메뉴 건너뛰기




Volumn 397, Issue 1, 2015, Pages 18-30

CbGRiTS: Cerebellar gene regulation in time and space

Author keywords

Cerebellum; Development; Granule cell; Mouse; Transcriptome

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; BRAIN DEVELOPMENT; C57BL 6 MOUSE; CEREBELLAR GENE REGULATION IN TIME AND SPACE; COMPARATIVE DYNAMICAL SYSTEM MODELING; CONTROLLED STUDY; DATA BASE; DBA 2 MOUSE; DIFFERENTIAL EQUATION MODELING; EMBRYO; EMBRYO DEVELOPMENT; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; GENETIC REGULATION; MALE; MICROARRAY ANALYSIS; MOUSE; MUTANT MOUSE STRAIN; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACLIQUEA NALYSIS; PERINATAL PERIOD; RECOMBINANT INBRED STRAIN; ALGORITHM; ANIMAL; BIOLOGY; C57BL MOUSE; CEREBELLUM; CLUSTER ANALYSIS; COMPUTER PROGRAM; DBA MOUSE; DNA MICROARRAY; EMBRYOLOGY; GENE EXPRESSION REGULATION; GENETIC DATABASE; PHYSIOLOGY; SPECIES DIFFERENCE; TIME;

EID: 84915829364     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2014.09.032     Document Type: Article
Times cited : (20)

References (60)
  • 1
    • 84914639435 scopus 로고
    • Estimation of nuclear population from microtome sections
    • Abercrombie Estimation of nuclear population from microtome sections. Anat. Rec. 1946, 94:239-247.
    • (1946) Anat. Rec. , vol.94 , pp. 239-247
  • 2
    • 45449095883 scopus 로고    scopus 로고
    • The role of the cerebellum in schizophrenia
    • Andreasen N.C., Pierson R. The role of the cerebellum in schizophrenia. Biol. Psychiatry 2008, 64:81-88.
    • (2008) Biol. Psychiatry , vol.64 , pp. 81-88
    • Andreasen, N.C.1    Pierson, R.2
  • 3
    • 8844277626 scopus 로고    scopus 로고
    • Analyzing time series gene expression data
    • Bar-Joseph Z. Analyzing time series gene expression data. Bioinformatics 2004, 20:2493-2503.
    • (2004) Bioinformatics , vol.20 , pp. 2493-2503
    • Bar-Joseph, Z.1
  • 6
    • 79955126771 scopus 로고    scopus 로고
    • Multiple developmental programs are altered by loss of Zic1 and Zic4 to cause Dandy-Walker malformation cerebellar pathogenesis
    • Blank M.C., Grinberg I., Aryee E., Laliberte C., Chizhikov V.V., Henkelman R.M., Millen K.J. Multiple developmental programs are altered by loss of Zic1 and Zic4 to cause Dandy-Walker malformation cerebellar pathogenesis. Development 2011, 138:1207-1216.
    • (2011) Development , vol.138 , pp. 1207-1216
    • Blank, M.C.1    Grinberg, I.2    Aryee, E.3    Laliberte, C.4    Chizhikov, V.V.5    Henkelman, R.M.6    Millen, K.J.7
  • 7
    • 77149134669 scopus 로고    scopus 로고
    • Comparative analysis of thresholding approaches for microarray-derived gene co-expression matrices
    • Borate B.R., Chesler E.J., Langston M.A., Saxton A.M., Voy B.H. Comparative analysis of thresholding approaches for microarray-derived gene co-expression matrices. BMC Research Notes 2009, 2.
    • (2009) BMC Research Notes , pp. 2
    • Borate, B.R.1    Chesler, E.J.2    Langston, M.A.3    Saxton, A.M.4    Voy, B.H.5
  • 8
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem R.B., Yvert G., Clinton R., Kruglyak L. Genetic dissection of transcriptional regulation in budding yeast. Science 2002, 296:752-755.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 10
    • 84860661767 scopus 로고    scopus 로고
    • The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging
    • Cajigas I.J., Tushev G., Will T.J., tom Dieck S., Fuerst N., Schuman E.M. The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging. Neuron 2012, 74:453-466.
    • (2012) Neuron , vol.74 , pp. 453-466
    • Cajigas, I.J.1    Tushev, G.2    Will, T.J.3    tom Dieck, S.4    Fuerst, N.5    Schuman, E.M.6
  • 11
    • 50949128524 scopus 로고    scopus 로고
    • Combinatorial genetic regulatory network analysis tools for high throughput transcriptomic data
    • Springer, New York, E. Eskin (Ed.)
    • Chesler E.J., Langston M.A. Combinatorial genetic regulatory network analysis tools for high throughput transcriptomic data. Systems Biology and Regulatory Genomics 2006, 150-165. Springer, New York. E. Eskin (Ed.).
    • (2006) Systems Biology and Regulatory Genomics , pp. 150-165
    • Chesler, E.J.1    Langston, M.A.2
  • 14
    • 32444446240 scopus 로고    scopus 로고
    • Gene regulatory networks and the evolution of animal body plans
    • Davidson E.H., Erwin D.H. Gene regulatory networks and the evolution of animal body plans. Science 2006, 311:796-800.
    • (2006) Science , vol.311 , pp. 796-800
    • Davidson, E.H.1    Erwin, D.H.2
  • 16
    • 79955795073 scopus 로고    scopus 로고
    • Graph algorithms for integrated biological analysis, with applications to type 1 diabetes data
    • World Scientific, London, W.A. Chaovalitwongse (Ed.)
    • Eblen J.D., Gerling I.C., Saxton A.M., Wu J., Snoddy J.R., Langston M.A. Graph algorithms for integrated biological analysis, with applications to type 1 diabetes data. Clustering Challenges in Biological Networks 2009, 207-222. World Scientific, London. W.A. Chaovalitwongse (Ed.).
    • (2009) Clustering Challenges in Biological Networks , pp. 207-222
    • Eblen, J.D.1    Gerling, I.C.2    Saxton, A.M.3    Wu, J.4    Snoddy, J.R.5    Langston, M.A.6
  • 17
    • 33644998123 scopus 로고    scopus 로고
    • Development of the deep cerebellar nuclei: transcription factors and cell migration from the rhombic lip
    • Fink A.J., Englund C., Daza R.A., Pham D., Lau C., Nivison M., Kowalczyk T., Hevner R.F. Development of the deep cerebellar nuclei: transcription factors and cell migration from the rhombic lip. J. Neurosci. 2006, 26:3066-3076.
    • (2006) J. Neurosci. , vol.26 , pp. 3066-3076
    • Fink, A.J.1    Englund, C.2    Daza, R.A.3    Pham, D.4    Lau, C.5    Nivison, M.6    Kowalczyk, T.7    Hevner, R.F.8
  • 18
    • 84875380606 scopus 로고    scopus 로고
    • DiffCorr: an R package to analyze and visualize differential correlations in biological networks
    • Fukushima A. DiffCorr: an R package to analyze and visualize differential correlations in biological networks. Gene 2013, 518:209-214.
    • (2013) Gene , vol.518 , pp. 209-214
    • Fukushima, A.1
  • 21
    • 0347362910 scopus 로고    scopus 로고
    • RORalpha coordinates reciprocal signaling in cerebellar development through sonic hedgehog and calcium-dependent pathways
    • Gold D.A., Baek S.H., Schork N.J., Rose D.W., Larsen D.D., Sachs B.D., Rosenfeld M.G., Hamilton B.A. RORalpha coordinates reciprocal signaling in cerebellar development through sonic hedgehog and calcium-dependent pathways. Neuron 2003, 40:1119-1131.
    • (2003) Neuron , vol.40 , pp. 1119-1131
    • Gold, D.A.1    Baek, S.H.2    Schork, N.J.3    Rose, D.W.4    Larsen, D.D.5    Sachs, B.D.6    Rosenfeld, M.G.7    Hamilton, B.A.8
  • 22
    • 0031928291 scopus 로고    scopus 로고
    • The cells and molecules that make a cerebellum
    • Goldowitz D., Hamre K. The cells and molecules that make a cerebellum. Trends Neurosci. 1998, 21:375-382.
    • (1998) Trends Neurosci. , vol.21 , pp. 375-382
    • Goldowitz, D.1    Hamre, K.2
  • 26
    • 0031053044 scopus 로고    scopus 로고
    • Genes involved in cerebellar cell specification and differentiation
    • Hatten M.E., Alder J., Zimmerman K., Heintz N. Genes involved in cerebellar cell specification and differentiation. Curr. Opin Neurobiol. 1997, 7:40-47.
    • (1997) Curr. Opin Neurobiol. , vol.7 , pp. 40-47
    • Hatten, M.E.1    Alder, J.2    Zimmerman, K.3    Heintz, N.4
  • 27
    • 11144357454 scopus 로고    scopus 로고
    • Gene expression nervous system atlas (GENSAT)
    • Heintz N. Gene expression nervous system atlas (GENSAT). Nat. Neurosci. 2004, 7:483.
    • (2004) Nat. Neurosci. , vol.7 , pp. 483
    • Heintz, N.1
  • 28
    • 33646796006 scopus 로고    scopus 로고
    • Transcription factors in glutamatergic neurogenesis: conserved programs in neocortex, cerebellum, and adult hippocampus
    • Hevner R.F., Hodge R.D., Daza R.A., Englund C. Transcription factors in glutamatergic neurogenesis: conserved programs in neocortex, cerebellum, and adult hippocampus. Neurosci. Res. 2006, 55:223-233.
    • (2006) Neurosci. Res. , vol.55 , pp. 223-233
    • Hevner, R.F.1    Hodge, R.D.2    Daza, R.A.3    Englund, C.4
  • 29
    • 85013961182 scopus 로고    scopus 로고
    • Differential Equations, Dynamical Systems, and an Introduction to Chaos
    • Academic Press.
    • Hirsch M.W., Smale S., Devaney R.L. (2013) Differential Equations, Dynamical Systems, and an Introduction to Chaos. Academic Press.
    • (2013)
    • Hirsch, M.W.1    Smale, S.2    Devaney, R.L.3
  • 30
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang D.W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 31
    • 33646001722 scopus 로고    scopus 로고
    • The fragile X-cerebellum connection
    • Huber K.M. The fragile X-cerebellum connection. Trends Neurosci. 2006, 29:183-185.
    • (2006) Trends Neurosci. , vol.29 , pp. 183-185
    • Huber, K.M.1
  • 32
    • 0035400051 scopus 로고    scopus 로고
    • Genetical genomics: the added value from segregation
    • Jansen R.C., Nap J.P. Genetical genomics: the added value from segregation. Trends Genet. 2001, 17:388-391.
    • (2001) Trends Genet. , vol.17 , pp. 388-391
    • Jansen, R.C.1    Nap, J.P.2
  • 35
    • 34547667386 scopus 로고    scopus 로고
    • Signal processing and the design of microarray time-series experiments
    • Klevecz R.R., Li C.M., Bolen J.L. Signal processing and the design of microarray time-series experiments. Methods Mol. Biol. 2007, 377:75-94.
    • (2007) Methods Mol. Biol. , vol.377 , pp. 75-94
    • Klevecz, R.R.1    Li, C.M.2    Bolen, J.L.3
  • 38
    • 38949164506 scopus 로고    scopus 로고
    • Genes and (common) pathways underlying drug addiction
    • Li C.Y., Mao X., Wei L. Genes and (common) pathways underlying drug addiction. PLoS Comput. Biol. 2008, 4:e2.
    • (2008) PLoS Comput. Biol. , vol.4 , pp. e2
    • Li, C.Y.1    Mao, X.2    Wei, L.3
  • 39
    • 25644435002 scopus 로고    scopus 로고
    • Math1 is expressed in temporally discrete pools of cerebellar rhombic-lip neural progenitors
    • Machold R., Fishell G. Math1 is expressed in temporally discrete pools of cerebellar rhombic-lip neural progenitors. Neuron 2005, 48:17-24.
    • (2005) Neuron , vol.48 , pp. 17-24
    • Machold, R.1    Fishell, G.2
  • 40
    • 0034630503 scopus 로고    scopus 로고
    • Nuclear topology of murine, cerebellar Purkinje neurons: changes as a function of development
    • Martou G., De Boni U. Nuclear topology of murine, cerebellar Purkinje neurons: changes as a function of development. Exp. Cell Res. 2000, 256:131-139.
    • (2000) Exp. Cell Res. , vol.256 , pp. 131-139
    • Martou, G.1    De Boni, U.2
  • 41
    • 0000030724 scopus 로고
    • An autoradiographic analysis of histogenesis in the mouse cerebellum
    • Miale I.L., Sidman R.L. An autoradiographic analysis of histogenesis in the mouse cerebellum. Exp. Neurol. 1961, 4:277-296.
    • (1961) Exp. Neurol. , vol.4 , pp. 277-296
    • Miale, I.L.1    Sidman, R.L.2
  • 42
    • 25144511541 scopus 로고    scopus 로고
    • Autism and Aspergers disorder: are they movement disorders involving the cerebellum and/or basal ganglia?
    • Nayate A., Bradshaw J.L., Rinehart N.J. Autism and Aspergers disorder: are they movement disorders involving the cerebellum and/or basal ganglia?. Brain Res. Bull. 2005, 67:327-334.
    • (2005) Brain Res. Bull. , vol.67 , pp. 327-334
    • Nayate, A.1    Bradshaw, J.L.2    Rinehart, N.J.3
  • 43
    • 80054007194 scopus 로고    scopus 로고
    • Conserved and differential gene interactions in dynamical biological systems
    • Ouyang Z., Song M., Guth R., Ha T.J., Larouche M., Goldowitz D. Conserved and differential gene interactions in dynamical biological systems. Bioinformatics 2011, 27:2851-2858.
    • (2011) Bioinformatics , vol.27 , pp. 2851-2858
    • Ouyang, Z.1    Song, M.2    Guth, R.3    Ha, T.J.4    Larouche, M.5    Goldowitz, D.6
  • 44
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla G., Derenyi I., Farkas I., Vicsek T. Uncovering the overlapping community structure of complex networks in nature and society. Nature 2005, 435:814-818.
    • (2005) Nature , vol.435 , pp. 814-818
    • Palla, G.1    Derenyi, I.2    Farkas, I.3    Vicsek, T.4
  • 45
    • 70449448956 scopus 로고    scopus 로고
    • Threshold selection in gene co-expression networks using spectral graph theory techniques
    • Perkins A.D., Langston M.A. Threshold selection in gene co-expression networks using spectral graph theory techniques. BMC Bioinform. 2009, 10.
    • (2009) BMC Bioinform. , vol.10
    • Perkins, A.D.1    Langston, M.A.2
  • 46
    • 67651212036 scopus 로고    scopus 로고
    • Brain classification reveals the right cerebellum as the best biomarker of dyslexia
    • Pernet C.R., Poline J.B., Demonet J.F., Rousselet G.A. Brain classification reveals the right cerebellum as the best biomarker of dyslexia. BMC Neurosci. 2009, 10:67.
    • (2009) BMC Neurosci. , vol.10 , pp. 67
    • Pernet, C.R.1    Poline, J.B.2    Demonet, J.F.3    Rousselet, G.A.4
  • 47
    • 0036173128 scopus 로고    scopus 로고
    • Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development
    • Sasik R., Iranfar N., Hwa T., Loomis W.F. Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development. Bioinformatics 2002, 18:61-66.
    • (2002) Bioinformatics , vol.18 , pp. 61-66
    • Sasik, R.1    Iranfar, N.2    Hwa, T.3    Loomis, W.F.4
  • 48
    • 53249098510 scopus 로고    scopus 로고
    • Cerebellar development transcriptome database (CDT-DB): profiling of spatio-temporal gene expression during the postnatal development of mouse cerebellum
    • Sato A., Sekine Y., Saruta C., Nishibe H., Morita N., Sato Y., Sadakata T., Shinoda Y., Kojima T., Furuichi T. Cerebellar development transcriptome database (CDT-DB): profiling of spatio-temporal gene expression during the postnatal development of mouse cerebellum. Neural Netw. 2008, 21:1056-1069.
    • (2008) Neural Netw. , vol.21 , pp. 1056-1069
    • Sato, A.1    Sekine, Y.2    Saruta, C.3    Nishibe, H.4    Morita, N.5    Sato, Y.6    Sadakata, T.7    Shinoda, Y.8    Kojima, T.9    Furuichi, T.10
  • 53
    • 33747873573 scopus 로고    scopus 로고
    • Cell-type specific proximity of centromeric domains of one homologue each of chromosomes 2 and 11 in nuclei of cerebellar Purkinje neurons
    • Vadakkan K.I., Li B., De Boni U. Cell-type specific proximity of centromeric domains of one homologue each of chromosomes 2 and 11 in nuclei of cerebellar Purkinje neurons. Chromosoma 2006, 115:395-402.
    • (2006) Chromosoma , vol.115 , pp. 395-402
    • Vadakkan, K.I.1    Li, B.2    De Boni, U.3
  • 55
    • 0346494761 scopus 로고    scopus 로고
    • GenePaint.org: an atlas of gene expression patterns in the mouse embryo
    • Visel A., Thaller C., Eichele G. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004, 32:D552-D556.
    • (2004) Nucleic Acids Res. , vol.32 , pp. D552-D556
    • Visel, A.1    Thaller, C.2    Eichele, G.3
  • 57
    • 62549102539 scopus 로고    scopus 로고
    • Defining the role of GABA in cortical development
    • Wang D.D., Kriegstein A.R. Defining the role of GABA in cortical development. J. Physiol. 2009, 587:1873-1879.
    • (2009) J. Physiol. , vol.587 , pp. 1873-1879
    • Wang, D.D.1    Kriegstein, A.R.2
  • 58
    • 0035409307 scopus 로고    scopus 로고
    • Genetic regulation of cerebellar development
    • Wang V.Y., Zoghbi H.Y. Genetic regulation of cerebellar development. Nat. Rev. Neurosci. 2001, 2:484-491.
    • (2001) Nat. Rev. Neurosci. , vol.2 , pp. 484-491
    • Wang, V.Y.1    Zoghbi, H.Y.2
  • 59
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • (article 17)
    • Zhang B., Horvath S. A general framework for weighted gene co-expression network analysis. Statist. Appl. Genet. Mol. Biol. 2005, 4. (article 17).
    • (2005) Statist. Appl. Genet. Mol. Biol. , vol.4
    • Zhang, B.1    Horvath, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.