메뉴 건너뛰기




Volumn 9, Issue 12, 2014, Pages

Estrogen induces global reorganization of chromatin structure In human breast cancer cells

Author keywords

[No Author keywords available]

Indexed keywords

ESTROGEN; ESTROGEN RECEPTOR ALPHA; ESTRADIOL;

EID: 84915756658     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0113354     Document Type: Article
Times cited : (49)

References (61)
  • 1
  • 2
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
    • Lanctôt C, Cheutin T, Cremer M, Cavalli G, Cremer T (2007) Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nature Reviews Genetics 8:104-115.
    • (2007) Nature Reviews Genetics , vol.8 , pp. 104-115
    • Lanctôt, C.1    Cheutin, T.2    Cremer, M.3    Cavalli, G.4    Cremer, T.5
  • 4
    • 83255165727 scopus 로고    scopus 로고
    • High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
    • Fudenberg G, Getz G, Meyerson M, Mirny LA (2011) High order chromatin architecture shapes the landscape of chromosomal alterations in cancer. Nature Biotechnology 29:1109-1113.
    • (2011) Nature Biotechnology , vol.29 , pp. 1109-1113
    • Fudenberg, G.1    Getz, G.2    Meyerson, M.3    Mirny, L.A.4
  • 5
    • 84878011578 scopus 로고    scopus 로고
    • Exploring the three-dimensional organization of genomes: Interpreting chromatin interaction data
    • Dekker J, Marti-Renom MA, Mirny LA (2013) Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. Nature Reviews Genetics 14:390-403.
    • (2013) Nature Reviews Genetics , vol.14 , pp. 390-403
    • Dekker, J.1    Marti-Renom, M.A.2    Mirny, L.A.3
  • 6
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, et al. (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nature Genetics 38:1348-1354.
    • (2006) Nature Genetics , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5
  • 7
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden E, Van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326:289-293.
    • (2009) Science , vol.326 , pp. 289-293
    • Lieberman-Aiden, E.1    Van Berkum, N.L.2    Williams, L.3    Imakaev, M.4    Ragoczy, T.5
  • 8
    • 84856747483 scopus 로고    scopus 로고
    • Three-dimensional folding and functional organization principles of the Drosophila genome
    • Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, et al. (2012) Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148:458-472.
    • (2012) Cell , vol.148 , pp. 458-472
    • Sexton, T.1    Yaffe, E.2    Kenigsberg, E.3    Bantignies, F.4    Leblanc, B.5
  • 9
    • 79952279926 scopus 로고    scopus 로고
    • The fractal globule as a model of chromatin architecture in the cell
    • Mirny LA (2011) The fractal globule as a model of chromatin architecture in the cell. Chromosome Research 19:37-51.
    • (2011) Chromosome Research , vol.19 , pp. 37-51
    • Mirny, L.A.1
  • 11
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, et al. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485:376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5
  • 12
    • 84866120986 scopus 로고    scopus 로고
    • Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages
    • Lan X, Witt H, Katsumura K, Ye Z, Wang Q, et al. (2012) Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages. Nucleic Acids Research 40:7690-7704.
    • (2012) Nucleic Acids Research , vol.40 , pp. 7690-7704
    • Lan, X.1    Witt, H.2    Katsumura, K.3    Ye, Z.4    Wang, Q.5
  • 16
    • 33750203582 scopus 로고    scopus 로고
    • Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
    • Zhao Z, Tavoosidana G, Sjölinder M, Göndör A, Mariano P, et al. (2006) Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nature Genetics 38:1341-1347.
    • (2006) Nature Genetics , vol.38 , pp. 1341-1347
    • Zhao, Z.1    Tavoosidana, G.2    Sjölinder, M.3    Göndör, A.4    Mariano, P.5
  • 17
    • 33749400168 scopus 로고    scopus 로고
    • Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
    • Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, et al. (2006) Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements. Genome Research 16:1299-1309.
    • (2006) Genome Research , vol.16 , pp. 1299-1309
    • Dostie, J.1    Richmond, T.A.2    Arnaout, R.A.3    Selzer, R.R.4    Lee, W.L.5
  • 18
    • 84862917808 scopus 로고    scopus 로고
    • Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
    • Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L (2012) Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nature Biotechnology 30:90-98.
    • (2012) Nature Biotechnology , vol.30 , pp. 90-98
    • Kalhor, R.1    Tjong, H.2    Jayathilaka, N.3    Alber, F.4    Chen, L.5
  • 19
    • 70449103609 scopus 로고    scopus 로고
    • An oestrogen-receptor-alpha-bound human chromatin interactome
    • Fullwood MJ, Liu MHH, Pan YFF, Liu J, Xu H, et al. (2009) An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 462:58-64.
    • (2009) Nature , vol.462 , pp. 58-64
    • Fullwood, M.J.1    Liu, M.H.H.2    Pan, Y.F.F.3    Liu, J.4    Xu, H.5
  • 20
    • 84862908850 scopus 로고    scopus 로고
    • Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
    • Li G, Ruan X, Auerbach RK, Sandhu KSS, Zheng M, et al. (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148:84-98.
    • (2012) Cell , vol.148 , pp. 84-98
    • Li, G.1    Ruan, X.2    Auerbach, R.K.3    Sandhu, K.S.S.4    Zheng, M.5
  • 21
    • 80054984337 scopus 로고    scopus 로고
    • Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
    • Yaffe E, Tanay A (2011) Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nature Genetics 43:1059-1065.
    • (2011) Nature Genetics , vol.43 , pp. 1059-1065
    • Yaffe, E.1    Tanay, A.2
  • 22
    • 84866997011 scopus 로고    scopus 로고
    • Iterative correction of Hi-C data reveals hallmarks of chromosome organization
    • Imakaev M, Fudenberg G, McCord RP, Naumova N, Goloborodko A, et al. (2012) Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nature Methods 9:999-1003.
    • (2012) Nature Methods , vol.9 , pp. 999-1003
    • Imakaev, M.1    Fudenberg, G.2    McCord, R.P.3    Naumova, N.4    Goloborodko, A.5
  • 24
    • 84870463249 scopus 로고    scopus 로고
    • HiCNorm: Removing biases in Hi-C data via Poisson regression
    • Hu M, Deng K, Selvaraj S, Qin Z, Ren B, et al. (2012) HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinformatics 28:3131-3133.
    • (2012) Bioinformatics , vol.28 , pp. 3131-3133
    • Hu, M.1    Deng, K.2    Selvaraj, S.3    Qin, Z.4    Ren, B.5
  • 25
    • 84886398450 scopus 로고    scopus 로고
    • CytoHiC: A cytoscape plugin for visual comparison of Hi-C networks
    • Shavit Y, Lio' P (2013) CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks. Bioinformatics 29:1206-1207.
    • (2013) Bioinformatics , vol.29 , pp. 1206-1207
    • Shavit, Y.1    Lio, P.2
  • 26
    • 80054875965 scopus 로고    scopus 로고
    • Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
    • Rousseau M, Fraser J, Ferraiuolo M, Dostie J, Blanchette M (2011) Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling. BMC Bioinformatics 12:414.
    • (2011) BMC Bioinformatics , vol.12 , pp. 414
    • Rousseau, M.1    Fraser, J.2    Ferraiuolo, M.3    Dostie, J.4    Blanchette, M.5
  • 28
    • 0037165965 scopus 로고    scopus 로고
    • Visualizing chromatin dynamics in interphase nuclei
    • Gasser SM (2002) Visualizing chromatin dynamics in interphase nuclei. Science 296:1412-1416.
    • (2002) Science , vol.296 , pp. 1412-1416
    • Gasser, S.M.1
  • 31
    • 0345039879 scopus 로고    scopus 로고
    • Global chromosome positions are transmitted through mitosis in mammalian cells
    • Gerlich D, Beaudouin J, Kalbfuss B, Daigle N, Eils R, et al. (2003) Global chromosome positions are transmitted through mitosis in mammalian cells. Cell 112:751-764.
    • (2003) Cell , vol.112 , pp. 751-764
    • Gerlich, D.1    Beaudouin, J.2    Kalbfuss, B.3    Daigle, N.4    Eils, R.5
  • 34
    • 33846207899 scopus 로고    scopus 로고
    • Diverse gene expression and DNA methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant
    • Fan M, Yan PS, Hartman-Frey C, Chen L, Paik H, et al. (2006) Diverse gene expression and DNA methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant. Cancer Research 66:11954-11966.
    • (2006) Cancer Research , vol.66 , pp. 11954-11966
    • Fan, M.1    Yan, P.S.2    Hartman-Frey, C.3    Chen, L.4    Paik, H.5
  • 35
    • 77952966794 scopus 로고    scopus 로고
    • Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping
    • Hsu PY, Hsu HK, Singer GA, Yan PS, Rodriguez BA, et al. (2010) Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping. Genome Research 20:733-744.
    • (2010) Genome Research , vol.20 , pp. 733-744
    • Hsu, P.Y.1    Hsu, H.K.2    Singer, G.A.3    Yan, P.S.4    Rodriguez, B.A.5
  • 36
    • 84881510124 scopus 로고    scopus 로고
    • Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer
    • Hsu PY, Hsu HK, Lan X, Juan L, Yan PS, et al. (2013) Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer. Cancer Cell 24:197-212.
    • (2013) Cancer Cell , vol.24 , pp. 197-212
    • Hsu, P.Y.1    Hsu, H.K.2    Lan, X.3    Juan, L.4    Yan, P.S.5
  • 40
    • 59949091427 scopus 로고    scopus 로고
    • A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
    • Hampton OA, Den Hollander P, Miller CA, Delgado DA, Li J, et al. (2009) A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Research 19:167-177.
    • (2009) Genome Research , vol.19 , pp. 167-177
    • Hampton, O.A.1    Den Hollander, P.2    Miller, C.A.3    Delgado, D.A.4    Li, J.5
  • 41
    • 84868198825 scopus 로고    scopus 로고
    • Breast cancer riskassociated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
    • Cowper-Sal Lari R, Zhang X, Wright JB, Bailey SD, Cole MD, et al. (2012) Breast cancer riskassociated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression. Nature Genetics 44:1191-1198.
    • (2012) Nature Genetics , vol.44 , pp. 1191-1198
    • Cowper-Sal Lari, R.1    Zhang, X.2    Wright, J.B.3    Bailey, S.D.4    Cole, M.D.5
  • 43
    • 33745416080 scopus 로고    scopus 로고
    • Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
    • Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, et al. (2006) Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nature Methods 3:511-518.
    • (2006) Nature Methods , vol.3 , pp. 511-518
    • Sabo, P.J.1    Kuehn, M.S.2    Thurman, R.3    Johnson, B.E.4    Johnson, E.M.5
  • 44
    • 49649125042 scopus 로고    scopus 로고
    • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    • Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, et al. (2008) Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454:766-770.
    • (2008) Nature , vol.454 , pp. 766-770
    • Meissner, A.1    Mikkelsen, T.S.2    Gu, H.3    Wernig, M.4    Hanna, J.5
  • 45
    • 82655189429 scopus 로고    scopus 로고
    • A co-ordinated interaction between CTCF and ER in breast cancer cells
    • Innes CR, Brown G, Carroll J (2011) A co-ordinated interaction between CTCF and ER in breast cancer cells. BMC Genomics 12:593.
    • (2011) BMC Genomics , vol.12 , pp. 593
    • Innes, C.R.1    Brown, G.2    Carroll, J.3
  • 47
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium TEP (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489:57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Consortium, T.E.P.1
  • 48
    • 77952062004 scopus 로고    scopus 로고
    • Estrogen receptor α controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs
    • Cicatiello L, Mutarelli M, Grober OM, Paris O, Ferraro L, et al. (2010) Estrogen receptor α controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs. The American Journal of Pathology 176:2113-2130.
    • (2010) The American Journal of Pathology , vol.176 , pp. 2113-2130
    • Cicatiello, L.1    Mutarelli, M.2    Grober, O.M.3    Paris, O.4    Ferraro, L.5
  • 49
    • 78249233850 scopus 로고    scopus 로고
    • RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation
    • Wang G, Wang Y, Shen C, Huang YW, Huang K, et al. (2010) RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation. PLoS ONE 5:e13798.
    • (2010) PLoS ONE , vol.5 , pp. e13798
    • Wang, G.1    Wang, Y.2    Shen, C.3    Huang, Y.W.4    Huang, K.5
  • 51
    • 33845925394 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation and microarray-based analysis of protein location
    • Lee TI, Johnstone SE, Young RA (2006) Chromatin immunoprecipitation and microarray-based analysis of protein location. Nature Protocols 1:729-748.
    • (2006) Nature Protocols , vol.1 , pp. 729-748
    • Lee, T.I.1    Johnstone, S.E.2    Young, R.A.3
  • 52
    • 34548565667 scopus 로고    scopus 로고
    • Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
    • Hagège H, Klous P, Braem C, Splinter E, Dekker J, et al. (2007) Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nature Protocols 2:1722-1733.
    • (2007) Nature Protocols , vol.2 , pp. 1722-1733
    • Hagège, H.1    Klous, P.2    Braem, C.3    Splinter, E.4    Dekker, J.5
  • 54
    • 77952356340 scopus 로고    scopus 로고
    • Activation of estrogen-responsive genes does not require their nuclear co-localization
    • Kocanova S, Kerr EA, Rafique S, Boyle S, Katz E, et al. (2010) Activation of estrogen-responsive genes does not require their nuclear co-localization. PLoS Genetics 6:e1000922.
    • (2010) PLoS Genetics , vol.6 , pp. e1000922
    • Kocanova, S.1    Kerr, E.A.2    Rafique, S.3    Boyle, S.4    Katz, E.5
  • 57
    • 0036683485 scopus 로고    scopus 로고
    • Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes
    • Belandia B, Orford RL, Hurst HC, Parker MG (2002) Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes. The EMBO Journal 21:4094-4103.
    • (2002) The EMBO Journal , vol.21 , pp. 4094-4103
    • Belandia, B.1    Orford, R.L.2    Hurst, H.C.3    Parker, M.G.4
  • 58
    • 0033621962 scopus 로고    scopus 로고
    • 17b-estradiol inhibits apoptosis in MCF-7 cells, inducing bcl-2 expression via two estrogen-responsive elements present in the coding sequence
    • Perillo B, Sasso A, Abbondanza C, Palumbo G (2000) 17b-estradiol inhibits apoptosis in MCF-7 cells, inducing bcl-2 expression via two estrogen-responsive elements present in the coding sequence. Molecular and Cellular Biology 20:2890-2901.
    • (2000) Molecular and Cellular Biology , vol.20 , pp. 2890-2901
    • Perillo, B.1    Sasso, A.2    Abbondanza, C.3    Palumbo, G.4
  • 59
    • 0031587883 scopus 로고    scopus 로고
    • Daxx, a novel Fas-binding protein that activates JNK and apoptosis
    • Yang X, Khosravi-Far R, Chang HY, Baltimore D (1997) Daxx, a novel Fas-binding protein that activates JNK and apoptosis. Cell 89:1067-1076.
    • (1997) Cell , vol.89 , pp. 1067-1076
    • Yang, X.1    Khosravi-Far, R.2    Chang, H.Y.3    Baltimore, D.4
  • 61
    • 79151478493 scopus 로고    scopus 로고
    • Genome organization influences partner selection for chromosomal rearrangements
    • Wijchers PJ, De Laat W (2011) Genome organization influences partner selection for chromosomal rearrangements. Trends in Genetics 27:63-71.
    • (2011) Trends in Genetics , vol.27 , pp. 63-71
    • Wijchers, P.J.1    De Laat, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.