-
1
-
-
0016273515
-
DNA ligase: Structure, mechanism, function
-
Lehman, I.R. (1974) DNA ligase: structure, mechanism, function. Science 186, 790-797.
-
(1974)
Science
, vol.186
, pp. 790-797
-
-
Lehman, I.R.1
-
2
-
-
0018266028
-
T4 polynucleotide ligase catalyzed joining on triple-stranded nucleic acids
-
Raae, A.J. & Kleppe, K. (1978) T4 polynucleotide ligase catalyzed joining on triple-stranded nucleic acids. Biochemistry 17, 2939-2942.
-
(1978)
Biochemistry
, vol.17
, pp. 2939-2942
-
-
Raae, A.J.1
Kleppe, K.2
-
3
-
-
0020480166
-
Sealing of gaps in duplex DNA by T4 DNA ligase
-
Nilsson, S.V. & Magnusson, G. (1982) Sealing of gaps in duplex DNA by T4 DNA ligase. Nucleic Acids Res. 10, 1425-1437.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 1425-1437
-
-
Nilsson, S.V.1
Magnusson, G.2
-
4
-
-
0032478802
-
The action of DNA ligase at abasic sites in DNA
-
Bogenhagen, D.F. & Pinz, K.G. (1998) The action of DNA ligase at abasic sites in DNA. J. Biol. Chem. 273, 7888-7893.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 7888-7893
-
-
Bogenhagen, D.F.1
Pinz, K.G.2
-
5
-
-
0030873236
-
Functional characterization of the T4 DNA ligase: A new insight into the mechanism of action
-
Rossi, R., Montecucco, A., Ciarrocchi, G. & Biamonti, G. (1997) Functional characterization of the T4 DNA ligase: a new insight into the mechanism of action. Nucleic Acids Res. 25, 2106-2113.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2106-2113
-
-
Rossi, R.1
Montecucco, A.2
Ciarrocchi, G.3
Biamonti, G.4
-
6
-
-
0014409781
-
Enzymatic breakage and joining of deoxyribonucleic acid. VI. Further purification and properties of polynucleotide ligase from Escherichia coli infected with bacteriophage T4
-
Weiss, B., Jacquemin-Sablon, A., Live, T.R., Fareed, G.C. & Richardson, C.C. (1968) Enzymatic breakage and joining of deoxyribonucleic acid. VI. Further purification and properties of polynucleotide ligase from Escherichia coli infected with bacteriophage T4. J. Biol. Chem. 243, 4543-4555.
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 4543-4555
-
-
Weiss, B.1
Jacquemin-Sablon, A.2
Live, T.R.3
Fareed, G.C.4
Richardson, C.C.5
-
7
-
-
0014409837
-
Ezymatic breakage and joining of deoxyribonucleic acid. VII. Properties of the enzyme-adenylate intermediate in the polynucleotide ligase reaction
-
Weiss, B., Thompson, A. & Richardson, C.C. (1968) Ezymatic breakage and joining of deoxyribonucleic acid. VII. Properties of the enzyme-adenylate intermediate in the polynucleotide ligase reaction. J. Biol. Chem. 243, 4556-4563.
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 4556-4563
-
-
Weiss, B.1
Thompson, A.2
Richardson, C.C.3
-
8
-
-
0015134265
-
Structure of the DNA ligase-adenylate intermediate: Lysine (ε-amino)-linked adenosine monophosphoramidate
-
Gumport R.I. & Lehman, I.R. (1971) Structure of the DNA ligase-adenylate intermediate: lysine (ε-amino)-linked adenosine monophosphoramidate. Proc. Natl Acad. Sci. USA 68, 2559-2563.
-
(1971)
Proc. Natl Acad. Sci. USA
, vol.68
, pp. 2559-2563
-
-
Gumport, R.I.1
Lehman, I.R.2
-
9
-
-
0015239823
-
Enzymatic breakage and joining of deoxyribonucleic acid. IX. Synthesis and properties of the deoxyribonucleic acid adenylate in the phage T4 ligase reaction
-
Harvey, C.L., Gabriel, T.F., Wilt, E.M. & Richardson, C.C. (1971) Enzymatic breakage and joining of deoxyribonucleic acid. IX. Synthesis and properties of the deoxyribonucleic acid adenylate in the phage T4 ligase reaction. J. Biol. Chem. 246, 4523-4530.
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 4523-4530
-
-
Harvey, C.L.1
Gabriel, T.F.2
Wilt, E.M.3
Richardson, C.C.4
-
10
-
-
0016766914
-
Kinetics and effect of salts and polyamines on T4 polynucleotide ligase
-
Raae, A.J., Kleppe, R.K. & Kleppe, K. (1975) Kinetics and effect of salts and polyamines on T4 polynucleotide ligase. Eur J. Biochem. 60, 437-443.
-
(1975)
Eur. J. Biochem.
, vol.60
, pp. 437-443
-
-
Raae, A.J.1
Kleppe, R.K.2
Kleppe, K.3
-
11
-
-
0027318626
-
Unexpected substrate specificity of T4 DNA ligase revealed by in vitro selection
-
Harada, K. & Orgel, L.E. (1993) Unexpected substrate specificity of T4 DNA ligase revealed by in vitro selection. Nucleic Acids Res. 21, 2287-2291.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2287-2291
-
-
Harada, K.1
Orgel, L.E.2
-
12
-
-
0024559478
-
Specificity of the nick-closing activity of bacteriophage T4 DNA ligase
-
Wu, D.Y. & Wallace, R.B. (1989) Specificity of the nick-closing activity of bacteriophage T4 DNA ligase. Gene 76, 245-254.
-
(1989)
Gene
, vol.76
, pp. 245-254
-
-
Wu, D.Y.1
Wallace, R.B.2
-
13
-
-
0030738913
-
Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases
-
Pritchard, C.E. & Southern, E.M. (1997) Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases. Nucleic Acids Res. 25, 3403-3407.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3403-3407
-
-
Pritchard, C.E.1
Southern, E.M.2
-
14
-
-
0035125009
-
Joining of short DNA oligonucleotides with base pair mismatches by T4 DNA Ligase
-
Cherepanov, A., Yildirim, E. & de Vries, S. (2001) Joining of short DNA oligonucleotides with base pair mismatches by T4 DNA Ligase. J. Biochem. (Tokyo). 129, 61-68.
-
(2001)
J. Biochem. (Tokyo)
, vol.129
, pp. 61-68
-
-
Cherepanov, A.1
Yildirim, E.2
De Vries, S.3
-
15
-
-
0037563785
-
Canonical nucleosides can be utilized by T4 DNA ligase as universal template bases at ligation junctions
-
Alexander, R.C., Johnson, A.K., Thorpe, J.A., Gevedon, T. & Testa, S.M. (2003) Canonical nucleosides can be utilized by T4 DNA ligase as universal template bases at ligation junctions. Nucleic Acids Res. 31, 3208-3216.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3208-3216
-
-
Alexander, R.C.1
Johnson, A.K.2
Thorpe, J.A.3
Gevedon, T.4
Testa, S.M.5
-
16
-
-
85044703958
-
Interaction of short oligonucleotide derivatives with nucleic acids. VI. Discrimination of mismatch-containing complexes upon ligation of a short oligonucleotide tandem on DNA template
-
Pyshnyi, D.V., Krivenko, A.A., Lokhov, S.G., Ivanova, E.M., Dymshits, G.M. & Zarytova, V.F. (1998) Interaction of short oligonucleotide derivatives with nucleic acids. VI. Discrimination of mismatch-containing complexes upon ligation of a short oligonucleotide tandem on DNA template. Bioorg. Khim. 24, 32-37.
-
(1998)
Bioorg. Khim.
, vol.24
, pp. 32-37
-
-
Pyshnyi, D.V.1
Krivenko, A.A.2
Lokhov, S.G.3
Ivanova, E.M.4
Dymshits, G.M.5
Zarytova, V.F.6
-
17
-
-
85044702149
-
Interaction of short oligonucleotide derivatives with nucleic acids. V. Ligation of short oligonucleotides in tandem on a complementary DNA template
-
Pyshnyi, D.V., Krivenko, A.A., Lokhov, S.G., Ivanova, E.M., Dymshits, G.M. & Zarytova, V.F. (1998) Interaction of short oligonucleotide derivatives with nucleic acids. V. Ligation of short oligonucleotides in tandem on a complementary DNA template. Bioorg. Khim. 24, 25-31.
-
(1998)
Bioorg. Khim.
, vol.24
, pp. 25-31
-
-
Pyshnyi, D.V.1
Krivenko, A.A.2
Lokhov, S.G.3
Ivanova, E.M.4
Dymshits, G.M.5
Zarytova, V.F.6
-
18
-
-
0033605569
-
Standard free energy for the hydrolysis of adenylylated T4 DNA ligase and the apparent pKa of lysine 159
-
Arabshahi, A. & Frey, P.A. (1999) Standard free energy for the hydrolysis of adenylylated T4 DNA ligase and the apparent pKa of lysine 159. J. Biol. Chem. 274, 8586-8588.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 8586-8588
-
-
Arabshahi, A.1
Frey, P.A.2
-
19
-
-
0032555331
-
T4 DNA ligase synthesizes dinucleoside polyphosphates
-
Madrid, O., Martin, D., Atencia, E.A., Sillero, A. & Gunther Sillero, M.A. (1998) T4 DNA ligase synthesizes dinucleoside polyphosphates. FEBS Lett. 433, 283-286.
-
(1998)
FEBS Lett.
, vol.433
, pp. 283-286
-
-
Madrid, O.1
Martin, D.2
Atencia, E.A.3
Sillero, A.4
Gunther Sillero, M.A.5
-
20
-
-
0033796867
-
Synthesis of dinucleoside polyphosphates catalyzed by firefly luciferase and several ligases
-
Sillero, A. & Sillero, M.A. (2000) Synthesis of dinucleoside polyphosphates catalyzed by firefly luciferase and several ligases. Pharmacol. Ther. 87, 91-102.
-
(2000)
Pharmacol. Ther.
, vol.87
, pp. 91-102
-
-
Sillero, A.1
Sillero, M.A.2
-
21
-
-
0035204634
-
Binding of nucleotides by T4 DNA ligase and RNA ligase: Optical absorbance and fluorescence studies
-
Cherepanov, A.V. & de Vries, S. (2001) Binding of nucleotides by T4 DNA ligase and RNA ligase: optical absorbance and fluorescence studies. Biophys. J. 81, 3545-3559.
-
(2001)
Biophys. J.
, vol.81
, pp. 3545-3559
-
-
Cherepanov, A.V.1
De Vries, S.2
-
22
-
-
0036451168
-
Dynamic mechanism of nick recognition by DNA ligase
-
Cherepanov, A.V. & de Vries, S. (2002) Dynamic mechanism of nick recognition by DNA ligase. Eur. J. Biochem. 269, 5993-5999.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 5993-5999
-
-
Cherepanov, A.V.1
De Vries, S.2
-
23
-
-
0036330503
-
Scanning mutagenesis using T4 DNA ligase and short degenerate DNA oligonucleotides containing tri-nucleotide mismatches
-
Cherepanov, A.V. & de Vries, S. (2002) Scanning mutagenesis using T4 DNA ligase and short degenerate DNA oligonucleotides containing tri-nucleotide mismatches. J. Biochem. (Tokyo) 132, 143-147.
-
(2002)
J. Biochem. (Tokyo)
, vol.132
, pp. 143-147
-
-
Cherepanov, A.V.1
De Vries, S.2
-
24
-
-
0037126846
-
2+-dependent nucleotidyl transfer catalyzed by T4 DNA and RNA ligases
-
2+-dependent nucleotidyl transfer catalyzed by T4 DNA and RNA ligases. J. Biol. Chem. 277, 1695-1704.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 1695-1704
-
-
Cherepanov, A.V.1
De Vries, S.2
-
25
-
-
0015408606
-
Purification and properties of bacteriophage T4-induced RNA ligase
-
Silber, R., Malathi, V.G. & Hurwitz, J. (1972) Purification and properties of bacteriophage T4-induced RNA ligase. Proc. Natl Acad. Sci. USA 69, 3009-3013.
-
(1972)
Proc. Natl Acad. Sci. USA
, vol.69
, pp. 3009-3013
-
-
Silber, R.1
Malathi, V.G.2
Hurwitz, J.3
-
26
-
-
0034635347
-
Nick recognition by DNA ligases
-
Doherty, A.J. & Dafforn, T.R. (2000) Nick recognition by DNA ligases. J. Mol. Biol. 296, 43-56.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 43-56
-
-
Doherty, A.J.1
Dafforn, T.R.2
-
27
-
-
0034327406
-
Structural and mechanistic conservation in DNA ligases
-
Doherty, A.J. & Suh, S.W. (2000) Structural and mechanistic conservation in DNA ligases. Nucleic Acids Res. 28, 4051-4058.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4051-4058
-
-
Doherty, A.J.1
Suh, S.W.2
-
28
-
-
0003320265
-
Structure and mechanism in protein science
-
W.H. Freeman, New York
-
Fersht, A. (1999) Structure and mechanism in protein science. In A Guide to Enzyme Catalysis and Protein Folding, p. 3. W.H. Freeman, New York.
-
(1999)
A Guide to Enzyme Catalysis and Protein Folding
, pp. 3
-
-
Fersht, A.1
-
29
-
-
0022422692
-
Influence of monovalent cations on the activity of T4 DNA ligase in the presence of polyethylene glycol
-
Hayashi, K., Nakazawa, M., Ishizaki, Y. & Obayashi, A. (1985) Influence of monovalent cations on the activity of T4 DNA ligase in the presence of polyethylene glycol. Nucleic Acids Res. 13, 3261-3271.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 3261-3271
-
-
Hayashi, K.1
Nakazawa, M.2
Ishizaki, Y.3
Obayashi, A.4
-
30
-
-
0033080784
-
Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D
-
Tong, J., Cao, W. & Barany, F. (1999) Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D. Nucleic Acids Res. 27, 788-794.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 788-794
-
-
Tong, J.1
Cao, W.2
Barany, F.3
-
31
-
-
0035378247
-
Molecular cloning and characterization of thermostable DNA ligase from Aquifex pyrophilus, a hyperthermophilic bacterium
-
Lim, J.H., Choi, J., Han, S.J., Kim, S.H., Hwang, H.Z., Jin, D.K., Ahn, B.Y. & Han, Y.S. (2001) Molecular cloning and characterization of thermostable DNA ligase from Aquifex pyrophilus, a hyperthermophilic bacterium. Extremophiles 5, 161-168.
-
(2001)
Extremophiles
, vol.5
, pp. 161-168
-
-
Lim, J.H.1
Choi, J.2
Han, S.J.3
Kim, S.H.4
Hwang, H.Z.5
Jin, D.K.6
Ahn, B.Y.7
Han, Y.S.8
-
32
-
-
0017134355
-
Transcriptional control of T4 coliphage-specific genes 30, 42, 43, RIIA, RIIB, and e
-
Witmer, H., Baros, A., Forbes, J., Padnos, D., Maricondia, W. & Weiner, M. (1976) Transcriptional control of T4 coliphage-specific genes 30, 42, 43, RIIA, RIIB, and e. J. Gen. Virol. 31, 289-302.
-
(1976)
J. Gen. Virol.
, vol.31
, pp. 289-302
-
-
Witmer, H.1
Baros, A.2
Forbes, J.3
Padnos, D.4
Maricondia, W.5
Weiner, M.6
-
33
-
-
0028143584
-
Physiological concentrations of purines and pyrimidines
-
Traut, T.W. (1994) Physiological concentrations of purines and pyrimidines. Mol. Cell. Biochem. 140, 1-22.
-
(1994)
Mol. Cell. Biochem.
, vol.140
, pp. 1-22
-
-
Traut, T.W.1
-
34
-
-
0000086141
-
Phylogeny of mRNA capping enzymes
-
Wang, S.P., Deng, L., Ho, C.K. & Shuman, S. (1997) Phylogeny of mRNA capping enzymes. Proc. Natl Acad. Sci. USA 94, 9573-9578.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 9573-9578
-
-
Wang, S.P.1
Deng, L.2
Ho, C.K.3
Shuman, S.4
-
35
-
-
0029056990
-
RNA capping enzyme and DNA ligase: A superfamily of covalent nucleotidyl transferases
-
Shuman, S. & Schwer, B. (1995) RNA capping enzyme and DNA ligase: a superfamily of covalent nucleotidyl transferases. Mol. Microbiol. 17, 405-410.
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 405-410
-
-
Shuman, S.1
Schwer, B.2
-
36
-
-
0032077454
-
Accelerated mRNA decay in conditional mutants of yeast mRNA capping enzyme
-
Schwer, B., Mao, X. & Shuman, S. (1998) Accelerated mRNA decay in conditional mutants of yeast mRNA capping enzyme. Nucleic Acids Res. 26, 2050-2057.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2050-2057
-
-
Schwer, B.1
Mao, X.2
Shuman, S.3
-
37
-
-
0017224213
-
Capping of eucaryotic mRNAs
-
Shatkin, A.J. (1976) Capping of eucaryotic mRNAs. Cell 9, 645-653.
-
(1976)
Cell
, vol.9
, pp. 645-653
-
-
Shatkin, A.J.1
-
38
-
-
0015526379
-
3-, ADP, and CDP
-
3-, ADP, and CDP. J. Am. Chem. Soc. 94, 9198-9204.
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 9198-9204
-
-
Frey, C.M.1
Banyasz, J.L.2
Stuehr, J.E.3
-
39
-
-
0001569132
-
Determination of the interaction of deoxyribonucleate and magnesium ions by means of a metal ion indicator
-
Shack, J. & Bynum, B.S. (1959) Determination of the interaction of deoxyribonucleate and magnesium ions by means of a metal ion indicator. Nature (London) 184, 635-636.
-
(1959)
Nature (London)
, vol.184
, pp. 635-636
-
-
Shack, J.1
Bynum, B.S.2
-
40
-
-
0242309051
-
Studies on the structure of nucleic acids. V. On the mechanism of metal enzyme interactions
-
Cavalieri, L.F. (1951) Studies on the structure of nucleic acids. V. On the mechanism of metal enzyme interactions. J. Am. Chem. Soc. 74, 1242-1247.
-
(1951)
J. Am. Chem. Soc.
, vol.74
, pp. 1242-1247
-
-
Cavalieri, L.F.1
|