Franks, D.G.2    Yayanos, A.A.3
  • 11
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M. A., Hugenholtz, P., Haack, S. K. & Pace, N. R. (1998). Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64, 3869-3877.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 12
    • 0024444791 scopus 로고
    • Isolation and complete nucleotide determination of entire genes. Characterisation of a gene coding for 16S ribosomal RNA
    • Edwards, U., Rogall, T., Blöcker, H., Emde, M. & Böttger, E. C. (1988). Isolation and complete nucleotide determination of entire genes. Characterisation of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843-7853.
    • (1988) Nucleic Acids Res , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blöcker, H.3    Emde, M.4    Böttger, E.C.5
  • 13
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package
    • Felsenstein, J. (1989). PHYLIP-phylogeny inference package. Cladistics 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 14
    • 0029805854 scopus 로고    scopus 로고
    • Direct ribosome isolation from soil to extract bacterial rRNA for community analysis
    • Felske, A., Engelen, B., Nübel, U. & Backhaus, H. (1996). Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl Environ Microbiol 62, 4162-4167.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4162-4167
    • Felske, A.1    Engelen, B.2    Nübel, U.3    Backhaus, H.4
  • 15
    • 0031909733 scopus 로고    scopus 로고
    • Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
    • Felske, A., Wolterink, A., van Lis, R. & Akkermans, A. D. L. (1998). Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl Environ Microbiol 64, 871-879.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 871-879
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    Akkermans, A.D.L.4
  • 16
    • 0027231336 scopus 로고
    • Quantitative relationship between napthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites
    • Fleming, J. T., Sanseverino, J. & Sayler, G. S. (1993). Quantitative relationship between napthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ Sci Technol 27, 1068-1074.
    • (1993) Environ Sci Technol , vol.27 , pp. 1068-1074
    • Fleming, J.T.1    Sanseverino, J.2    Sayler, G.S.3
  • 17
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
    • Fuhrman, J. A., McCallum, K. & Davis, A. A. (1993). Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl Environ Microbiol 59, 1294-1302.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 18
    • 0000467183 scopus 로고
    • Characterisation of marine prokaryotic communities via DNA and RNA
    • Fuhrman, J. A., Lee, S. H., Masuchi, Y., Davis, A. A. & Wilcox, R. M. (1994). Characterisation of marine prokaryotic communities via DNA and RNA. Microb Ecol 28, 133-145.
    • (1994) Microb Ecol , vol.28 , pp. 133-145
    • Fuhrman, J.A.1    Lee, S.H.2    Masuchi, Y.3    Davis, A.A.4    Wilcox, R.M.5
  • 19
  • 20
    • 0000162807 scopus 로고
    • Microbial diversity in oceanic systems: RRNA approaches to the study of unculturable microbes
    • NATO ASI Series, Series G, Ecological Sciences, Edited by I. Joint. Berlin: Springer
    • Giovannoni, S. J., Mullins, T. D. & Field, K. G. (1995). Microbial diversity in oceanic systems: rRNA approaches to the study of unculturable microbes. In Molecular Ecology of Aquatic Microbes. NATO ASI Series, Series G, Ecological Sciences, No. 38, pp. 217-248. Edited by I. Joint. Berlin: Springer.
    • (1995) Molecular Ecology of Aquatic Microbes , vol.38 , pp. 217-248
    • Giovannoni, S.J.1    Mullins, T.D.2    Field, K.G.3
  • 22
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans
    • Gordon, D. A. & Giovannoni, S. J. (1996). Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans. Appl Environ Microbiol 62, 1171-1177.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 23
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • Gray, J. P. & Herwig, R. P. (1996). Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 62, 4049-4059.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4049-4059
    • Gray, J.P.1    Herwig, R.P.2
  • 24
    • 0029799964 scopus 로고    scopus 로고
    • Phylogeny of Prosthecobacter, the fusiform Caulobacters: Members of a recently discovered division of the Bacteria
    • Hedlund, B. P., Gosink, J. J. & Staley, J. T. (1996). Phylogeny of Prosthecobacter, the fusiform Caulobacters: Members of a recently discovered division of the Bacteria. Int J Syst Bacteriol 46, 960-966.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 960-966
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 25
    • 0030778930 scopus 로고    scopus 로고
    • Verrucomicrobia div. nov., a new division of the Bacteria containing three new species of Prosthecobacter
    • Hedlund, B. P., Gosink, J. J. & Staley, J. T. (1997). Verrucomicrobia div. nov., a new division of the Bacteria containing three new species of Prosthecobacter. Antonie Leeuwenhoek 72, 29-38.
    • (1997) Antonie Leeuwenhoek , vol.72 , pp. 29-38
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 26
    • 0027502979 scopus 로고
    • Polymerase chain reaction amplification of napthalene-catabolic and 16S ribosomal-RNA gene-sequences from indigenous sediment bacteria
    • Herrick, J. B., Madsen, E. L., Batt, C. L. & Ghiorse, W. C. (1993). Polymerase chain reaction amplification of napthalene-catabolic and 16S ribosomal-RNA gene-sequences from indigenous sediment bacteria. Appl Environ Microbiol 59, 687-694.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 687-694
    • Herrick, J.B.1    Madsen, E.L.2    Batt, C.L.3    Ghiorse, W.C.4
  • 27
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack Mountain lakes as revealed by 16S rRNA gene sequences
    • Hiorns, W. D., Methé, B. A., Nierzwicki-Bauer, A. & Zehr, J. P. (1997). Bacterial diversity in Adirondack Mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63, 2957-2960.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methé, B.A.2    Nierzwicki-Bauer, A.3    Zehr, J.P.4
  • 28
    • 0026616321 scopus 로고
    • Bacterioplankton community structure and dynamics after large-scale release of nonindigenous bacteria as revealed by low-molecular-weight-RNA analysis
    • Höfle, M. G. (1992). Bacterioplankton community structure and dynamics after large-scale release of nonindigenous bacteria as revealed by low-molecular-weight-RNA analysis. Appl Environ Microbiol 58, 3387-3394.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 3387-3394
    • Höfle, M.G.1
  • 29
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K. L. & Pace, N. R. (1998a). Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180, 366-376.
    • (1998) J Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 30
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B. M. & Pace, N. R. (1998b). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180, 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 31
    • 0030613344 scopus 로고    scopus 로고
    • Novel anaerobic ultramicrobacterium belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
    • Janssen, P. H., Schuhmann, A., Morschel, E. & Rainey, F. A. (1997). Novel anaerobic ultramicrobacterium belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 63, 1382-1388.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1382-1388
    • Janssen, P.H.1    Schuhmann, A.2    Morschel, E.3    Rainey, F.A.4
  • 32
    • 0028361676 scopus 로고
    • Improved method for recovery of mRNA from aquatic samples and its application to detection of mer expression
    • Jeffrey, W. H., Nazaret, S. & von Haven, R. (1994). Improved method for recovery of mRNA from aquatic samples and its application to detection of mer expression. Appl Environ Microbiol 60, 1814-1821.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1814-1821
    • Jeffrey, W.H.1    Nazaret, S.2    Von Haven, R.3
  • 33
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H. N. Munro. New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 34
    • 0026531418 scopus 로고
    • Variations in rRNA content of marine Vibrio spp. during starvation-survival and recovery
    • Kramer, J. G. & Singleton, F. L. (1992). Variations in rRNA content of marine Vibrio spp. during starvation-survival and recovery. Appl Environ Microbiol 58, 201-207.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 201-207
    • Kramer, J.G.1    Singleton, F.L.2
  • 35
    • 0027282946 scopus 로고
    • Measurement of rRNA variations in natural communities of microorganisms on the southeastern US continental shelf
    • Kramer, J. G. & Singleton, F. L. (1993). Measurement of rRNA variations in natural communities of microorganisms on the southeastern US continental shelf. Appl Environ Microbiol 59, 2430-2436.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2430-2436
    • Kramer, J.G.1    Singleton, F.L.2
  • 37
    • 0028082720 scopus 로고
    • Single-cell RNA content of natural marine planktonic bacteria measured by hybridization with multiple 16S rRNA-targetted fluorescent probes
    • Lee, S. & Kemp, P. F. (1994). Single-cell RNA content of natural marine planktonic bacteria measured by hybridization with multiple 16S rRNA-targetted fluorescent probes. Limnol Oceanogr 39, 869-879.
    • (1994) Limnol Oceanogr , vol.39 , pp. 869-879
    • Lee, S.1    Kemp, P.F.2
  • 38
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
    • Lee, S.-Y., Bollinger, J., Bezdicek, D. & Ogram, A. (1996). Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl Environ Microbiol 62, 3787-3793.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3787-3793
    • Lee, S.-Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 39
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W. & Stackebrandt, E. (1992). Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J Bacteriol 174, 5072-5078.
    • (1992) J Bacteriol , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 41
    • 0031726436 scopus 로고    scopus 로고
    • Quantification of bacterial mRNA involved in degradation of 1,2,4-trichlorobenzene by Pseudomonas sp. strain 51 from liquid culture and from river sediment by Reverse Transcriptase PCR (RT/PCR)
    • Meckenstock, R., Steinle, P., van der Meer, J. R. & Snozzi, M. (1998). Quantification of bacterial mRNA involved in degradation of 1,2,4-trichlorobenzene by Pseudomonas sp. strain 51 from liquid culture and from river sediment by reverse transcriptase PCR (RT/PCR). FEMS Microbiol Lett 167, 123-129.
    • (1998) FEMS Microbiol Lett , vol.167 , pp. 123-129
    • Meckenstock, R.1    Steinle, P.2    Van Der Meer, J.R.3    Snozzi, M.4
  • 43
    • 0027469654 scopus 로고
    • Direct extraction and purification of rRNA for ecological studies
    • Moran, M. A., Torsvik, V. L., Torsvik, T. & Hodson, R. E. (1993). Direct extraction and purification of rRNA for ecological studies. Appl Environ Microbiol 59, 915-918.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 915-918
    • Moran, M.A.1    Torsvik, V.L.2    Torsvik, T.3    Hodson, R.E.4
  • 44
    • 0001983949 scopus 로고
    • The polymerase chain reaction in an anemic mode: How to avoid cold oligodeoxyribonuclear fusion
    • Mullis, K. B. (1991). The polymerase chain reaction in an anemic mode: how to avoid cold oligodeoxyribonuclear fusion. PCR Methods Appl 1, 1-4.
    • (1991) PCR Methods Appl , vol.1 , pp. 1-4
    • Mullis, K.B.1
  • 45
    • 0028116029 scopus 로고
    • merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatization
    • Nazaret, S., Jeffery, W. H., Saouter, E., von Haven, R. & Barkay, T. (1994). merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatization. Appl Environ Microbiol 60, 4059-4065.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 4059-4065
    • Nazaret, S.1    Jeffery, W.H.2    Saouter, E.3    Von Haven, R.4    Barkay, T.5
  • 46
    • 0032471781 scopus 로고    scopus 로고
    • Patterns and governing forces in aquatic microbial communities
    • Nold, S. C. & Zwart, G. (1998). Patterns and governing forces in aquatic microbial communities. Aquatic Ecology 32, 17-35.
    • (1998) Aquatic Ecology , vol.32 , pp. 17-35
    • Nold, S.C.1    Zwart, G.2
  • 47
    • 12744281935 scopus 로고
    • The extraction and purification of microbial DNA from sediments
    • Ogram, A., Sayler, G. S. & Barkay, T. (1987). The extraction and purification of microbial DNA from sediments. J Microbiol Methods 1, 57-66.
    • (1987) J Microbiol Methods , vol.1 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 48
    • 0028851170 scopus 로고
    • Isolation and characterisation of RNA from low-biomass deep-subsurface sediments
    • Ogram, A., Sun, W., Brockman, F. J. & Fredrickson, J. K. (1995). Isolation and characterisation of RNA from low-biomass deep-subsurface sediments. Appl Environ Microbiol 61, 763-768.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 763-768
    • Ogram, A.1    Sun, W.2    Brockman, F.J.3    Fredrickson, J.K.4
  • 50
    • 0025919297 scopus 로고
    • Detection of gene expression in genetically engineered microorganisms and natural populations in the marine environment by mRNA analysis
    • Richard, S. L. & Paul, J. H. (1991). Detection of gene expression in genetically engineered microorganisms and natural populations in the marine environment by mRNA analysis. Appl Environ Microbiol 57, 1721-1728.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1721-1728
    • Richard, S.L.1    Paul, J.H.2
  • 51
    • 0027511613 scopus 로고
    • Gene expression per gene dose, a specific measure of gene expression in aquatic microorganisms
    • Richard, S. L. & Paul, J. H. (1993). Gene expression per gene dose, a specific measure of gene expression in aquatic microorganisms. Appl Environ Microbiol 59, 451-457.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 451-457
    • Richard, S.L.1    Paul, J.H.2
  • 52
    • 0024553747 scopus 로고
    • Rapid extraction of bacterial genomic DNA with guanidinium thiocyanate
    • Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidinium thiocyanate. Lett Appl Bacteriol 8, 151-156.
    • (1989) Lett Appl Bacteriol , vol.8 , pp. 151-156
    • Pitcher, D.G.1    Saunders, N.A.2    Owen, R.J.3
  • 53
    • 0029759760 scopus 로고    scopus 로고
    • Rapid extraction of DNA and RNA from sediments with a novel hydroxyapatite spin-column method
    • Purdy, K. J., Embley, T. M., Takii, S. & Nedwell, D. B. (1996). Rapid extraction of DNA and RNA from sediments with a novel hydroxyapatite spin-column method. Appl Environ Microbiol 62, 3905-3907.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3905-3907
    • Purdy, K.J.1    Embley, T.M.2    Takii, S.3    Nedwell, D.B.4
  • 54
    • 0013927706 scopus 로고
    • Ribonucleic acid composition of bacteria as a function of growth rate
    • Rosset, R., Julien, J. & Monier, M. (1966). Ribonucleic acid composition of bacteria as a function of growth rate. J Mol Biol 18, 308-320.
    • (1966) J Mol Biol , vol.18 , pp. 308-320
    • Rosset, R.1    Julien, J.2    Monier, M.3
  • 55
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 56
    • 0023473336 scopus 로고
    • Verrucomicrobium spinosum gen. nov., sp. nov. : A fimbriated prosthecate bacterium
    • Schlesner, H. (1987). Verrucomicrobium spinosum gen. nov., sp. nov. : a fimbriated prosthecate bacterium. Syst Appl Microbiol 10, 54-56.
    • (1987) Syst Appl Microbiol , vol.10 , pp. 54-56
    • Schlesner, H.1
  • 57
    • 0028334548 scopus 로고
    • The development of media suitable for the microorganisms morphologically resembling Planctomyces spp., Pirellula spp., and other Planctomycetales from various aquatic habitats using dilute media
    • Schlesner, H. (1994). The development of media suitable for the microorganisms morphologically resembling Planctomyces spp., Pirellula spp., and other Planctomycetales from various aquatic habitats using dilute media. Syst Appl Microbiol 17, 135-145.
    • (1994) Syst Appl Microbiol , vol.17 , pp. 135-145
    • Schlesner, H.1
  • 58
    • 0027458468 scopus 로고
    • Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification
    • Smalla, K., Cresswell, N., Mendoca-Hagler, L. C., Walters, A. & van Elsas, J. D. (1993). Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification. J Appl Bacterial 74, 78-85.
    • (1993) J Appl Bacterial , vol.74 , pp. 78-85
    • Smalla, K.1    Cresswell, N.2    Mendoca-Hagler, L.C.3    Walters, A.4    Van Elsas, J.D.5
  • 59
    • 0028598812 scopus 로고
    • The genetic data environment an expandable GUI for multiple sequence analysis
    • Smith, S. W., Overbeek, R., Woese, C. R., Gilbert, W. & Gillevet, P. M. (1994). The genetic data environment an expandable GUI for multiple sequence analysis. Comput Appl Biosci 10, 671-675.
    • (1994) Comput Appl Biosci , vol.10 , pp. 671-675
    • Smith, S.W.1    Overbeek, R.2    Woese, C.R.3    Gilbert, W.4    Gillevet, P.M.5
  • 60
    • 0000571950 scopus 로고
    • The order Planctomycetales and the genera Planctomyces, Pirellula, Gemmata and Isosphaera
    • Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer
    • Staley, J. T., Fuerst, J. A., Giovannoni, S. J. & Schlesner, H. (1992). The order Planctomycetales and the genera Planctomyces, Pirellula, Gemmata and Isosphaera. In The Prokaryotes, pp. 3701-3731. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
    • (1992) The Prokaryotes , pp. 3701-3731
    • Staley, J.T.1    Fuerst, J.A.2    Giovannoni, S.J.3    Schlesner, H.4
  • 61
    • 0029667164 scopus 로고    scopus 로고
    • Distribution of sulfate-reducing bacteria in a stratified fjord (Manager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments
    • Teske, A., Wawer, C., Muyzer, G. & Ramsing, N. B. (1996). Distribution of sulfate-reducing bacteria in a stratified fjord (Manager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl Environ Microbiol 62, 1405-1415.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1405-1415
    • Teske, A.1    Wawer, C.2    Muyzer, G.3    Ramsing, N.B.4
  • 62
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substrates in sediments for polymerase chain reaction
    • Tsai, Y.-L. & Olson, B. H. (1992). Rapid method for separation of bacterial DNA from humic substrates in sediments for Polymerase Chain Reaction. Appl Environ Microbiol 58, 2292-2295.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2292-2295
    • Tsai, Y.-L.1    Olson, B.H.2
  • 63
    • 0027369807 scopus 로고
    • Simple method of concentrating Enteroviruses and Hepatitis A virus from sewage and ocean water for rapid detection by reverse transcriptase-polymerase chain reaction
    • Tsai, Y.-L., Tran, B., Sangermano, L. R. & Palmer, C. L. (1993). Simple method of concentrating Enteroviruses and Hepatitis A virus from sewage and ocean water for rapid detection by reverse transcriptase-polymerase chain reaction. Appl Environ Microbiol 59, 3488-3491.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3488-3491
    • Tsai, Y.-L.1    Tran, B.2    Sangermano, L.R.3    Palmer, C.L.4
  • 64
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soyabean field
    • Ueda, T., Suga, Y. & Matsuguchi, T. (1995). Molecular phylogenetic analysis of a soil microbial community in a soyabean field. Eur J Soil Sci 46, 415-421.
    • (1995) Eur J Soil Sci , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Matsuguchi, T.3
  • 65
    • 0028509254 scopus 로고
    • Treecon for windows -a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer, Y. & de Wachter, R. (1994). Treecon for windows -a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
    • (1994) Comput Appl Biosci , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2
  • 66
    • 85143848022 scopus 로고
    • Ribosomal RNA analysis of microorganisms as they occur in nature
    • Ward, D. M., Bateson, M. M., Weller, R. & Ruff-Roberts, A. L. (1992). Ribosomal RNA analysis of microorganisms as they occur in nature. Adv Microb Ecol 12, 219-286.
    • (1992) Adv Microb Ecol , vol.12 , pp. 219-286
    • Ward, D.M.1    Bateson, M.M.2    Weller, R.3    Ruff-Roberts, A.L.4
  • 67
    • 0029584840 scopus 로고
    • Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria
    • Ward-Rainey, N., Rainey, F. A., Schlesner, H. & Stackebrandt, E. (1995). Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria. Microbiology 141, 3247-3250.
    • (1995) Microbiology , vol.141 , pp. 3247-3250
    • Ward-Rainey, N.1    Rainey, F.A.2    Schlesner, H.3    Stackebrandt, E.4
  • 68
    • 0024320129 scopus 로고
    • Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA
    • Weller, R. & Ward, D. M. (1989). Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA. Appl Environ Microbiol 55, 1818-1822.
    • (1989) Appl Environ Microbiol , vol.55 , pp. 1818-1822
    • Weller, R.1    Ward, D.M.2
  • 69
    • 0030613347 scopus 로고    scopus 로고
    • Bacterial diversity of a Carolina Bay as determined by 16S rRNA gene analysis : Confirmation of novel taxa
    • Wise, M. G., McArthur, J. V. & Shimkets. L. J. (1997). Bacterial diversity of a Carolina Bay as determined by 16S rRNA gene analysis : confirmation of novel taxa. Appl Environ Microbiol 63, 1505-1514.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1505-1514
    • Wise, M.G.1    McArthur, J.V.2    Shimkets, L.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.