Kinetics of hydrogen atom abstraction from substrate by an active site thiyl radical in ribonucleotide reductase

Journal of the American Chemical Society

Volumn 136, Issue 46, 2014, Pages 16210-16216

  Olshansky, Lisa ^a,b   Pizano, Arturo A ^a   Wei, Yifeng ^b   Stubbe, Joanne ^b   Nocera, Daniel G ^a  

^a HARVARD UNIVERSITY   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; AMINO ACIDS; ATOMS; ENZYME ACTIVITY; ESCHERICHIA COLI; FREE RADICAL REACTIONS; KINETICS; POLYPEPTIDES; RATE CONSTANTS; REDOX REACTIONS; SUBSTRATES; TUNGSTEN COMPOUNDS;

CONFORMATIONAL CHANGE; HYDROGEN ATOM ABSTRACTION; PHOTOCHEMICAL GENERATION; PROTON-COUPLED ELECTRON TRANSFER; RIBONUCLEOTIDE REDUCTASE; THIYL RADICALS; TRANSIENT ABSORPTION SPECTROSCOPIES; TYROSYL RADICALS;

C (PROGRAMMING LANGUAGE);

AMINO ACID; HYDROGEN; RADICAL; RIBONUCLEOTIDE REDUCTASE; FREE RADICAL;

ABSORPTION SPECTROSCOPY; ARTICLE; CATALYSIS; CHEMICAL STRUCTURE; CONFORMATIONAL TRANSITION; ELECTRON TRANSPORT; KINETICS; PHOTOLYSIS; STEADY STATE; CHEMISTRY; ENZYME ACTIVE SITE; ENZYMOLOGY; ESCHERICHIA COLI; METABOLISM;

CATALYTIC DOMAIN; ELECTRON TRANSPORT; ESCHERICHIA COLI; FREE RADICALS; HYDROGEN; KINETICS; MODELS, MOLECULAR; RIBONUCLEOTIDE REDUCTASES;

EID: 84912571570     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja507313w     Document Type: Article

References (62)

1. Cukier, R. I.; Nocera, D. G. Annu. Rev. Phys. Chem. 1998, 49, 337-369
2. Huynh, M-H. V.; Meyer, T. J. Chem. Rev. 2007, 107, 5004-5064
3. Hammes-Schiffer, S. Acc. Chem. Res. 2009, 42, 1881-1889
4. Cook, T. R.; Dogutan, D. K.; Reece, S. Y.; Surendranath, Y.; Teets, T. S.; Nocera, D. G. Chem. Rev. 2010, 110, 6474-6502
5. Nocera, D. G. Inorg. Chem. 2009, 48, 10001-10007
6. Dempsey, J. L.; Winkler, J. R.; Gray, H. B. Chem. Rev. 2010, 110, 7024-7039
7. Reece, S. Y.; Nocera, D. G. Annu. Rev. Biochem. 2009, 78, 673-699
8. Ge, J.; Yu, G.; Ator, M. A.; Stubbe, J. Biochemistry 2003, 42, 10071-10083
9. Seyedsayamdost, M. R.; Stubbe, J. J. Am. Chem. Soc. 2007, 129, 2226-2227
10. Uhlin, U.; Eklund, H. Nature 1994, 370, 533-539
11. Bennati, M.; Robblee, J. H.; Mugnaini, V.; Stubbe, J.; Freed, J. H.; Borbat, P. J. Am. Chem. Soc. 2005, 127, 15014-15015
12. Seyedsayamdost, M. R.; Chan, C. T. Y.; Mugnaini, V.; Stubbe, J.; Bennati, M. J. Am. Chem. Soc. 2007, 129, 15748-15749
13. Minnihan, E. C.; Ando, N.; Brignole, E. J.; Olshansky, L.; Chittuluru, J.; Asturias, F. J.; Drennan, C. L.; Nocera, D. G.; Stubbe, J. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 3835-3840
14. Stubbe, J.; Nocera, D. G.; Yee, C. S.; Chang, M. C. Y. Chem. Rev. 2003, 103, 2167-2202
15. Minnihan, E. C.; Nocera, D. G.; Stubbe, J. Acc. Chem. Res. 2013, 46, 2524-2535
16. Stubbe, J.; van der Donk, W. A. Chem. Rev. 1998, 98, 705-762
17. Brown, N. C.; Reichard, P. J. Mol. Biol. 1969, 25-38
18. Wörsdörfer, B.; Conner, D. A.; Yokoyama, K.; Livada, J.; Seyedseyamdost, M. R.; Jiang, W.; Silakov, A.; Stubbe, J.; Bollinger, J. M., Jr.; Krebs, C. J. Am. Chem. Soc. 2013, 135, 8585-8593
19. Seyedsayamdost, M. R.; Stubbe, J. J. Am. Chem. Soc. 2006, 128, 2522-2523
20. Seyedsayamdost, M. R.; Stubbe, J. J. Am. Chem. Soc. 2006, 128, 2522-2523
21. Seyedsayamdost, M. R.; Xie, J.; Cham, C. T. Y.; Schultz, P. G.; Stubbe, J. J. Am. Chem. Soc. 2007, 129, 15060-15071
22. Stubbe, J.; Ackles, D. J. Biol. Chem. 1980, 255, 8027-8030
23. Stubbe, J.; Ator, M.; Krenitsky, T. J. Biol. Chem. 1983, 258, 1625-1630
24. Licht, S.; Stubbe, J. Compr. Nat. Prod. Chem. 1999, 5, 163-203
25. Chang, M. C. Y.; Yee, C. S.; Stubbe, J.; Nocera, D. G. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 6882-6887
26. Reece, S. Y.; Seyedsayamdost, M. R.; Stubbe, J.; Nocera, D. G. J. Am. Chem. Soc. 2007, 129, 8500-8509
27. Reece, S. Y.; Seyedsayamdost, M. R.; Stubbe, J.; Nocera, D. G. J. Am. Chem. Soc. 2007, 129, 13828-13830
28. Holder, P. G.; Pizano, A. A.; Anderson, B. L.; Stubbe, J.; Nocera, D. G. J. Am. Chem. Soc. 2012, 134, 1172-1180
29. Pizano, A. A.; Lutterman, D. A.; Holder, P. G.; Teets, T. S.; Stubbe, J.; Nocera, D. G. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 39-43
30. Pizano, A. A.; Olshansky, L.; Holder, P. G.; Stubbe, J.; Nocera, D. G. J. Am. Chem. Soc. 2013, 135, 13250-13253
31. Minnihan, E. C.; Young, D. D.; Schultz, P. G.; Stubbe, J. J. Am. Chem. Soc. 2011, 133, 15942-15945
32. Ando, N.; Brignole, E. J.; Zimanyi, C. M.; Funk, M. A.; Yokoyama, K.; Asturias, F. J.; Stubbe, J.; Drennan, C. L. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 21046-21051
33. Högbom, M.; Galander, M.; Andersson, M.; Kolberg, M.; Hofbauer, W.; Lassmann, G.; Nordlund, P.; Lendzian, F. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 3209-3214
34. Eriksson, M.; Uhlin, U.; Ramaswamy, S.; Ekberg, M.; Regnström, K.; Sjöberg, B-M.; Eklund, H. Structure 1997, 5, 1077-1092
35. Minnihan, E. C.; Seyedsayamdost, M. R.; Uhlin, U.; Stubbe, J. J. Am. Chem. Soc. 2011, 133, 9430-9440
36. Minnihan, E. C., Ph.D. Thesis, Massachusetts Institute of Technology, 2012.
37. Pigiet, V. P.; Conley, R. R. J. Biol. Chem. 1977, 252, 6367-6372
38. Lunn, C. A.; Kathju, S.; Wallace, B. J.; Kushner, S. R.; Pigiet, V. J. Biol. Chem. 1984, 259, 10469-10474
39. Chen, H.; Gollnick, P.; Phillips, R. S. Eur. J. Biochem. 1995, 229, 540-549
40. Yokoyama, K.; Uhlin, U.; Stubbe, J. J. Am. Chem. Soc. 2010, 132, 8385-8397
41. Reece, S. Y.; Lutterman, D. A.; Seyedsayamdost, M. R.; Stubbe, J.; Nocera, D. G. Biochemistry 2009, 48, 5832-5838
42. Seyedsayamdost, M. R.; Reece, S. Y.; Nocera, D. G.; Stubbe, J. J. Am. Chem. Soc. 2006, 128, 1569-1579
43. Steeper, J. R.; Steuart, C. D. Anal. Biochem. 1970, 34, 123-130
44. Benson, S. W. Chem. Rev. 1978, 78, 23-35
45. McMillen, D. F.; Golden, D. M. Annu. Rev. Phys. Chem. 1982, 33, 493-532
46. Yokoyama, K.; Smith, A. A.; Corzilius, B.; Griffin, R. G.; Stubbe, J. J. Am. Chem. Soc. 2011, 133, 18420-18432
47. Argirević, T.; Riplinger, C.; Stubbe, J.; Neese, F.; Bennati, M. J. Am. Chem. Soc. 2012, 134, 17661-17670
48. Lawrence, C. C.; Bennati, M.; Obias, H. V.; Bar, G.; Griffin, R. G.; Stubbe, J. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 8979-8984
49. Yokoyama, K.; Uhlin, U.; Stubbe, J. J. Am. Chem. Soc. 2010, 132, 15368-15379
50. Folkes, L. K.; Trujillo, M.; Bartesaghi, S.; Radi, R.; Wardman, P. Arch. Biochem. Biophys. 2011, 506, 242-249
51. Madej, E.; Wardman, P. Arch. Biochem. Biophys. 2007, 462, 94-102
52. Sonntag, C.; Schöneich, C.; Bonifačić, M.; Dillinger, U.; Asmus, K-D.; Dunster, C.; Willson, R. L.; Prütz, W. A. In Sulfur-Centered Reactive Intermediates in Chemistry and Biology; Catgilialoglu, C.; Asum, K-D., Eds.; Plenum Press: New York, 1990; Vol. A, series 197, pp 359-399.
53. Schöneich, C.; Bonifacic, M.; Asmus, K-D. Free Radic. Res. Commun. 1989, 6, 393-405
54. Pogocki, D.; Schöneich, C. Free Radic. Biol. Med. 2001, 31, 98-107
55. Schöneich, C.; Asmus, K-D.; Bonifačić J. Chem. Soc., Faraday Trans. 1995, 91, 1923-1930
56. Tamba, M.; Quintiliani, M. Radiat. Phys. Chem. 1984, 23, 259-263
57. Steenken, S.; Davies, M. J.; Gilbert, B. C. J. Chem. Soc., Perkin. Trans. 1986, 2, 1003-1010
58. Bansal, K. M.; Grätzel, M.; Henglein, A.; Janata, E. J. Phys. Chem. 1973, 77, 16-19
59. Lenz, R.; Giese, B. J. Am. Chem. Soc. 1997, 119, 2784-2794
60. Nauser, T.; Casi, G.; Koppenol, W. H.; Schöneich, C. J. Phys. Chem. B 2008, 112, 15034-15044
61. Nauser, T.; Schöneich, C. J. Am. Chem. Soc. 2003, 125, 2042-2043
62. Mason, R. P.; Rao, D. N. R. Sulfur-Centered Reactive Intermediates in Chemistry and Biology; Catgilialoglu, C., Asum, K-D., Plenum Press: New York, 1990; Vol. A, series 197, pp 401-408