-
1
-
-
0034734323
-
DNA ligases in the repair and replication of DNA
-
Timson DJ, Singleton MR and Wigley DB. DNA ligases in the repair and replication of DNA. Mutat Res 2000, 460: 301-318.
-
(2000)
Mutat Res
, vol.460
, pp. 301-318
-
-
Timson, D.J.1
Singleton, M.R.2
Wigley, D.B.3
-
3
-
-
0016273515
-
DNA ligase: Structure, mechanism, and function
-
Lehman IR. DNA ligase: structure, mechanism, and function. Science 1974, 186: 790-797.
-
(1974)
Science
, vol.186
, pp. 790-797
-
-
Lehman, I.R.1
-
4
-
-
50649116450
-
Eukaryotic DNA ligases: Structural and functional insights
-
Ellenberger T and Tomkinson AE. Eukaryotic DNA ligases: structural and functional insights. Annu Rev Biochem 2008, 77: 313-338.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 313-338
-
-
Ellenberger, T.1
Tomkinson, A.E.2
-
5
-
-
0030873236
-
Functional characterization of the T4 DNA ligase: A new insight into the mechanism of action
-
Rossi R, Montecucco A, Ciarrocchi G and Biamonti G. Functional characterization of the T4 DNA ligase: a new insight into the mechanism of action. Nucleic Acids Res 1997, 25: 2106-2113.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2106-2113
-
-
Rossi, R.1
Montecucco, A.2
Ciarrocchi, G.3
Biamonti, G.4
-
6
-
-
0014877121
-
Studies on polynucleotides. C. A novel joining reaction catalyzed by the T4-polynucleotide ligase
-
Sgaramella V, Van de Sande JH and Khorana HG. Studies on polynucleotides, C. A novel joining reaction catalyzed by the T4-polynucleotide ligase. Proc Natl Acad Sci USA 1970, 67: 1468-1475.
-
(1970)
Proc Natl Acad Sci USA
, vol.67
, pp. 1468-1475
-
-
Sgaramella, V.1
Van De Sande, J.H.2
Khorana, H.G.3
-
7
-
-
0021112655
-
Primary structure and genetic organization of phage T4 DNA ligase
-
Armstrong J, Brown RS and Tsugita A. Primary structure and genetic organization of phage T4 DNA ligase. Nucleic Acids Res 1983, 11: 7145-7156.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 7145-7156
-
-
Armstrong, J.1
Brown, R.S.2
Tsugita, A.3
-
8
-
-
80052236108
-
Nick sealing by T4 DNA ligase on a modified DNA template: Tethering a functional molecule on D-threoninol
-
Liang X, Fujioka K and Asanuma H. Nick sealing by T4 DNA ligase on a modified DNA template: tethering a functional molecule on D-threoninol. Chemistry 2011, 17: 10388-10396.
-
(2011)
Chemistry
, vol.17
, pp. 10388-10396
-
-
Liang, X.1
Fujioka, K.2
Asanuma, H.3
-
9
-
-
0037126846
-
Kinetic mechanism of the Mg2+-dependent nucleotidyl transfer catalyzed by T4 DNA and RNA ligases
-
Cherepanov AV and de Vries S. Kinetic mechanism of the Mg2+-dependent nucleotidyl transfer catalyzed by T4 DNA and RNA ligases. J Biol Chem 2002, 277: 1695-1704.
-
(2002)
J Biol Chem
, vol.277
, pp. 1695-1704
-
-
Cherepanov, A.V.1
De Vries, S.2
-
10
-
-
84876716976
-
A novel sensitive and selective ligation-based ATP assay using a molecular beacon
-
Ma C, Tang Z,Wang K, Yang X and TanW. A novel sensitive and selective ligation-based ATP assay using a molecular beacon. Analyst 2013, 138: 3013-3017.
-
(2013)
Analyst
, vol.138
, pp. 3013-3017
-
-
Ma, C.1
Tang, Z.2
Wang, K.3
Yang, X.4
Tan, W.5
-
11
-
-
0035125009
-
Joining of short DNA oligonucleotides with base pair mismatches by T4 DNA ligase
-
Cherepanov A, Yildirim E and de Vries S. Joining of short DNA oligonucleotides with base pair mismatches by T4 DNA ligase. J Biochem 2001, 129: 61-68.
-
(2001)
J Biochem
, vol.129
, pp. 61-68
-
-
Cherepanov, A.1
Yildirim, E.2
De Vries, S.3
-
12
-
-
72449191194
-
Impact of sugar pucker on base pair and mispair stability
-
Williams AA, Darwanto A, Theruvathu JA, Burdzy A, Neidigh JW and Sowers LC. Impact of sugar pucker on base pair and mispair stability. Biochemistry 2009, 48: 11994-12004.
-
(2009)
Biochemistry
, vol.48
, pp. 11994-12004
-
-
Williams, A.A.1
Darwanto, A.2
Theruvathu, J.A.3
Burdzy, A.4
Neidigh, J.W.5
Sowers, L.C.6
-
13
-
-
0030727765
-
The ups and downs of nucleic acid duplex stability: Structure-stability studies on chemically-modified DNA:RNA duplexes
-
Freier SM and Altmann KH. The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes. Nucleic Acids Res 1997, 25: 4429-4443.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4429-4443
-
-
Freier, S.M.1
Altmann, K.H.2
-
14
-
-
84880549834
-
Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides
-
Zhou Y, Kierzek E, Loo ZP, Antonio M, Yau YH, Chuah YW and Geifman-Shochat S, et al. Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides. Nucleic Acids Res 2013, 41: 6664-6673.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 6664-6673
-
-
Zhou, Y.1
Kierzek, E.2
Loo, Z.P.3
Antonio, M.4
Yau, Y.H.5
Chuah, Y.W.6
Geifman-Shochat, S.7
-
15
-
-
80051733474
-
A sensitive alternative for microRNA in situ hybridizations using probes of 20-O-methyl RNA+LNA
-
Soe MJ, Moller T, Dufva M and Holmstrom K. A sensitive alternative for microRNA in situ hybridizations using probes of 20-O-methyl RNA+LNA. J Histochem Cytochem 2011, 59: 661-672.
-
(2011)
J Histochem Cytochem
, vol.59
, pp. 661-672
-
-
Soe, M.J.1
Moller, T.2
Dufva, M.3
Holmstrom, K.4
-
16
-
-
24344500241
-
Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing
-
Harborth J, Elbashir SM, Vandenburgh K, Manninga H, Scaringe SA, Weber K and Tuschl T. Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing. Antisense Nucleic Acid Drug Dev 2003, 13: 83-105.
-
(2003)
Antisense Nucleic Acid Drug Dev
, vol.13
, pp. 83-105
-
-
Harborth, J.1
Elbashir, S.M.2
Vandenburgh, K.3
Manninga, H.4
Scaringe, S.A.5
Weber, K.6
Tuschl, T.7
-
17
-
-
0038385504
-
RNA interference in mammalian cells by chemically-modified RNA
-
Braasch DA, Jensen S, Liu Y, Kaur K, Arar K, White MA and Corey DR. RNA interference in mammalian cells by chemically-modified RNA. Biochemistry 2003, 42: 7967-7975.
-
(2003)
Biochemistry
, vol.42
, pp. 7967-7975
-
-
Braasch, D.A.1
Jensen, S.2
Liu, Y.3
Kaur, K.4
Arar, K.5
White, M.A.6
Corey, D.R.7
-
18
-
-
57349134691
-
Chemical modification of siRNAs for in vivo use
-
Behlke MA. Chemical modification of siRNAs for in vivo use. Oligonucleotides 2008, 18: 305-319.
-
(2008)
Oligonucleotides
, vol.18
, pp. 305-319
-
-
Behlke, M.A.1
-
19
-
-
84886040521
-
Effects of 20-O-methyl nucleotide substitution on EcoRI endonuclease cleavage activities
-
Zhao G, Zhao B, Tong Z, Mu R and Guan Y. Effects of 20-O-methyl nucleotide substitution on EcoRI endonuclease cleavage activities. PLoS ONE 2013, 8: e77111.
-
(2013)
PLoS ONE
, vol.8
, pp. e77111
-
-
Zhao, G.1
Zhao, B.2
Tong, Z.3
Mu, R.4
Guan, Y.5
-
20
-
-
79960868183
-
A ligation-triggered DNAzyme cascade for amplified fluorescence detection of biological small molecules with zero-background signal
-
Lu LM, Zhang XB, Kong RM, Yang B and Tan W. A ligation-triggered DNAzyme cascade for amplified fluorescence detection of biological small molecules with zero-background signal. J Am Chem Soc 2011, 133: 11686-11691.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 11686-11691
-
-
Lu, L.M.1
Zhang, X.B.2
Kong, R.M.3
Yang, B.4
Tan, W.5
-
21
-
-
33646852808
-
Fluorescence resonance energy transfer: Evaluation of the intracellular stability of polyplexes
-
Breunig M, Lungwitz U, Liebl R and Goepferich A. Fluorescence resonance energy transfer: evaluation of the intracellular stability of polyplexes. Eur J Pharm Biopharm 2006, 63: 156-165.
-
(2006)
Eur J Pharm Biopharm
, vol.63
, pp. 156-165
-
-
Breunig, M.1
Lungwitz, U.2
Liebl, R.3
Goepferich, A.4
-
22
-
-
0036180593
-
Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: A comparative study of ensemble and single-molecule data
-
Dietrich A, Buschmann V, Muller C and Sauer M. Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: a comparative study of ensemble and single-molecule data. J Biotechnol 2002, 82: 211-231.
-
(2002)
J Biotechnol
, vol.82
, pp. 211-231
-
-
Dietrich, A.1
Buschmann, V.2
Muller, C.3
Sauer, M.4
-
23
-
-
34248353386
-
Highly sensitive DNA detection and point mutation identification: An electrochemical approach based on the combined use of ligase and reverse molecular beacon
-
Wu ZS, Jiang JH, Shen GL and Yu RQ. Highly sensitive DNA detection and point mutation identification: an electrochemical approach based on the combined use of ligase and reverse molecular beacon. Hum Mutat 2007, 28: 630-637.
-
(2007)
Hum Mutat
, vol.28
, pp. 630-637
-
-
Wu, Z.S.1
Jiang, J.H.2
Shen, G.L.3
Yu, R.Q.4
-
24
-
-
0034529249
-
Molecular beacons: Novel fluorescent probes
-
Fang X, Li JJ, Perlette J, Tan W and Wang K. Molecular beacons: novel fluorescent probes. Anal Chem 2000, 72: 747A-753A.
-
(2000)
Anal Chem
, vol.72
, pp. 747A-753A
-
-
Fang, X.1
Li, J.J.2
Perlette, J.3
Tan, W.4
Wang, K.5
-
25
-
-
3843054927
-
Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells
-
Nitin N, Santangelo PJ, Kim G, Nie S and Bao G. Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells. Nucleic Acids Res 2004, 32: e58.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. e58
-
-
Nitin, N.1
Santangelo, P.J.2
Kim, G.3
Nie, S.4
Bao, G.5
-
26
-
-
26444596631
-
Real-time investigation of nucleic acids phosphorylation process using molecular beacons
-
Tang Z, Wang K, Tan W, Ma C, Li J, Liu L and Guo Q, et al. Real-time investigation of nucleic acids phosphorylation process using molecular beacons. Nucleic Acids Res 2005, 33: e97.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. e97
-
-
Tang, Z.1
Wang, K.2
Tan, W.3
Ma, C.4
Li, J.5
Liu, L.6
Guo, Q.7
-
27
-
-
79954627142
-
MicroRNA profiling by simultaneous selective isotachophoresis and hybridization with molecular beacons
-
Persat A and Santiago JG. MicroRNA profiling by simultaneous selective isotachophoresis and hybridization with molecular beacons. Anal Chem 2011, 83: 2310-2316.
-
(2011)
Anal Chem
, vol.83
, pp. 2310-2316
-
-
Persat, A.1
Santiago, J.G.2
-
28
-
-
15244353779
-
Using molecular beacon to monitor activity of E. Coli DNA ligase
-
Liu L, Tang Z, Wang K, Tan W, Li J, Guo Q and Meng X, et al. Using molecular beacon to monitor activity of E. coli DNA ligase. Analyst 2005, 130: 350-357.
-
(2005)
Analyst
, vol.130
, pp. 350-357
-
-
Liu, L.1
Tang, Z.2
Wang, K.3
Tan, W.4
Li, J.5
Guo, Q.6
Meng, X.7
-
29
-
-
75749100164
-
Detection of T4 DNA ligase using a solid-state electrochemiluminescence biosensing switch based on ferrocene-labeled molecular beacon
-
Wang X, Dong P, Yun W, Xu Y, He P and Fang Y. Detection of T4 DNA ligase using a solid-state electrochemiluminescence biosensing switch based on ferrocene-labeled molecular beacon. Talanta 2010, 80: 1643-1647.
-
(2010)
Talanta
, vol.80
, pp. 1643-1647
-
-
Wang, X.1
Dong, P.2
Yun, W.3
Xu, Y.4
He, P.5
Fang, Y.6
-
30
-
-
4644239154
-
Real-time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons
-
Tang Z, Wang K, Tan W, Li J, Liu L, Guo Q and Meng X, et al. Real-time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons. Nucleic Acids Res 2003, 31: e148.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. e148
-
-
Tang, Z.1
Wang, K.2
Tan, W.3
Li, J.4
Liu, L.5
Guo, Q.6
Meng, X.7
-
31
-
-
58149517850
-
Effects of mismatches and insertions on discrimination accuracy of nucleic acid probes
-
Piao X, Sun L, Zhang T, Gan Y and Guan Y. Effects of mismatches and insertions on discrimination accuracy of nucleic acid probes. Acta Biochim Pol 2008, 55: 713-720.
-
(2008)
Acta Biochim Pol
, vol.55
, pp. 713-720
-
-
Piao, X.1
Sun, L.2
Zhang, T.3
Gan, Y.4
Guan, Y.5
-
32
-
-
84865208997
-
Kinetic analysis of DNA strand joining by Chlorella virus DNA ligase and the role of nucleotidyltransferase motif VI in ligase adenylylation
-
Samai P and Shuman S. Kinetic analysis of DNA strand joining by Chlorella virus DNA ligase and the role of nucleotidyltransferase motif VI in ligase adenylylation. J Biol Chem 2012, 287: 28609-28618.
-
(2012)
J Biol Chem
, vol.287
, pp. 28609-28618
-
-
Samai, P.1
Shuman, S.2
-
33
-
-
0030738913
-
Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases
-
Pritchard CE and Southern EM. Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases. Nucleic Acids Res 1997, 25: 3403-3407.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3403-3407
-
-
Pritchard, C.E.1
Southern, E.M.2
-
34
-
-
4344569343
-
DNA ligases ensure fidelity by interrogating minor groove contacts
-
Liu P, Burdzy A and Sowers LC. DNA ligases ensure fidelity by interrogating minor groove contacts. Nucleic Acids Res 2004, 32: 4503-4511.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4503-4511
-
-
Liu, P.1
Burdzy, A.2
Sowers, L.C.3
-
35
-
-
78049513811
-
Efficient assembly of very short oligonucleotides using T4 DNA Ligase
-
Horspool DR, Coope RJ and Holt RA. Efficient assembly of very short oligonucleotides using T4 DNA Ligase. BMC Res Notes 2010, 3: 291.
-
(2010)
BMC Res Notes
, vol.3
, pp. 291
-
-
Horspool, D.R.1
Coope, R.J.2
Holt, R.A.3
-
36
-
-
33747177904
-
Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4
-
Bullard DR and Bowater RP. Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4. Biochem J 2006, 398: 135-144.
-
(2006)
Biochem J
, vol.398
, pp. 135-144
-
-
Bullard, D.R.1
Bowater, R.P.2
-
37
-
-
84864340201
-
Effect of LNA- and OMeN-modified oligonucleotide probes on the stability and discrimination of mismatched base pairs of duplexes
-
Yan Y, Yan J, Piao X, Zhang T and Guan Y. Effect of LNA- and OMeN-modified oligonucleotide probes on the stability and discrimination of mismatched base pairs of duplexes. J Biosci 2012, 37: 233-241.
-
(2012)
J Biosci
, vol.37
, pp. 233-241
-
-
Yan, Y.1
Yan, J.2
Piao, X.3
Zhang, T.4
Guan, Y.5
-
38
-
-
78649909547
-
Evaluation of enzyme kinetic parameters using explicit analytic approximations to the solution of the Michaelis-Menten equation
-
Golicnik M. Evaluation of enzyme kinetic parameters using explicit analytic approximations to the solution of the Michaelis-Menten equation. Biochem Eng J 2011, 53: 234-238.
-
(2011)
Biochem Eng J
, vol.53
, pp. 234-238
-
-
Golicnik, M.1
-
39
-
-
0024559478
-
Specificity of the nick-closing activity of bacteriophage T4 DNA ligase
-
Wu DY andWallace RB. Specificity of the nick-closing activity of bacteriophage T4 DNA ligase. Gene 1989, 76:245-254.
-
(1989)
Gene
, vol.76
, pp. 245-254
-
-
Wu, D.Y.1
Wallace, R.B.2
-
40
-
-
0034635347
-
Nick recognition by DNA ligases
-
Doherty AJ and Dafforn TR. Nick recognition by DNA ligases. J Mol Biol 2000, 296: 43-56.
-
(2000)
J Mol Biol
, vol.296
, pp. 43-56
-
-
Doherty, A.J.1
Dafforn, T.R.2
-
41
-
-
0038578021
-
Comparison of different antisense strategies in mammalian cells using locked nucleic acids, 20-O-methyl RNA, phosphorothioates and small interfering RNA
-
Grunweller A, Wyszko E, Bieber B, Jahnel R, Erdmann VA and Kurreck J. Comparison of different antisense strategies in mammalian cells using locked nucleic acids, 20-O-methyl RNA, phosphorothioates and small interfering RNA. Nucleic Acids Res 2003, 31: 3185-3193.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3185-3193
-
-
Grunweller, A.1
Wyszko, E.2
Bieber, B.3
Jahnel, R.4
Erdmann, V.A.5
Kurreck, J.6
-
42
-
-
0242299593
-
Kinetics and thermodynamics of nick sealing by T4 DNA ligase
-
Cherepanov AV and de Vries S. Kinetics and thermodynamics of nick sealing by T4 DNA ligase. Eur J Biochem 2003, 270: 4315-4325.
-
(2003)
Eur J Biochem
, vol.270
, pp. 4315-4325
-
-
Cherepanov, A.V.1
De Vries, S.2
-
43
-
-
34247586674
-
20-Modified oligonucleotides for antisense therapeutics
-
Prakash TP and Bhat B. 20-Modified oligonucleotides for antisense therapeutics. Curr Top Med Chem 2007, 7: 641-649.
-
(2007)
Curr Top Med Chem
, vol.7
, pp. 641-649
-
-
Prakash, T.P.1
Bhat, B.2
|