-
1
-
-
23744453852
-
Host species-specific metabolic fingerprint database for enterococci and Escherichia coli and its application to identify sources of fecal contamination in surface waters
-
Ahmed W., Neller R., and Katouli M. Host species-specific metabolic fingerprint database for enterococci and Escherichia coli and its application to identify sources of fecal contamination in surface waters. Appl. Environ. Microbiol. 71 8 (2005) 4461-4468
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.8
, pp. 4461-4468
-
-
Ahmed, W.1
Neller, R.2
Katouli, M.3
-
2
-
-
33845547793
-
Multilocus sequence typing supports the hypothesis that cow- and human-associated Salmonella isolates represent distinct and overlapping populations
-
Alcaine S.D., Soyer Y., Warnick L.D., Su W.-L., Sukhnanand S., Richards J., Fortes E.D., McDonough P., Root T.P., Dumas N.B., Gröhn Y., and Wiedmann M. Multilocus sequence typing supports the hypothesis that cow- and human-associated Salmonella isolates represent distinct and overlapping populations. Appl. Environ. Microbiol. 72 12 (2006) 7575-7585
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.12
, pp. 7575-7585
-
-
Alcaine, S.D.1
Soyer, Y.2
Warnick, L.D.3
Su, W.-L.4
Sukhnanand, S.5
Richards, J.6
Fortes, E.D.7
McDonough, P.8
Root, T.P.9
Dumas, N.B.10
Gröhn, Y.11
Wiedmann, M.12
-
3
-
-
20444419320
-
Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments
-
Anderson K.L., Whitlock J.E., and Harwood V.J. Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments. Appl. Environ. Microbiol. 71 (2005) 3041-3048
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3041-3048
-
-
Anderson, K.L.1
Whitlock, J.E.2
Harwood, V.J.3
-
4
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Bäckhed F., Ley R.E., Sonnenburg J.L., Peterson D.A., and Gordon J.I. Host-bacterial mutualism in the human intestine. Science 307 5717 (2005) 1915-1920
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1915-1920
-
-
Bäckhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
5
-
-
1942475902
-
Coliform dynamics and the implications for source tracking
-
Barnes B., and Gordon D.M. Coliform dynamics and the implications for source tracking. Environ. Microbiol. 6 5 (2004) 501-509
-
(2004)
Environ. Microbiol.
, vol.6
, Issue.5
, pp. 501-509
-
-
Barnes, B.1
Gordon, D.M.2
-
6
-
-
0033774937
-
A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard A.E., and Field K.G. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66 10 (2000) 4571-4574
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, Issue.10
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
7
-
-
33748772520
-
Integrated analysis of established and novel microbial and chemical methods for microbial source tracking
-
Blanch A.R., Belanche-Munoz L., Bonjoch X., Ebdon J., Gantzer C., Lucena F., Ottoson J., Kourtis C., Iversen A., Kuhn I., Moce L., Muniesa M., Schwartzbrod J., Skraber S., Papageorgiou G.T., Taylor H., Wallis J., and Jofre J. Integrated analysis of established and novel microbial and chemical methods for microbial source tracking. Appl. Environ. Microbiol. 72 9 (2006) 5915-5926
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.9
, pp. 5915-5926
-
-
Blanch, A.R.1
Belanche-Munoz, L.2
Bonjoch, X.3
Ebdon, J.4
Gantzer, C.5
Lucena, F.6
Ottoson, J.7
Kourtis, C.8
Iversen, A.9
Kuhn, I.10
Moce, L.11
Muniesa, M.12
Schwartzbrod, J.13
Skraber, S.14
Papageorgiou, G.T.15
Taylor, H.16
Wallis, J.17
Jofre, J.18
-
8
-
-
0037442386
-
Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California
-
Boehm A.B., Fuhrman J.A., Mrse R.D., and Grant S.B. Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California. Environ. Sci. Technol. 37 (2003) 673-680
-
(2003)
Environ. Sci. Technol.
, vol.37
, pp. 673-680
-
-
Boehm, A.B.1
Fuhrman, J.A.2
Mrse, R.D.3
Grant, S.B.4
-
9
-
-
0037401015
-
Detection of bacterial pathogens in environmental samples using DNA microarrays
-
Call D.R., Borucki M., and Loge F. Detection of bacterial pathogens in environmental samples using DNA microarrays. J. Microbiol. Methods 53 (2003) 235-243
-
(2003)
J. Microbiol. Methods
, vol.53
, pp. 235-243
-
-
Call, D.R.1
Borucki, M.2
Loge, F.3
-
10
-
-
23744453573
-
Specificity of a Bacteroides thetaiotaomicron marker for human feces
-
Carson C.A., Christiansen J.M., Yampara-Iquise H., Benson V.W., Baffaut C., Davis J.V., Broz R.R., Kurtz W.B., Rogers W.M., and Fales W.H. Specificity of a Bacteroides thetaiotaomicron marker for human feces. Appl. Environ. Microbiol. 71 8 (2005) 4945-4949
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.8
, pp. 4945-4949
-
-
Carson, C.A.1
Christiansen, J.M.2
Yampara-Iquise, H.3
Benson, V.W.4
Baffaut, C.5
Davis, J.V.6
Broz, R.R.7
Kurtz, W.B.8
Rogers, W.M.9
Fales, W.H.10
-
11
-
-
32044447431
-
Real-time PCR quantification of human adenoviruses in urban rivers indicates genome prevalence and low infectivity
-
Choi S., and Jiang S. Real-time PCR quantification of human adenoviruses in urban rivers indicates genome prevalence and low infectivity. Appl. Environ. Microbiol. 71 11 (2005) 7426-7433
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.11
, pp. 7426-7433
-
-
Choi, S.1
Jiang, S.2
-
12
-
-
27744578054
-
Evaluation of microbial indicators for the determination of bacterial groundwater contamination sources
-
Cimenti M., Biswas N., Bewtra J.K., and Hubberstey A. Evaluation of microbial indicators for the determination of bacterial groundwater contamination sources. Water Air Soil Pollut. 168 1-4 (2005) 157-169
-
(2005)
Water Air Soil Pollut.
, vol.168
, Issue.1-4
, pp. 157-169
-
-
Cimenti, M.1
Biswas, N.2
Bewtra, J.K.3
Hubberstey, A.4
-
13
-
-
33845810487
-
Water quality indicators and the risk of illness at beaches with nonpoint sources of fecal contamination
-
Colford J.M., Wade T.J., Schiff K.C., Wright C.C., Griffith J.F., Sandhu S.K., Burns S., Sobsey M., Lovelace G., and Weisberg S.B. Water quality indicators and the risk of illness at beaches with nonpoint sources of fecal contamination. Epidemiology 18 1 (2007) 27-35
-
(2007)
Epidemiology
, vol.18
, Issue.1
, pp. 27-35
-
-
Colford, J.M.1
Wade, T.J.2
Schiff, K.C.3
Wright, C.C.4
Griffith, J.F.5
Sandhu, S.K.6
Burns, S.7
Sobsey, M.8
Lovelace, G.9
Weisberg, S.B.10
-
16
-
-
33745132756
-
Development and applications of microbial ecogenomic indicators for monitoring water quality
-
Devereux R., Rublee P., Paul J.H., Field K.G., and Santo Domingo J.W. Development and applications of microbial ecogenomic indicators for monitoring water quality. Environ. Monit. Assess. 116 1-3 (2006) 459-479
-
(2006)
Environ. Monit. Assess.
, vol.116
, Issue.1-3
, pp. 459-479
-
-
Devereux, R.1
Rublee, P.2
Paul, J.H.3
Field, K.G.4
Santo Domingo, J.W.5
-
17
-
-
4644301880
-
Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
-
Dick L.K., and Field K.G. Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl. Environ. Microbiol. 70 9 (2004) 5695-5697
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, Issue.9
, pp. 5695-5697
-
-
Dick, L.K.1
Field, K.G.2
-
18
-
-
33748554200
-
Geographical stability of enterococcal antibiotic resistance profiles in Europe and its implications for the identification of fecal sources
-
Ebdon J.E., and Taylor H.D. Geographical stability of enterococcal antibiotic resistance profiles in Europe and its implications for the identification of fecal sources. Environ. Sci. Technol. 40 17 (2006) 5327-5332
-
(2006)
Environ. Sci. Technol.
, vol.40
, Issue.17
, pp. 5327-5332
-
-
Ebdon, J.E.1
Taylor, H.D.2
-
19
-
-
34547401084
-
-
Edge, T.A., Hill, S., 2007. Multiple lines of evidence to identify the source of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario. Water Res., in press.
-
-
-
-
20
-
-
34547439495
-
-
Edge, T.A., Schaefer, K.A., 2006. Microbial source tracking in aquatic ecosystems: the state of the science and an assessment of needs. National Water Research Institute, Burlington, Ontario. NWRI Scientific Assessment Report Series No. 7 and Linking Water Science to Policy Workshop Series, 23pp.
-
-
-
-
21
-
-
34547531503
-
-
Field, K., Samadpour, M., 2007. Fecal source tracking, the indicator paradigm, and managing water quality. Water Res., in press.
-
-
-
-
22
-
-
17444394882
-
Molecular assays for targeting human and bovine enteric viruses in coastal waters and their application for library-independent source tracking
-
Fong T.-T., Griffin D.W., and Lipp E.K. Molecular assays for targeting human and bovine enteric viruses in coastal waters and their application for library-independent source tracking. Appl. Environ. Microbiol. 71 4 (2005) 2070-2078
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.4
, pp. 2070-2078
-
-
Fong, T.-T.1
Griffin, D.W.2
Lipp, E.K.3
-
23
-
-
0345269728
-
The use of chemical and molecular microbial indicators for faecal source identification
-
Gilpin B., James T., Nourozi F., Saunders D., Scholes P., and Savill M. The use of chemical and molecular microbial indicators for faecal source identification. Water Sci. Technol. 47 3 (2003) 39-43
-
(2003)
Water Sci. Technol.
, vol.47
, Issue.3
, pp. 39-43
-
-
Gilpin, B.1
James, T.2
Nourozi, F.3
Saunders, D.4
Scholes, P.5
Savill, M.6
-
24
-
-
33747480588
-
Regional public health cost estimates of contaminated coastal waters: a case study of gastroenteritis at southern California Beaches
-
Givens S., Pendleton L., and Boehm A.B. Regional public health cost estimates of contaminated coastal waters: a case study of gastroenteritis at southern California Beaches. Environ. Sci. Technol. 40 16 (2006) 4851-4858
-
(2006)
Environ. Sci. Technol.
, vol.40
, Issue.16
, pp. 4851-4858
-
-
Givens, S.1
Pendleton, L.2
Boehm, A.B.3
-
25
-
-
22344439489
-
Transport of chemical and microbial compounds from known wastewater discharges: potential for use as indicators of human fecal contamination
-
Glassmeyer S.T., Furlong E.T., Kolpin D.W., Cahill J.D., Zaugg S.D., Werner S.L., Meyer M.T., and Kryak D.D. Transport of chemical and microbial compounds from known wastewater discharges: potential for use as indicators of human fecal contamination. Environ. Sci. Technol. 39 14 (2005) 5157-5169
-
(2005)
Environ. Sci. Technol.
, vol.39
, Issue.14
, pp. 5157-5169
-
-
Glassmeyer, S.T.1
Furlong, E.T.2
Kolpin, D.W.3
Cahill, J.D.4
Zaugg, S.D.5
Werner, S.L.6
Meyer, M.T.7
Kryak, D.D.8
-
26
-
-
0036622654
-
Use of classification and regression tree (CART) analysis with chemical faecal indicators to determine sources of contamination
-
Gregor J., Garrett N., Gilpin B., Randall C., and Saunders D. Use of classification and regression tree (CART) analysis with chemical faecal indicators to determine sources of contamination. N.Z.J. Mar. Freshwater Res. 36 (2002) 387-398
-
(2002)
N.Z.J. Mar. Freshwater Res.
, vol.36
, pp. 387-398
-
-
Gregor, J.1
Garrett, N.2
Gilpin, B.3
Randall, C.4
Saunders, D.5
-
27
-
-
33745161847
-
A virulence and antimicrobial resistance DNA microarray detects a high frequency of virulence genes in Escherichia coli isolates from Great Lakes recreational waters
-
Hamelin K., Bruant G., El Shaarawi A., Hill S., Edge T.A., Bekal S., Fairbrother J.M., Harel J., Maynard C., Masson L., and Brousseau R. A virulence and antimicrobial resistance DNA microarray detects a high frequency of virulence genes in Escherichia coli isolates from Great Lakes recreational waters. Appl. Environ. Microbiol. 72 (2006) 4200-4206
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 4200-4206
-
-
Hamelin, K.1
Bruant, G.2
El Shaarawi, A.3
Hill, S.4
Edge, T.A.5
Bekal, S.6
Fairbrother, J.M.7
Harel, J.8
Maynard, C.9
Masson, L.10
Brousseau, R.11
-
28
-
-
33846457919
-
Occurrence of virulence and antimicrobial resistance genes in Escherichia coli from different aquatic ecosystems within the St. Clair River and Detroit River areas
-
Hamelin K., Bruant G., El Shaarawi A., Hill S., Edge T.A., Bekal S., Fairbrother J.M., Harel J., Maynard C., Masson L., and Brousseau R. Occurrence of virulence and antimicrobial resistance genes in Escherichia coli from different aquatic ecosystems within the St. Clair River and Detroit River areas. Appl. Environ. Microbiol. 73 (2007) 477-484
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 477-484
-
-
Hamelin, K.1
Bruant, G.2
El Shaarawi, A.3
Hill, S.4
Edge, T.A.5
Bekal, S.6
Fairbrother, J.M.7
Harel, J.8
Maynard, C.9
Masson, L.10
Brousseau, R.11
-
29
-
-
33745131779
-
Development of goose- and duck-specific DNA markers to determine sources of Escherichia coli in waterways
-
Hamilton M.J., Yan T., and Sadowsky M.J. Development of goose- and duck-specific DNA markers to determine sources of Escherichia coli in waterways. Appl. Environ. Microbiol. 72 6 (2006) 4012-4019
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.6
, pp. 4012-4019
-
-
Hamilton, M.J.1
Yan, T.2
Sadowsky, M.J.3
-
30
-
-
34547398209
-
Assumptions and limitations of microbial source tracking methods
-
Santo-Domingo J., and Sadowsky M. (Eds), ASM Press, Washington, DC
-
Harwood V.J. Assumptions and limitations of microbial source tracking methods. In: Santo-Domingo J., and Sadowsky M. (Eds). Microbial Source Tracking (2007), ASM Press, Washington, DC
-
(2007)
Microbial Source Tracking
-
-
Harwood, V.J.1
-
31
-
-
12244309068
-
Methods to increase fidelity of repetitive extragenic palindromic PCR fingerprint-based bacterial source tracking efforts
-
Hassan W.M., Wang S.Y., and Ellender R.D. Methods to increase fidelity of repetitive extragenic palindromic PCR fingerprint-based bacterial source tracking efforts. Appl. Environ. Microbiol. 71 1 (2005) 512-518
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.1
, pp. 512-518
-
-
Hassan, W.M.1
Wang, S.Y.2
Ellender, R.D.3
-
32
-
-
33644853450
-
Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds
-
Ishii S., Ksoll W.B., Hicks R.E., and Sadowsky M.J. Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds. Appl. Environ. Microbiol. 72 1 (2006) 612-621
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.1
, pp. 612-621
-
-
Ishii, S.1
Ksoll, W.B.2
Hicks, R.E.3
Sadowsky, M.J.4
-
33
-
-
0036840136
-
Quantitative application of fecal sterols using gas chromatography-mass spectrometry to investigate fecal pollution in tropical waters: western Malaysia and Mekong Delta, Vietnam
-
Isobe K.O., Tarao M., Zakaria M.P., Chiem N.H., Minh le Y., and Takada H. Quantitative application of fecal sterols using gas chromatography-mass spectrometry to investigate fecal pollution in tropical waters: western Malaysia and Mekong Delta, Vietnam. Environ. Sci. Technol. 36 21 (2002) 4497-4507
-
(2002)
Environ. Sci. Technol.
, vol.36
, Issue.21
, pp. 4497-4507
-
-
Isobe, K.O.1
Tarao, M.2
Zakaria, M.P.3
Chiem, N.H.4
Minh le, Y.5
Takada, H.6
-
34
-
-
0037236059
-
Putative temporal variability of Escherichia coli ribotypes from yearling steers
-
Jenkins M.B., Hartel P.G., Olexa T.J., and Stuedemann J.A. Putative temporal variability of Escherichia coli ribotypes from yearling steers. J. Environ. Qual. 32 1 (2003) 305-309
-
(2003)
J. Environ. Qual.
, vol.32
, Issue.1
, pp. 305-309
-
-
Jenkins, M.B.1
Hartel, P.G.2
Olexa, T.J.3
Stuedemann, J.A.4
-
35
-
-
4143115645
-
Sample size, library composition, and genotypic diversity influence accuracy of determining sources of fecal pollution among natural populations of Escherichia coli from different animals
-
Johnson L.K., Brown M.B., Carruthers E.A., Ferguson J.A., Dombek P.E., and Sadowsky M.J. Sample size, library composition, and genotypic diversity influence accuracy of determining sources of fecal pollution among natural populations of Escherichia coli from different animals. Appl. Environ. Microbiol. 70 8 (2004) 4478-4485
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, Issue.8
, pp. 4478-4485
-
-
Johnson, L.K.1
Brown, M.B.2
Carruthers, E.A.3
Ferguson, J.A.4
Dombek, P.E.5
Sadowsky, M.J.6
-
36
-
-
1642561792
-
A biomarker for the identification of swine fecal pollution in water using the STII toxin gene from enterotoxigenic E. coli
-
Khatib L.A., Tsai Y.L., and Olson B.H. A biomarker for the identification of swine fecal pollution in water using the STII toxin gene from enterotoxigenic E. coli. Appl. Microbiol. Biotechnol. 63 2 (2003) 231-238
-
(2003)
Appl. Microbiol. Biotechnol.
, vol.63
, Issue.2
, pp. 231-238
-
-
Khatib, L.A.1
Tsai, Y.L.2
Olson, B.H.3
-
37
-
-
34547597968
-
-
Kildare, B.J., Leutenegger, C.M., McSwain, B.S., Bambic, D.G., Rajal, V.B., Wuertz, S., 2007. 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res., in press.
-
-
-
-
38
-
-
0031714984
-
Persistence of PCR-detectable Bacteroides distasonis from human feces in river water
-
Kreader C.A. Persistence of PCR-detectable Bacteroides distasonis from human feces in river water. Appl. Environ. Microbiol. 64 10 (1998) 4103-4105
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, Issue.10
, pp. 4103-4105
-
-
Kreader, C.A.1
-
39
-
-
0242583175
-
Targeted sampling protocol as prelude to bacterial source tracking with Enterococcus faecalis
-
Kuntz R.L., Hartel P.G., Godfrey D.G., McDonald J.L., Gates K.W., and Segars W.I. Targeted sampling protocol as prelude to bacterial source tracking with Enterococcus faecalis. J. Environ. Qual. 32 6 (2003) 2311-2318
-
(2003)
J. Environ. Qual.
, vol.32
, Issue.6
, pp. 2311-2318
-
-
Kuntz, R.L.1
Hartel, P.G.2
Godfrey, D.G.3
McDonald, J.L.4
Gates, K.W.5
Segars, W.I.6
-
40
-
-
33847730305
-
Assessment of fecal pollution sources in a small northern-plains watershed using PCR and phylogenetic analyses of Bacteroidetes 16S rRNA gene
-
Lamendella R., Santo Domingo J.W., Oerther D.B., Vogel J.R., and Stoeckel D.M. Assessment of fecal pollution sources in a small northern-plains watershed using PCR and phylogenetic analyses of Bacteroidetes 16S rRNA gene. FEMS Microbiol. Ecol. 59 3 (2007) 651-660
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, Issue.3
, pp. 651-660
-
-
Lamendella, R.1
Santo Domingo, J.W.2
Oerther, D.B.3
Vogel, J.R.4
Stoeckel, D.M.5
-
41
-
-
23744433384
-
Statistical analyses: possible reasons for unreliability of source tracking efforts
-
Lasalde C., Rodriguez R., and Toranzos G.A. Statistical analyses: possible reasons for unreliability of source tracking efforts. Appl. Environ. Microbiol. 71 8 (2005) 4690-4695
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.8
, pp. 4690-4695
-
-
Lasalde, C.1
Rodriguez, R.2
Toranzos, G.A.3
-
42
-
-
33745153077
-
Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
-
Layton A., McKay L., Williams D., Garrett V., Gentry R., and Sayler G. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl. Environ. Microbiol. 72 6 (2006) 4214-4224
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.6
, pp. 4214-4224
-
-
Layton, A.1
McKay, L.2
Williams, D.3
Garrett, V.4
Gentry, R.5
Sayler, G.6
-
43
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley R.E., Peterson D.A., and Gordon J.I. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124 4 (2006) 837-848
-
(2006)
Cell
, vol.124
, Issue.4
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
44
-
-
34547501670
-
-
Lu, J., Santo Domingo, J.W., Shanks, O.C., 2007. Identification of chicken-specific fecal microbial sequences using a metagenomic approach. Water Res., in press.
-
-
-
-
45
-
-
13544249833
-
Use of eukaryotic mitochondrial DNA to differentiate human, bovine, porcine and ovine sources in fecally contaminated surface water
-
Martellini A., Payment P., and Villemur R. Use of eukaryotic mitochondrial DNA to differentiate human, bovine, porcine and ovine sources in fecally contaminated surface water. Water Res. 39 4 (2005) 541-548
-
(2005)
Water Res.
, vol.39
, Issue.4
, pp. 541-548
-
-
Martellini, A.1
Payment, P.2
Villemur, R.3
-
46
-
-
29144436660
-
Waterborne pathogen detection by use of oligonucleotide-based microarrays
-
Maynard C., Berthiaume F., Lemarchand K., Harel J., Payment P., Bayardelle P., Masson L., and Brousseau R. Waterborne pathogen detection by use of oligonucleotide-based microarrays. Appl. Environ. Microbiol. 71 12 (2005) 8548-8557
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, Issue.12
, pp. 8548-8557
-
-
Maynard, C.1
Berthiaume, F.2
Lemarchand, K.3
Harel, J.4
Payment, P.5
Bayardelle, P.6
Masson, L.7
Brousseau, R.8
-
47
-
-
33646592585
-
Identifying sources of fecal contamination inexpensively with targeted sampling and bacterial source tracking
-
McDonald J.L., Hartel P.G., Gentit L.C., Belcher C.N., Gates K.W., Rodgers K., Fisher J.A., Smith K.A., and Payne K.A. Identifying sources of fecal contamination inexpensively with targeted sampling and bacterial source tracking. J. Environ. Qual. 35 3 (2006) 889-897
-
(2006)
J. Environ. Qual.
, vol.35
, Issue.3
, pp. 889-897
-
-
McDonald, J.L.1
Hartel, P.G.2
Gentit, L.C.3
Belcher, C.N.4
Gates, K.W.5
Rodgers, K.6
Fisher, J.A.7
Smith, K.A.8
Payne, K.A.9
-
48
-
-
33845542335
-
Detection of human-derived fecal pollution in environmental waters by use of a PCR-based human polyomavirus assay
-
McQuaig S.M., Scott T.M., Harwood V.J., Farrah S.R., and Lukasik J.O. Detection of human-derived fecal pollution in environmental waters by use of a PCR-based human polyomavirus assay. Appl. Environ. Microbiol. 72 (2006) 7567-7574
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7567-7574
-
-
McQuaig, S.M.1
Scott, T.M.2
Harwood, V.J.3
Farrah, S.R.4
Lukasik, J.O.5
-
49
-
-
4444356159
-
Source tracking fecal bacteria in water: a critical review of current methods
-
Meays C.L., Broersma K., Nordin R., and Majumder A. Source tracking fecal bacteria in water: a critical review of current methods. J. Environ. Manage. 73 (2004) 71-79
-
(2004)
J. Environ. Manage.
, vol.73
, pp. 71-79
-
-
Meays, C.L.1
Broersma, K.2
Nordin, R.3
Majumder, A.4
-
50
-
-
34247646131
-
Shellfish and microbial source tracking
-
Santo Domingo J., and Sadowsky M. (Eds), ASM Press, Washington, DC
-
Meschke J.S., and Boyle D.L. Shellfish and microbial source tracking. In: Santo Domingo J., and Sadowsky M. (Eds). Microbial Source Tracking (2007), ASM Press, Washington, DC
-
(2007)
Microbial Source Tracking
-
-
Meschke, J.S.1
Boyle, D.L.2
-
51
-
-
34547405474
-
-
NRDC (National Resources Defense Council), Natural Resources Defense Council, New York, NY
-
NRDC (National Resources Defense Council). Testing the Waters 2000: Fact Sheet (2000), Natural Resources Defense Council, New York, NY
-
(2000)
Testing the Waters 2000: Fact Sheet
-
-
-
53
-
-
33847312252
-
Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater
-
Okabe S., Okayama N., Savichtcheva O., and Ito T. Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater. Appl. Microbiol. Biotechnol. 74 (2007) 890-901
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.74
, pp. 890-901
-
-
Okabe, S.1
Okayama, N.2
Savichtcheva, O.3
Ito, T.4
-
54
-
-
23944465460
-
Tracing anthropogenic contamination in the Pearl River estuarine and marine environment of South China Sea using sterols and other organic molecular markers
-
Peng X., Zhang G., Mai B., Hu J., Li K., and Wang Z. Tracing anthropogenic contamination in the Pearl River estuarine and marine environment of South China Sea using sterols and other organic molecular markers. Mar. Pollut. Bull. 50 8 (2005) 856-865
-
(2005)
Mar. Pollut. Bull.
, vol.50
, Issue.8
, pp. 856-865
-
-
Peng, X.1
Zhang, G.2
Mai, B.3
Hu, J.4
Li, K.5
Wang, Z.6
-
55
-
-
33847715501
-
Validation of hollow fiber ultrafiltration and real time PCR using bacteriophage PP7 as surrogate for the quantification of viruses from water samples
-
Rajal V.B., McSwain B.S., Thompson D.E., Leutenegger C.M., Kildare B.J., and Wuertz S. Validation of hollow fiber ultrafiltration and real time PCR using bacteriophage PP7 as surrogate for the quantification of viruses from water samples. Water Res. 41 7 (2007) 1411-1422
-
(2007)
Water Res.
, vol.41
, Issue.7
, pp. 1411-1422
-
-
Rajal, V.B.1
McSwain, B.S.2
Thompson, D.E.3
Leutenegger, C.M.4
Kildare, B.J.5
Wuertz, S.6
-
56
-
-
35349027915
-
-
Rajal, V.B., McSwain, B.S., Thompson, D.E., Leutenegger, C.M., Wuertz, S., 2007b. Molecular quantitative analysis of human viruses in California stormwater. Water Res., in press.
-
-
-
-
57
-
-
33747329331
-
Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions
-
Reischer G.H., Kasper D.C., Steinborn R., Mach R.L., and Farnleitner A.H. Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions. Appl. Environ. Microbiol. 72 8 (2006) 5610-5614
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.8
, pp. 5610-5614
-
-
Reischer, G.H.1
Kasper, D.C.2
Steinborn, R.3
Mach, R.L.4
Farnleitner, A.H.5
-
58
-
-
33947640155
-
A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area
-
Reischer G.H., Kasper D.C., Steinborn R., Farnleitner A.H., and Mach R.L. A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area. Lett. Appl. Microbiol. 44 (2007) 351-356
-
(2007)
Lett. Appl. Microbiol.
, vol.44
, pp. 351-356
-
-
Reischer, G.H.1
Kasper, D.C.2
Steinborn, R.3
Farnleitner, A.H.4
Mach, R.L.5
-
59
-
-
54049090581
-
The future of microbial source tracking studies
-
Santo Domingo J., and Sadowsky M. (Eds), ASM Press, Washington, DC
-
Sadowsky M.J., Call D.C., and Santo Domingo J.W. The future of microbial source tracking studies. In: Santo Domingo J., and Sadowsky M. (Eds). Microbial Source Tracking (2007), ASM Press, Washington, DC
-
(2007)
Microbial Source Tracking
-
-
Sadowsky, M.J.1
Call, D.C.2
Santo Domingo, J.W.3
-
60
-
-
0017341656
-
Microbial ecology of gastrointestinal tract
-
Savage D.C. Microbial ecology of gastrointestinal tract. Annu. Rev. Microbiol. 31 (1977) 107-133
-
(1977)
Annu. Rev. Microbiol.
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
61
-
-
33745631476
-
Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives
-
Savichtcheva O., and Okabe S. Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives. Water Res. 40 13 (2006) 2463-2476
-
(2006)
Water Res.
, vol.40
, Issue.13
, pp. 2463-2476
-
-
Savichtcheva, O.1
Okabe, S.2
-
62
-
-
0036237074
-
Faecal contamination of source-separated human urine based on the content of faecal sterols
-
Schonning C., Leeming R., and Stenstrom T.A. Faecal contamination of source-separated human urine based on the content of faecal sterols. Water Res. 36 8 (2002) 1965-1972
-
(2002)
Water Res.
, vol.36
, Issue.8
, pp. 1965-1972
-
-
Schonning, C.1
Leeming, R.2
Stenstrom, T.A.3
-
63
-
-
11244270375
-
Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution
-
Scott T.M., Jenkins T.M., Lukasik J., and Rose J.B. Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution. Environ. Sci. Technol. 39 1 (2005) 283-287
-
(2005)
Environ. Sci. Technol.
, vol.39
, Issue.1
, pp. 283-287
-
-
Scott, T.M.1
Jenkins, T.M.2
Lukasik, J.3
Rose, J.B.4
-
64
-
-
0036946650
-
Microbial source tracking: current methodology and future directions
-
Scott T.M., Rose J.B., Jenkins T.M., Farrah S.R., and Lukasik J. Microbial source tracking: current methodology and future directions. Appl. Env. Microbiol. 68 12 (2002) 5796-5803
-
(2002)
Appl. Env. Microbiol.
, vol.68
, Issue.12
, pp. 5796-5803
-
-
Scott, T.M.1
Rose, J.B.2
Jenkins, T.M.3
Farrah, S.R.4
Lukasik, J.5
-
65
-
-
12744260019
-
Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human feacal pollution in freshwater
-
Seurinck S., Defoirdt T., Verstraete W., and Siciliano S.D. Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human feacal pollution in freshwater. Environ. Microbiol. 7 2 (2005) 249-259
-
(2005)
Environ. Microbiol.
, vol.7
, Issue.2
, pp. 249-259
-
-
Seurinck, S.1
Defoirdt, T.2
Verstraete, W.3
Siciliano, S.D.4
-
66
-
-
33745130390
-
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples
-
Shanks O.C., Santo Domingo J.W., Lamendella R., Kelty C.A., and Graham J.E. Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples. Appl. Environ. Microbiol. 72 6 (2006) 4054-4060
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.6
, pp. 4054-4060
-
-
Shanks, O.C.1
Santo Domingo, J.W.2
Lamendella, R.3
Kelty, C.A.4
Graham, J.E.5
-
67
-
-
34247634968
-
Identification of bacterial DNA markers for the detection of human fecal pollution in water
-
Shanks O.C., Santo Domingo J.W., Lu J., Kelty C.A., and Graham J.E. Identification of bacterial DNA markers for the detection of human fecal pollution in water. Appl. Environ. Microbiol. 73 (2007) 2416-2422
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 2416-2422
-
-
Shanks, O.C.1
Santo Domingo, J.W.2
Lu, J.3
Kelty, C.A.4
Graham, J.E.5
-
69
-
-
33746094667
-
Microsporidian species known to infect humans are present in aquatic birds: implications for transmission via water?
-
Slodkowicz-Kowalska A., Graczyk T.K., Tamang L., Jedrzejewski S., Nowosad A., Zduniak P., Solarczyk P., Girouard A.S., and Majewska A.C. Microsporidian species known to infect humans are present in aquatic birds: implications for transmission via water?. Appl. Environ. Microbiol. 72 7 (2006) 4540-4544
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.7
, pp. 4540-4544
-
-
Slodkowicz-Kowalska, A.1
Graczyk, T.K.2
Tamang, L.3
Jedrzejewski, S.4
Nowosad, A.5
Zduniak, P.6
Solarczyk, P.7
Girouard, A.S.8
Majewska, A.C.9
-
70
-
-
33644962971
-
Using DNA microarrays to identify library-independent markers for bacterial source tracking
-
Soule M., Kuhn E., Loge F., Gay J., and Call D.R. Using DNA microarrays to identify library-independent markers for bacterial source tracking. Appl. Environ. Microbiol. 272 (2006) 1843-1851
-
(2006)
Appl. Environ. Microbiol.
, vol.272
, pp. 1843-1851
-
-
Soule, M.1
Kuhn, E.2
Loge, F.3
Gay, J.4
Call, D.R.5
-
71
-
-
6344284400
-
Recommendations for microbial source tracking: lessons from a methods comparison study
-
Stewart J.R., Ellender R.D., Gooch J.A., Jiang S., Myoda S.P., and Weisberg S.B. Recommendations for microbial source tracking: lessons from a methods comparison study. J. Water Health 1 4 (2003) 225-231
-
(2003)
J. Water Health
, vol.1
, Issue.4
, pp. 225-231
-
-
Stewart, J.R.1
Ellender, R.D.2
Gooch, J.A.3
Jiang, S.4
Myoda, S.P.5
Weisberg, S.B.6
-
72
-
-
34547418350
-
Fecal pollution, public health, and microbial source tracking
-
Santo Domingo J., and Sadowsky M. (Eds), ASM Press, Washington, DC
-
Stewart J.R., Santo Domingo J.W., and Wade T.J. Fecal pollution, public health, and microbial source tracking. In: Santo Domingo J., and Sadowsky M. (Eds). Microbial Source Tracking (2007), ASM Press, Washington, DC
-
(2007)
Microbial Source Tracking
-
-
Stewart, J.R.1
Santo Domingo, J.W.2
Wade, T.J.3
-
73
-
-
34247622189
-
-
Stoeckel, D.M., Harwood, V.J., 2007. Performance, design and analysis in microbial source tracking studies. Appl. Environ. Microbiol. 73, in press.
-
-
-
-
74
-
-
20844456225
-
Comparison of seven protocols to identify fecal contamination sources using Escherichia coli
-
Stoeckel D.M., Mathes M.V., Hyer K.E., Hagedorn C., Kator H., Lukasik J., O'Brien T.L., Fenger T.W., Samadpour M., Strickler K.M., and Wiggins B.A. Comparison of seven protocols to identify fecal contamination sources using Escherichia coli. Environ. Sci. Technol. 38 22 (2004) 6109-6117
-
(2004)
Environ. Sci. Technol.
, vol.38
, Issue.22
, pp. 6109-6117
-
-
Stoeckel, D.M.1
Mathes, M.V.2
Hyer, K.E.3
Hagedorn, C.4
Kator, H.5
Lukasik, J.6
O'Brien, T.L.7
Fenger, T.W.8
Samadpour, M.9
Strickler, K.M.10
Wiggins, B.A.11
-
75
-
-
33746211254
-
Flow fingerprinting fecal pollution and suspended solids in stormwater runoff from an urban coastal watershed
-
Surbeck C.Q., Jiang S.C., Ahn J.H., and Grant S.B. Flow fingerprinting fecal pollution and suspended solids in stormwater runoff from an urban coastal watershed. Environ. Sci. Technol. 40 14 (2006) 4435-4441
-
(2006)
Environ. Sci. Technol.
, vol.40
, Issue.14
, pp. 4435-4441
-
-
Surbeck, C.Q.1
Jiang, S.C.2
Ahn, J.H.3
Grant, S.B.4
-
76
-
-
33745455754
-
Detection of the nifH gene of Methanobrevibacter smithii: a potential tool to identify sewage pollution in recreational waters
-
Ufnar J.A., Wang S.Y., Christiansen J.M., Yampara-Iquise H., Carson C.A., and Ellender R.D. Detection of the nifH gene of Methanobrevibacter smithii: a potential tool to identify sewage pollution in recreational waters. J. Appl. Microbiol. 101 1 (2006) 44-52
-
(2006)
J. Appl. Microbiol.
, vol.101
, Issue.1
, pp. 44-52
-
-
Ufnar, J.A.1
Wang, S.Y.2
Christiansen, J.M.3
Yampara-Iquise, H.4
Carson, C.A.5
Ellender, R.D.6
-
77
-
-
34547466384
-
-
USEPA (United States Environmental Protection Agency), 2001. Protocol for Developing Pathogen TMDL's: First Edition. EPA, Office of Water Report no. 841-R-00-002.
-
-
-
-
78
-
-
0347330774
-
-
USEPA (United States Environmental Protection Agency), USEPA Office of Water, Washington, DC
-
USEPA (United States Environmental Protection Agency). The 2000 National Water Quality Inventory, EPA-841-R-02-001 (2002), USEPA Office of Water, Washington, DC
-
(2002)
The 2000 National Water Quality Inventory, EPA-841-R-02-001
-
-
-
79
-
-
33646592369
-
-
USEPA (United States Environmental Protection Agency), USEPA Office of Research and Development, Washington, DC
-
USEPA (United States Environmental Protection Agency). Microbial Source Tracking Guide Document, EPA-600/R-05-064 (2005), USEPA Office of Research and Development, Washington, DC
-
(2005)
Microbial Source Tracking Guide Document, EPA-600/R-05-064
-
-
-
80
-
-
30344450088
-
Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness
-
Wade T.J., Calderon R.L., Sams E., Beach M., Brenner K.P., Williams A.H., and Dufour A.P. Rapidly measured indicators of recreational water quality are predictive of swimming-associated gastrointestinal illness. Environ. Health Perspect. 114 1 (2006) 24-28
-
(2006)
Environ. Health Perspect.
, vol.114
, Issue.1
, pp. 24-28
-
-
Wade, T.J.1
Calderon, R.L.2
Sams, E.3
Beach, M.4
Brenner, K.P.5
Williams, A.H.6
Dufour, A.P.7
-
81
-
-
33746080907
-
Persistence and growth of fecal Bacteroidales assessed by bromodeoxyuridine immunocapture
-
Walters S.P., and Field K.G. Persistence and growth of fecal Bacteroidales assessed by bromodeoxyuridine immunocapture. Appl. Environ. Microbiol. 72 7 (2006) 4532-4539
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.7
, pp. 4532-4539
-
-
Walters, S.P.1
Field, K.G.2
-
82
-
-
0032771988
-
Use of antibiotic resistance analysis to identify nonpoint sources of fecal pollution
-
Wiggins B.A., Andrews R.W., Conway R.A., Corr C.L., Dobratz E.J., Dougherty D.P., Eppard J.R., Knupp S.R., Limjoco M.C., Mettenburg J.M., Rinehardt J.M., Sonsino J., Torrijos R.L., and Zimmerman M.E. Use of antibiotic resistance analysis to identify nonpoint sources of fecal pollution. Appl. Environ. Microbiol. 65 8 (1999) 3483-3486
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, Issue.8
, pp. 3483-3486
-
-
Wiggins, B.A.1
Andrews, R.W.2
Conway, R.A.3
Corr, C.L.4
Dobratz, E.J.5
Dougherty, D.P.6
Eppard, J.R.7
Knupp, S.R.8
Limjoco, M.C.9
Mettenburg, J.M.10
Rinehardt, J.M.11
Sonsino, J.12
Torrijos, R.L.13
Zimmerman, M.E.14
-
83
-
-
34547485632
-
Statistical issues in microbial source tracking
-
Santo Domingo J., and Sadowsky M. (Eds), ASM Press, Washington, DC
-
Wilbur J.D., and Whitlock J.E. Statistical issues in microbial source tracking. In: Santo Domingo J., and Sadowsky M. (Eds). Microbial Source Tracking (2007), ASM Press, Washington, DC
-
(2007)
Microbial Source Tracking
-
-
Wilbur, J.D.1
Whitlock, J.E.2
-
84
-
-
0034466698
-
Identification of species and sources of Cryptosporidium oocysts in storm waters with a small-subunit rRNA-based diagnostic and genotyping tool
-
Xiao L., Alderisio K., Limor J., Royer M., and Lal A.A. Identification of species and sources of Cryptosporidium oocysts in storm waters with a small-subunit rRNA-based diagnostic and genotyping tool. Appl. Environ. Microbiol. 66 12 (2000) 5492-5498
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, Issue.12
, pp. 5492-5498
-
-
Xiao, L.1
Alderisio, K.2
Limor, J.3
Royer, M.4
Lal, A.A.5
-
85
-
-
33745118646
-
Whole-genome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification using phi29 polymerase
-
Yokouchi H., Fukuoka Y., Mukoyama D., Calugay R., Takeyama H., and Matsunaga T. Whole-genome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification using phi29 polymerase. Environ. Microbiol. 8 7 (2006) 1155-1163
-
(2006)
Environ. Microbiol.
, vol.8
, Issue.7
, pp. 1155-1163
-
-
Yokouchi, H.1
Fukuoka, Y.2
Mukoyama, D.3
Calugay, R.4
Takeyama, H.5
Matsunaga, T.6
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