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Volumn 9, Issue 12, 2014, Pages

CRISPR-Cas9-based knockout of the prion protein and its effect on the Proteome

Author keywords

[No Author keywords available]

Indexed keywords

PRION PROTEIN; PROTEOME; PRION;

EID: 84916620478     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0114594     Document Type: Article
Times cited : (50)

References (47)
  • 2
    • 0022476747 scopus 로고
    • Scrapie and cellular PrP isoforms are encoded by the same chromosomal gene
    • Basler K, Oesch B, Scott M, Westaway D, Walchli M, et al. (1986) Scrapie and cellular PrP isoforms are encoded by the same chromosomal gene. Cell 46: 417-428.
    • (1986) Cell , vol.46 , pp. 417-428
    • Basler, K.1    Oesch, B.2    Scott, M.3    Westaway, D.4    Walchli, M.5
  • 4
    • 61349201380 scopus 로고    scopus 로고
    • Cellular prion protein mediates impairment of synaptic plasticity by amyloid-beta oligomers
    • Lauren J, Gimbel DA, Nygaard HB, Gilbert JW, Strittmatter SM (2009) Cellular prion protein mediates impairment of synaptic plasticity by amyloid-beta oligomers. Nature 457: 1128-1132.
    • (2009) Nature , vol.457 , pp. 1128-1132
    • Lauren, J.1    Gimbel, D.A.2    Nygaard, H.B.3    Gilbert, J.W.4    Strittmatter, S.M.5
  • 5
    • 84862889276 scopus 로고    scopus 로고
    • Prion propagation, toxicity and degradation
    • Aguzzi A, Falsig J (2012) Prion propagation, toxicity and degradation. Nat Neurosci 15: 936-939.
    • (2012) Nat Neurosci , vol.15 , pp. 936-939
    • Aguzzi, A.1    Falsig, J.2
  • 6
    • 2942720836 scopus 로고    scopus 로고
    • The role of PrP in health and disease
    • Flechsig E, Weissmann C (2004) The role of PrP in health and disease. Curr Mol Med 4: 337-353.
    • (2004) Curr Mol Med , vol.4 , pp. 337-353
    • Flechsig, E.1    Weissmann, C.2
  • 7
    • 0023928927 scopus 로고
    • Scrapie-infected murine neuroblastoma cells produce protease-resistant prion proteins
    • Butler DA, Scott MR, Bockman JM, Borchelt DR, Taraboulos A, et al. (1988) Scrapie-infected murine neuroblastoma cells produce protease-resistant prion proteins. J Virol 62: 1558-1564.
    • (1988) J Virol , vol.62 , pp. 1558-1564
    • Butler, D.A.1    Scott, M.R.2    Bockman, J.M.3    Borchelt, D.R.4    Taraboulos, A.5
  • 8
    • 0023091197 scopus 로고
    • Characterization of scrapie infection in mouse neuroblastoma cells
    • Race RE, Fadness LH, Chesebro B (1987) Characterization of scrapie infection in mouse neuroblastoma cells. J Gen Virol 68: 1391-1399.
    • (1987) J Gen Virol , vol.68 , pp. 1391-1399
    • Race, R.E.1    Fadness, L.H.2    Chesebro, B.3
  • 9
    • 84888219286 scopus 로고    scopus 로고
    • Infectious Prions Accumulate to High Levels in Non Proliferative C2C12 Myotubes
    • Herbst A, Banser P, Velasquez CD, Mays CE, Sim VL, et al. (2013) Infectious Prions Accumulate to High Levels in Non Proliferative C2C12 Myotubes. PLoS Pathog 9: e1003755.
    • (2013) PLoS Pathog , vol.9 , pp. e1003755
    • Herbst, A.1    Banser, P.2    Velasquez, C.D.3    Mays, C.E.4    Sim, V.L.5
  • 10
    • 70349757699 scopus 로고    scopus 로고
    • PrPs: Proteins with a purpose: Lessons from the zebrafish
    • Malaga-Trillo E, Sempou E (2009) PrPs: Proteins with a purpose: Lessons from the zebrafish. Prion 3: 129-133.
    • (2009) Prion , vol.3 , pp. 129-133
    • Malaga-Trillo, E.1    Sempou, E.2
  • 12
    • 84879264708 scopus 로고    scopus 로고
    • ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
    • rd (2013) ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotech 31: 397-405.
    • (2013) Trends Biotech , vol.31 , pp. 397-405
    • Gaj, T.1    Gersbach, C.A.2    Barbas, C.F.3
  • 13
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath P, Barrangou R (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327: 167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 14
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft B, Sternberg SH, Doudna JA (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482: 331-338.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 15
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
    • Bhaya D, Davison M, Barrangou R (2011) CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 45: 273-297.
    • (2011) Annu Rev Genet , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 16
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu PD, Lander ES, Zhang F (2014) Development and Applications of CRISPR-Cas9 for Genome Engineering. Cell 157: 1262-1278.
    • (2014) Cell , vol.157 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 17
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • Mali P, Esvelt KM, Church GM (2013) Cas9 as a versatile tool for engineering biology. Nat Meth 10: 957-963.
    • (2013) Nat Meth , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 18
    • 84883305437 scopus 로고    scopus 로고
    • Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus
    • Ebina H, Misawa N, Kanemura Y, Koyanagi Y (2013) Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus. Sci Rep 3: 2510.
    • (2013) Sci Rep , vol.3 , pp. 2510
    • Ebina, H.1    Misawa, N.2    Kanemura, Y.3    Koyanagi, Y.4
  • 19
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/ Cas systems
    • Cong L, Ran FA, Cox D, Lin S, Barretto R, et al. (2013) Multiplex genome engineering using CRISPR/ Cas systems. Science 339: 819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5
  • 20
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali P, Yang L, Esvelt KM, Aach J, Guell M, et al. (2013) RNA-guided human genome engineering via Cas9. Science 339: 823-826.
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1    Yang, L.2    Esvelt, K.M.3    Aach, J.4    Guell, M.5
  • 21
    • 84894081986 scopus 로고    scopus 로고
    • Generation of gene-modified cynomolgus monkey via Cas9/RNA-mediated gene targeting in one-cell embryos
    • Niu Y, Shen B, Cui Y, Chen Y, Wang J, et al. (2014) Generation of gene-modified cynomolgus monkey via Cas9/RNA-mediated gene targeting in one-cell embryos. Cell 156: 836-843.
    • (2014) Cell , vol.156 , pp. 836-843
    • Niu, Y.1    Shen, B.2    Cui, Y.3    Chen, Y.4    Wang, J.5
  • 22
    • 84902187031 scopus 로고    scopus 로고
    • Translating the genomic revolution - targeted genome editing in primates
    • Cathomen T, Ehl S (2014) Translating the genomic revolution - targeted genome editing in primates. N Engl J Med 370: 2342-2345.
    • (2014) N Engl J Med , vol.370 , pp. 2342-2345
    • Cathomen, T.1    Ehl, S.2
  • 23
    • 3142768860 scopus 로고    scopus 로고
    • Conservative homologous recombination preferentially repairs DNA double-strand breaks in the S phase of the cell cycle in human cells
    • Saleh-Gohari N, Helleday T (2004) Conservative homologous recombination preferentially repairs DNA double-strand breaks in the S phase of the cell cycle in human cells. Nucleic Acids Res 32: 3683-3688.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3683-3688
    • Saleh-Gohari, N.1    Helleday, T.2
  • 24
    • 84865070369 scopus 로고    scopus 로고
    • A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, et al. (2012) A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity. Science 337: 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5
  • 26
    • 84888617099 scopus 로고    scopus 로고
    • Organizing principles of mammalian nonsense-mediated mRNA decay
    • Popp MW, Maquat LE (2013) Organizing principles of mammalian nonsense-mediated mRNA decay. Annu Rev Genet 47: 139-165.
    • (2013) Annu Rev Genet , vol.47 , pp. 139-165
    • Popp, M.W.1    Maquat, L.E.2
  • 27
    • 33746224027 scopus 로고    scopus 로고
    • Applying nonsense-mediated mRNA decay research to the clinic: Progress and challenges
    • Kuzmiak HA, Maquat LE (2006) Applying nonsense-mediated mRNA decay research to the clinic: progress and challenges. Trends Mol Med 12: 306-316.
    • (2006) Trends Mol Med , vol.12 , pp. 306-316
    • Kuzmiak, H.A.1    Maquat, L.E.2
  • 28
    • 35748972060 scopus 로고    scopus 로고
    • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    • Kall L, Canterbury JD, Weston J, Noble WS, MacCoss MJ (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat Meth 4: 923-925.
    • (2007) Nat Meth , vol.4 , pp. 923-925
    • Kall, L.1    Canterbury, J.D.2    Weston, J.3    Noble, W.S.4    MacCoss, M.J.5
  • 29
    • 84897954175 scopus 로고    scopus 로고
    • Efficient genome modification by CRISPRCas9 nickase with minimal off-target effects
    • Shen B, Zhang W, Zhang J, Zhou J, Wang J, et al. (2014) Efficient genome modification by CRISPRCas9 nickase with minimal off-target effects. Nat Meth 11: 399-402.
    • (2014) Nat Meth , vol.11 , pp. 399-402
    • Shen, B.1    Zhang, W.2    Zhang, J.3    Zhou, J.4    Wang, J.5
  • 30
    • 84891710947 scopus 로고    scopus 로고
    • Analysis of off-target effects of CRISPR/Casderived RNA-guided endonucleases and nickases
    • Cho SW, Kim S, Kim Y, Kweon J, Kim HS, et al. (2014) Analysis of off-target effects of CRISPR/Casderived RNA-guided endonucleases and nickases. Genome Res 24: 132-141.
    • (2014) Genome Res , vol.24 , pp. 132-141
    • Cho, S.W.1    Kim, S.2    Kim, Y.3    Kweon, J.4    Kim, H.S.5
  • 31
    • 84884288934 scopus 로고    scopus 로고
    • Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
    • Ran FA, Hsu PD, Lin CY, Gootenberg JS, Konermann S, et al. (2013) Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154: 1380-1389.
    • (2013) Cell , vol.154 , pp. 1380-1389
    • Ran, F.A.1    Hsu, P.D.2    Lin, C.Y.3    Gootenberg, J.S.4    Konermann, S.5
  • 34
    • 17944363361 scopus 로고    scopus 로고
    • The 37-kDa/67-kDa laminin receptor acts as the cell-surface receptor for the cellular prion protein
    • Gauczynski S, Peyrin JM, Haik S, Leucht C, Hundt C, et al. (2001) The 37-kDa/67-kDa laminin receptor acts as the cell-surface receptor for the cellular prion protein. EMBO J 20: 5863-5875.
    • (2001) EMBO J , vol.20 , pp. 5863-5875
    • Gauczynski, S.1    Peyrin, J.M.2    Haik, S.3    Leucht, C.4    Hundt, C.5
  • 35
    • 0033817026 scopus 로고    scopus 로고
    • Altered intracellular calcium homeostasis in cerebellar granule cells of prion protein-deficient mice
    • Herms JW, Korte S, Gall S, Schneider I, Dunker S, et al. (2000) Altered intracellular calcium homeostasis in cerebellar granule cells of prion protein-deficient mice. J Neurochem 75: 1487-1492.
    • (2000) J Neurochem , vol.75 , pp. 1487-1492
    • Herms, J.W.1    Korte, S.2    Gall, S.3    Schneider, I.4    Dunker, S.5
  • 36
    • 59149107337 scopus 로고    scopus 로고
    • Biosynthesis of prion protein nucleocytoplasmic isoforms by alternative initiation of translation
    • Juanes ME, Elvira G, Garcia-Grande A, Calero M, Gasset M (2009) Biosynthesis of prion protein nucleocytoplasmic isoforms by alternative initiation of translation. J Biol Chem 284: 2787-2794.
    • (2009) J Biol Chem , vol.284 , pp. 2787-2794
    • Juanes, M.E.1    Elvira, G.2    Garcia-Grande, A.3    Calero, M.4    Gasset, M.5
  • 38
    • 1142285202 scopus 로고    scopus 로고
    • Susceptibility of common fibroblast cell lines to transmissible spongiform encephalopathy agents
    • Vorberg I, Raines A, Story B, Priola SA (2004) Susceptibility of common fibroblast cell lines to transmissible spongiform encephalopathy agents. J Infect Dis 189: 431-439.
    • (2004) J Infect Dis , vol.189 , pp. 431-439
    • Vorberg, I.1    Raines, A.2    Story, B.3    Priola, S.A.4
  • 39
    • 0030931519 scopus 로고    scopus 로고
    • Evidence for protein X binding to a discontinuous epitope on the cellular prion protein during scrapie prion propagation
    • Kaneko K, Zulianello L, Scott M, Cooper CM, Wallace AC, et al. (1997) Evidence for protein X binding to a discontinuous epitope on the cellular prion protein during scrapie prion propagation. Proc Natl Acad Sci U S A 94: 10069-10074.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 10069-10074
    • Kaneko, K.1    Zulianello, L.2    Scott, M.3    Cooper, C.M.4    Wallace, A.C.5
  • 40
    • 85046915470 scopus 로고    scopus 로고
    • Mouse neuronal cells expressing exogenous bovine PRNP and simultaneous downregulation of endogenous mouse PRNP using siRNAs
    • Kang SG, Roh YM, Kang ML, Kim YS, Yoo HS (2010) Mouse neuronal cells expressing exogenous bovine PRNP and simultaneous downregulation of endogenous mouse PRNP using siRNAs. Prion 4: 32-37.
    • (2010) Prion , vol.4 , pp. 32-37
    • Kang, S.G.1    Roh, Y.M.2    Kang, M.L.3    Kim, Y.S.4    Yoo, H.S.5
  • 42
    • 77955427581 scopus 로고    scopus 로고
    • Cellular prion protein overexpression disturbs cellular homeostasis in SH-SY5Y neuroblastoma cells but does not alter p53 expression: A proteomic study
    • Weiss E, Ramljak S, Asif AR, Ciesielczyk B, Schmitz M, et al. (2010) Cellular prion protein overexpression disturbs cellular homeostasis in SH-SY5Y neuroblastoma cells but does not alter p53 expression: a proteomic study. Neuroscience 169: 1640-1650.
    • (2010) Neuroscience , vol.169 , pp. 1640-1650
    • Weiss, E.1    Ramljak, S.2    Asif, A.R.3    Ciesielczyk, B.4    Schmitz, M.5
  • 43
    • 84856641537 scopus 로고    scopus 로고
    • Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons
    • Stella R, Cifani P, Peggion C, Hansson K, Lazzari C, et al. (2012) Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons. J Prot Res 11: 523-536.
    • (2012) J Prot Res , vol.11 , pp. 523-536
    • Stella, R.1    Cifani, P.2    Peggion, C.3    Hansson, K.4    Lazzari, C.5
  • 44
    • 84903943282 scopus 로고    scopus 로고
    • Whole-Genome Sequencing Analysis Reveals High Specificity of CRISPR/Cas9 and TALEN-Based Genome Editing in Human iPSCs
    • Smith C, Gore A, Yan W, Abalde-Atristain L, Li Z, et al. (2014) Whole-Genome Sequencing Analysis Reveals High Specificity of CRISPR/Cas9 and TALEN-Based Genome Editing in Human iPSCs. Cell Stem Cell 15: 12-13.
    • (2014) Cell Stem Cell , vol.15 , pp. 12-13
    • Smith, C.1    Gore, A.2    Yan, W.3    Abalde-Atristain, L.4    Li, Z.5
  • 45
    • 84904010334 scopus 로고    scopus 로고
    • Low Incidence of Off-Target Mutations in Individual CRISPR-Cas9 and TALEN Targeted Human Stem Cell Clones Detected by Whole-Genome Sequencing
    • Veres A, Gosis BS, Ding Q, Collins R, Ragavendran A, et al. (2014) Low Incidence of Off-Target Mutations in Individual CRISPR-Cas9 and TALEN Targeted Human Stem Cell Clones Detected by Whole-Genome Sequencing. Cell Stem Cell 15: 27-30.
    • (2014) Cell Stem Cell , vol.15 , pp. 27-30
    • Veres, A.1    Gosis, B.S.2    Ding, Q.3    Collins, R.4    Ragavendran, A.5
  • 46
    • 84891796097 scopus 로고    scopus 로고
    • ProteomeXchange provides globally coordinated proteomics data submission and dissemination
    • Vizcaino JA, Deutsch EW, Wang R, Csordas A, Reisinger F, et al. (2014) ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat Biotechnol 32: 223-226.
    • (2014) Nat Biotechnol , vol.32 , pp. 223-226
    • Vizcaino, J.A.1    Deutsch, E.W.2    Wang, R.3    Csordas, A.4    Reisinger, F.5
  • 47
    • 84874762979 scopus 로고    scopus 로고
    • The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013
    • Vizcaino JA, Cote RG, Csordas A, Dianes JA, Fabregat A, et al. (2013) The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res 41: D1063-1069.
    • (2013) Nucleic Acids Res , vol.41 , pp. D1063-D1069
    • Vizcaino, J.A.1    Cote, R.G.2    Csordas, A.3    Dianes, J.A.4    Fabregat, A.5


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