-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH, (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D 66: 213-221
-
(2010)
Acta Crystallogr D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
2
-
-
84887258278
-
Two DHH subfamily 1 proteins in Streptococcus pneumoniae possess cyclic di-AMP phosphodiesterase activity and affect bacterial growth and virulence
-
Bai Y, Yang J, Eisele LE, Underwood AJ, Koestler BJ, Waters CM, Metzger DW, Bai G, (2013) Two DHH subfamily 1 proteins in Streptococcus pneumoniae possess cyclic di-AMP phosphodiesterase activity and affect bacterial growth and virulence. J Bacteriol 195: 5123-5132
-
(2013)
J Bacteriol
, vol.195
, pp. 5123-5132
-
-
Bai, Y.1
Yang, J.2
Eisele, L.E.3
Underwood, A.J.4
Koestler, B.J.5
Waters, C.M.6
Metzger, D.W.7
Bai, G.8
-
3
-
-
84892404829
-
Cyclic di-AMP impairs potassium uptake mediated by a cyclic di-AMP binding protein in Streptococcus pneumoniae
-
Bai Y, Yang J, Zarrella TM, Zhang Y, Metzger DW, Bai G, (2014) Cyclic di-AMP impairs potassium uptake mediated by a cyclic di-AMP binding protein in Streptococcus pneumoniae. J Bacteriol 196: 614-623
-
(2014)
J Bacteriol
, vol.196
, pp. 614-623
-
-
Bai, Y.1
Yang, J.2
Zarrella, T.M.3
Zhang, Y.4
Metzger, D.W.5
Bai, G.6
-
4
-
-
77149165421
-
Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis
-
Baird NJ, Ferré-D'Amaré AR, (2010) Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis. RNA 16: 598-609
-
(2010)
RNA
, vol.16
, pp. 598-609
-
-
Baird, N.J.1
Ferré-D'Amaré, A.R.2
-
5
-
-
77955500520
-
Riboswitch function: Flipping the switch or tuning the dimmer?
-
Baird NJ, Kulshina N, Ferré-D'Amaré AR, (2010) Riboswitch function: flipping the switch or tuning the dimmer? RNA Biol 7: 328-332
-
(2010)
RNA Biol
, vol.7
, pp. 328-332
-
-
Baird, N.J.1
Kulshina, N.2
Ferré-D'Amaré, A.R.3
-
6
-
-
84872517135
-
Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches
-
Baird NJ, Ferré-D'Amaré AR, (2013) Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches. RNA 19: 167-176
-
(2013)
RNA
, vol.19
, pp. 167-176
-
-
Baird, N.J.1
Ferré-D'Amaré, A.R.2
-
7
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RL, Gomelsky M, Schlichting I, (2009) Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature 459: 1015-1018
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.1
Hartmann, E.2
Griese, J.J.3
Beitlich, T.4
Kirienko, N.V.5
Ryjenkov, D.A.6
Reinstein, J.7
Shoeman, R.L.8
Gomelsky, M.9
Schlichting, I.10
-
8
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR, (2004) New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc Natl Acad Sci USA 101: 6421-6426
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6421-6426
-
-
Barrick, J.E.1
Corbino, K.A.2
Winkler, W.C.3
Nahvi, A.4
Mandal, M.5
Collins, J.6
Lee, M.7
Roth, A.8
Sudarsan, N.9
Jona, I.10
Wickiser, J.K.11
Breaker, R.R.12
-
9
-
-
77955290032
-
Evidence for widespread gene control function by the ydaO riboswitch candidate
-
Block KF, Hammond MC, Breaker RR, (2010) Evidence for widespread gene control function by the ydaO riboswitch candidate. J Bacteriol 192: 3983-3989
-
(2010)
J Bacteriol
, vol.192
, pp. 3983-3989
-
-
Block, K.F.1
Hammond, M.C.2
Breaker, R.R.3
-
10
-
-
84870208079
-
Second messenger regulation of biofilm formation: Breakthroughs in understanding c-di-GMP effector systems
-
Boyd CD, O'Toole GA, (2012) Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systems. Annu Rev Cell Devel Biol 28: 439-462
-
(2012)
Annu Rev Cell Devel Biol
, vol.28
, pp. 439-462
-
-
Boyd, C.D.1
O'Toole, G.A.2
-
12
-
-
80054966913
-
STING is a direct innate immune sensor of cyclic di-GMP
-
Burdette DL, Monroe KM, Sotelo-Troha K, Iwig JS, Eckert B, Hyodo M, Hayakawa Y, Vance RE, (2011) STING is a direct innate immune sensor of cyclic di-GMP. Nature 478: 515-518
-
(2011)
Nature
, vol.478
, pp. 515-518
-
-
Burdette, D.L.1
Monroe, K.M.2
Sotelo-Troha, K.3
Iwig, J.S.4
Eckert, B.5
Hyodo, M.6
Hayakawa, Y.7
Vance, R.E.8
-
13
-
-
84871218439
-
STING and the innate immune response to nucleic acids in the cytosol
-
Burdette DL, Vance RE, (2013) STING and the innate immune response to nucleic acids in the cytosol. Nature Immunol 14: 19-26
-
(2013)
Nature Immunol
, vol.14
, pp. 19-26
-
-
Burdette, D.L.1
Vance, R.E.2
-
14
-
-
79953052076
-
Structural basis of cooperative ligand binding by the glycine riboswitch
-
Butler EB, Xiong Y, Wang J, Strobel SA, (2011) Structural basis of cooperative ligand binding by the glycine riboswitch. Chem Biol 18: 293-298
-
(2011)
Chem Biol
, vol.18
, pp. 293-298
-
-
Butler, E.B.1
Xiong, Y.2
Wang, J.3
Strobel, S.A.4
-
15
-
-
84899131835
-
The cGAS-cGAMP-STING pathway of cytosolic DNA sensing and signaling
-
Cai X, Chiu YH, Chen ZJ, (2014) The cGAS-cGAMP-STING pathway of cytosolic DNA sensing and signaling. Mol Cell 54: 289-296
-
(2014)
Mol Cell
, vol.54
, pp. 289-296
-
-
Cai, X.1
Chiu, Y.H.2
Chen, Z.J.3
-
16
-
-
0029820625
-
Crystal structure of a group i ribozyme domain: Principles of RNA packing
-
Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JA, (1996) Crystal structure of a group I ribozyme domain: principles of RNA packing. Science 273: 1678-1685
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
17
-
-
84878454210
-
Systematic identification of conserved bacterial c-di-AMP receptor proteins
-
Corrigan RM, Campeotto I, Jeganathan T, Roelofs KG, Lee VT, Grundling A, (2013) Systematic identification of conserved bacterial c-di-AMP receptor proteins. Proc Natl Acad Sci USA 110: 9084-9089
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 9084-9089
-
-
Corrigan, R.M.1
Campeotto, I.2
Jeganathan, T.3
Roelofs, K.G.4
Lee, V.T.5
Grundling, A.6
-
18
-
-
84880508942
-
Cyclic di-AMP: Another second messenger enters the fray
-
Corrigan RM, Grundling A, (2013) Cyclic di-AMP: another second messenger enters the fray. Nat Rev Microbiol 11: 513-524
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 513-524
-
-
Corrigan, R.M.1
Grundling, A.2
-
19
-
-
80053041142
-
Riboswitches: Discovery of drugs that target bacterial gene-regulatory RNAs
-
Deigan KE, Ferré-D'Amaré AR, (2011) Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs. Acc Chem Res 44: 1329-1338
-
(2011)
Acc Chem Res
, vol.44
, pp. 1329-1338
-
-
Deigan, K.E.1
Ferré-D'Amaré, A.R.2
-
20
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K, (2004) Coot: model-building tools for molecular graphics. Acta Crstallogr D 60: 2126-2132
-
(2004)
Acta Crstallogr D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
21
-
-
0029919746
-
Use of cis- and trans-ribozymes to remove 5and 3heterogeneities from milligrams of in vitro transcribed RNA
-
Ferré-D'Amaré AR, Doudna JA, (1996) Use of cis- and trans-ribozymes to remove 5and 3heterogeneities from milligrams of in vitro transcribed RNA. Nucleic Acid Res 24: 977-978
-
(1996)
Nucleic Acid Res
, vol.24
, pp. 977-978
-
-
Ferré-D'Amaré, A.R.1
Doudna, J.A.2
-
22
-
-
0034695419
-
Crystallization and structure determination of a hepatitis delta virus ribozyme: Use of the RNA-binding protein U1A as a crystallization module
-
Ferré-D'Amaré AR, Doudna JA, (2000) Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module. J Mol Biol 295: 541-556
-
(2000)
J Mol Biol
, vol.295
, pp. 541-556
-
-
Ferré-D'Amaré, A.R.1
Doudna, J.A.2
-
23
-
-
77957111493
-
Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs
-
Ferré-D'Amaré AR, (2010) Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs. Methods 52: 159-167
-
(2010)
Methods
, vol.52
, pp. 159-167
-
-
Ferré-D'Amaré, A.R.1
-
24
-
-
84906311591
-
Structural insights into recognition of c-di-AMP by the ydaO riboswitch
-
Gao A, Serganov A, (2014) Structural insights into recognition of c-di-AMP by the ydaO riboswitch. Nat Chem Biol 10: 787-792
-
(2014)
Nat Chem Biol
, vol.10
, pp. 787-792
-
-
Gao, A.1
Serganov, A.2
-
25
-
-
78649986714
-
Promoting RNA helical stacking via A-minor junctions
-
Geary C, Chworos A, Jaeger L, (2011) Promoting RNA helical stacking via A-minor junctions. Nucleic Acids Res 39: 1066-1080
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1066-1080
-
-
Geary, C.1
Chworos, A.2
Jaeger, L.3
-
26
-
-
0242629052
-
Substructure search procedures for macromolecular structures
-
Grosse-Kunstleve RW, Adams PD, (2003) Substructure search procedures for macromolecular structures. Acta Crystallogr D 59: 1966-1973
-
(2003)
Acta Crystallogr D
, vol.59
, pp. 1966-1973
-
-
Grosse-Kunstleve, R.W.1
Adams, P.D.2
-
27
-
-
0032110708
-
Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation
-
Guo P, Zhang C, Chen C, Garver K, Trottier M, (1998) Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation. Mol Cell 2: 149-155
-
(1998)
Mol Cell
, vol.2
, pp. 149-155
-
-
Guo, P.1
Zhang, C.2
Chen, C.3
Garver, K.4
Trottier, M.5
-
28
-
-
78649970557
-
Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch
-
Huang L, Serganov A, Patel DJ, (2010) Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol Cell 40: 774-786
-
(2010)
Mol Cell
, vol.40
, pp. 774-786
-
-
Huang, L.1
Serganov, A.2
Patel, D.J.3
-
29
-
-
0029946537
-
Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex
-
Jiang F, Kumar RA, Jones RA, Patel DJ, (1996) Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex. Nature 382: 183-186
-
(1996)
Nature
, vol.382
, pp. 183-186
-
-
Jiang, F.1
Kumar, R.A.2
Jones, R.A.3
Patel, D.J.4
-
30
-
-
84870542263
-
Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis
-
Kalia D, Merey G, Nakayama S, Zheng Y, Zhou J, Luo Y, Guo M, Roembke BT, Sintim HO, (2013) Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis. Chem Soc Rev 42: 305-341
-
(2013)
Chem Soc Rev
, vol.42
, pp. 305-341
-
-
Kalia, D.1
Merey, G.2
Nakayama, S.3
Zheng, Y.4
Zhou, J.5
Luo, Y.6
Guo, M.7
Roembke, B.T.8
Sintim, H.O.9
-
31
-
-
0032827799
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase
-
Kao C, Zheng M, Rudisser S, (1999) A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA 5: 1268-1272
-
(1999)
RNA
, vol.5
, pp. 1268-1272
-
-
Kao, C.1
Zheng, M.2
Rudisser, S.3
-
32
-
-
84861840835
-
High-precision isothermal titration calorimetry with automated peak-shape analysis
-
Keller S, Vargas C, Zhao H, Piszczek G, Brautigam CA, Schuck P, (2012) High-precision isothermal titration calorimetry with automated peak-shape analysis. Anal Chem 84: 5066-5073
-
(2012)
Anal Chem
, vol.84
, pp. 5066-5073
-
-
Keller, S.1
Vargas, C.2
Zhao, H.3
Piszczek, G.4
Brautigam, C.A.5
Schuck, P.6
-
33
-
-
0141484613
-
PRIMUS: A windows PC-based system for small-angle scattering data analysis
-
Konarev PV, Volkov VV, Sokolova AV, Koch MHJ, Svergun DI, (2003) PRIMUS: a windows PC-based system for small-angle scattering data analysis. J Appl Cryst 36: 1277-1282
-
(2003)
J Appl Cryst
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
34
-
-
71449123530
-
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
-
Kulshina N, Baird NJ, Ferré-D'Amaré AR, (2009) Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat Struct Mol Biol 16: 1212-1217
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1212-1217
-
-
Kulshina, N.1
Baird, N.J.2
Ferré-D'Amaré, A.R.3
-
35
-
-
77955630859
-
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
-
Lee ER, Baker JL, Weinberg Z, Sudarsan N, Breaker RR, (2010) An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science 329: 845-848
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
36
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis NB, Westhof E, (2001) Geometric nomenclature and classification of RNA base pairs. RNA 7: 499-512
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
37
-
-
12344273534
-
Riboswitch structures: Purine ligands replace tertiary contacts
-
Lescoute A, Westhof E, (2005) Riboswitch structures: purine ligands replace tertiary contacts. Chem Biol 12: 10-13
-
(2005)
Chem Biol
, vol.12
, pp. 10-13
-
-
Lescoute, A.1
Westhof, E.2
-
38
-
-
29844453234
-
Topology of three-way junctions in folded RNAs
-
Lescoute A, Westhof E, (2006) Topology of three-way junctions in folded RNAs. RNA 12: 83-93
-
(2006)
RNA
, vol.12
, pp. 83-93
-
-
Lescoute, A.1
Westhof, E.2
-
39
-
-
84856048586
-
Analysis of the role of Bacillus subtilis sigma(M) in beta-lactam resistance reveals an essential role for c-di-AMP in peptidoglycan homeostasis
-
Luo Y, Helmann JD, (2012) Analysis of the role of Bacillus subtilis sigma(M) in beta-lactam resistance reveals an essential role for c-di-AMP in peptidoglycan homeostasis. Mol Microbiol 83: 623-639
-
(2012)
Mol Microbiol
, vol.83
, pp. 623-639
-
-
Luo, Y.1
Helmann, J.D.2
-
40
-
-
5044234799
-
A glycine-dependent riboswitch that uses cooperative binding to control gene expression
-
Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, Ruzzo WL, Breaker RR, (2004) A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306: 275-279
-
(2004)
Science
, vol.306
, pp. 275-279
-
-
Mandal, M.1
Lee, M.2
Barrick, J.E.3
Weinberg, Z.4
Emilsson, G.M.5
Ruzzo, W.L.6
Breaker, R.R.7
-
41
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ, (2007) Phaser crystallographic software. J Appl Cryst 40: 658-674
-
(2007)
J Appl Cryst
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
42
-
-
84872738066
-
Cyclic di-AMP homeostasis in Bacillus subtilis: Both lack and high level accumulation of the nucleotide are detrimental for cell growth
-
Mehne FM, Gunka K, Eilers H, Herzberg C, Kaever V, Stulke J, (2013) Cyclic di-AMP homeostasis in Bacillus subtilis: both lack and high level accumulation of the nucleotide are detrimental for cell growth. J Biol Chem 288: 2004-2017
-
(2013)
J Biol Chem
, vol.288
, pp. 2004-2017
-
-
Mehne, F.M.1
Gunka, K.2
Eilers, H.3
Herzberg, C.4
Kaever, V.5
Stulke, J.6
-
43
-
-
0031749733
-
Structure of the dimer initiation complex of HIV-1 genomic RNA
-
Mujeeb A, Clever JL, Billeci TM, James TL, Parslow TG, (1998) Structure of the dimer initiation complex of HIV-1 genomic RNA. Nat Struct Biol 5: 432-436
-
(1998)
Nat Struct Biol
, vol.5
, pp. 432-436
-
-
Mujeeb, A.1
Clever, J.L.2
Billeci, T.M.3
James, T.L.4
Parslow, T.G.5
-
44
-
-
84887997976
-
Riboswitches in eubacteria sense the second messenger c-di-AMP
-
Nelson JW, Sudarsan N, Furukawa K, Weinberg Z, Wang JX, Breaker RR, (2013) Riboswitches in eubacteria sense the second messenger c-di-AMP. Nat Chem Biol 9: 834-839
-
(2013)
Nat Chem Biol
, vol.9
, pp. 834-839
-
-
Nelson, J.W.1
Sudarsan, N.2
Furukawa, K.3
Weinberg, Z.4
Wang, J.X.5
Breaker, R.R.6
-
45
-
-
0035942248
-
RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
-
Nissen P, Ippolito JA, Ban N, Moore PB, Steitz TA, (2001) RNA tertiary interactions in the large ribosomal subunit: the A-minor motif. Proc Natl Acad Sci USA 98: 4899-4903
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4899-4903
-
-
Nissen, P.1
Ippolito, J.A.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
46
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W, (1997) Processing of X-ray diffraction data collected in oscillation mode. Meth Enzymol 276: 307-326
-
(1997)
Meth Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
47
-
-
0028004607
-
Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
-
Oubridge C, Ito N, Evans PR, Teo CH, Nagai K, (1994) Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372: 432-438
-
(1994)
Nature
, vol.372
, pp. 432-438
-
-
Oubridge, C.1
Ito, N.2
Evans, P.R.3
Teo, C.H.4
Nagai, K.5
-
49
-
-
84908063090
-
Themes and variations in riboswitch structure and function
-
Peselis A, Serganov A, (2014) Themes and variations in riboswitch structure and function. Biochim Biophys Acta 1839: 908-918
-
(2014)
Biochim Biophys Acta
, vol.1839
, pp. 908-918
-
-
Peselis, A.1
Serganov, A.2
-
50
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
-
Putnam CD, Hammel M, Hura GL, Tainer JA, (2007) X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution. Q Rev Biophys 40: 191-285
-
(2007)
Q Rev Biophys
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
51
-
-
84906313473
-
C-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets
-
Ren A, Patel DJ, (2014) c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets. Nat Chem Biol 10: 780-786
-
(2014)
Nat Chem Biol
, vol.10
, pp. 780-786
-
-
Ren, A.1
Patel, D.J.2
-
52
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer T, Jenal U, (2009) Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol 7: 724-735
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
54
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling
-
Schuck P, (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys J 78: 1606-1619
-
(2000)
Biophys J
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
55
-
-
62249156218
-
Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch
-
Serganov A, Huang L, Patel DJ, (2009) Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch. Nature 458: 233-237
-
(2009)
Nature
, vol.458
, pp. 233-237
-
-
Serganov, A.1
Huang, L.2
Patel, D.J.3
-
56
-
-
84863717085
-
Crystal structures of STING protein reveal basis for recognition of cyclic di-GMP
-
Shang G, Zhu D, Li N, Zhang J, Zhu C, Lu D, Liu C, Yu Q, Zhao Y, Xu S, Gu L, (2012) Crystal structures of STING protein reveal basis for recognition of cyclic di-GMP. Nat Struct Mol Biol 19: 725-727
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 725-727
-
-
Shang, G.1
Zhu, D.2
Li, N.3
Zhang, J.4
Zhu, C.5
Lu, D.6
Liu, C.7
Yu, Q.8
Zhao, Y.9
Xu, S.10
Gu, L.11
-
57
-
-
84863726252
-
Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system
-
Shu C, Yi G, Watts T, Kao CC, Li P, (2012) Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system. Nat Struct Mol Biol 19: 722-724
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 722-724
-
-
Shu, C.1
Yi, G.2
Watts, T.3
Kao, C.C.4
Li, P.5
-
58
-
-
71449108155
-
Structural basis of ligand binding by a c-di-GMP riboswitch
-
Smith KD, Lipchock SV, Ames TD, Wang J, Breaker RR, Strobel SA, (2009) Structural basis of ligand binding by a c-di-GMP riboswitch. Nat Struct Mol Biol 16: 1218-1223
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1218-1223
-
-
Smith, K.D.1
Lipchock, S.V.2
Ames, T.D.3
Wang, J.4
Breaker, R.R.5
Strobel, S.A.6
-
59
-
-
79956338019
-
Structural basis of differential ligand recognition by two classes of bis-(3-5)-cyclic dimeric guanosine monophosphate-binding riboswitches
-
Smith KD, Shanahan CA, Moore EL, Simon AC, Strobel SA, (2011) Structural basis of differential ligand recognition by two classes of bis-(3-5)-cyclic dimeric guanosine monophosphate-binding riboswitches. Proc Natl Acad Sci USA 108: 7757-7762
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7757-7762
-
-
Smith, K.D.1
Shanahan, C.A.2
Moore, E.L.3
Simon, A.C.4
Strobel, S.A.5
-
60
-
-
79953178284
-
Interactions of the c-di-GMP riboswitch with its second messenger ligand
-
Smith KD, Strobel SA, (2011) Interactions of the c-di-GMP riboswitch with its second messenger ligand. Biochem Soc Trans 39: 647-651
-
(2011)
Biochem Soc Trans
, vol.39
, pp. 647-651
-
-
Smith, K.D.1
Strobel, S.A.2
-
61
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
-
Sudarsan N, Lee ER, Weinberg Z, Moy RH, Kim JN, Link KH, Breaker RR, (2008) Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321: 411-413
-
(2008)
Science
, vol.321
, pp. 411-413
-
-
Sudarsan, N.1
Lee, E.R.2
Weinberg, Z.3
Moy, R.H.4
Kim, J.N.5
Link, K.H.6
Breaker, R.R.7
-
62
-
-
84896790464
-
Inherent regulation of EAL domain-catalyzed hydrolysis of second messenger cyclic di-GMP
-
Sundriyal A, Massa C, Samoray D, Zehender F, Sharpe T, Jenal U, Schirmer T, (2014) Inherent regulation of EAL domain-catalyzed hydrolysis of second messenger cyclic di-GMP. J Biol Chem 289: 6978-6990
-
(2014)
J Biol Chem
, vol.289
, pp. 6978-6990
-
-
Sundriyal, A.1
Massa, C.2
Samoray, D.3
Zehender, F.4
Sharpe, T.5
Jenal, U.6
Schirmer, T.7
-
63
-
-
0033896691
-
Maximum-likelihood density modification
-
Terwilliger TC, (2000) Maximum-likelihood density modification. Acta Crystallogr D 56: 965-972
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
64
-
-
84870310480
-
The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis
-
Watson PY, Fedor MJ, (2012) The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis. Nat Chem Biol 8: 963-965
-
(2012)
Nat Chem Biol
, vol.8
, pp. 963-965
-
-
Watson, P.Y.1
Fedor, M.J.2
-
65
-
-
43049087389
-
Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates
-
Witte G, Hartung S, Buttner K, Hopfner KP, (2008) Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates. Mol Cell 30: 167-178
-
(2008)
Mol Cell
, vol.30
, pp. 167-178
-
-
Witte, G.1
Hartung, S.2
Buttner, K.3
Hopfner, K.P.4
-
66
-
-
84862109207
-
Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding
-
Wood S, Ferré-D'Amaré AR, Rueda D, (2012) Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding. ACS Chem Biol 7: 920-927
-
(2012)
ACS Chem Biol
, vol.7
, pp. 920-927
-
-
Wood, S.1
Ferré-D'Amaré, A.R.2
Rueda, D.3
-
67
-
-
77954070545
-
C-di-AMP secreted by intracellular Listeria monocytogenes activates a host type i interferon response
-
Woodward JJ, Iavarone AT, Portnoy DA, (2010) c-di-AMP secreted by intracellular Listeria monocytogenes activates a host type I interferon response. Science 328: 1703-1705
-
(2010)
Science
, vol.328
, pp. 1703-1705
-
-
Woodward, J.J.1
Iavarone, A.T.2
Portnoy, D.A.3
-
68
-
-
53649104514
-
Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch
-
Xiao H, Edwards TE, Ferré-D'Amaré AR, (2008) Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch. Chem Biol 15: 1125-1137
-
(2008)
Chem Biol
, vol.15
, pp. 1125-1137
-
-
Xiao, H.1
Edwards, T.E.2
Ferré-D'Amaré, A.R.3
-
69
-
-
84862996389
-
Cyclic di-GMP sensing via the innate immune signaling protein STING
-
Yin Q, Tian Y, Kabaleeswaran V, Jiang X, Tu D, Eck MJ, Chen ZJ, Wu H, (2012) Cyclic di-GMP sensing via the innate immune signaling protein STING. Mol Cell 46: 735-745
-
(2012)
Mol Cell
, vol.46
, pp. 735-745
-
-
Yin, Q.1
Tian, Y.2
Kabaleeswaran, V.3
Jiang, X.4
Tu, D.5
Eck, M.J.6
Chen, Z.J.7
Wu, H.8
-
70
-
-
84908321643
-
Global analysis of riboswitches by small-angle X-ray scattering and calorimetry
-
Zhang J, Jones CP, Ferré-D'Amaré AR, (2014) Global analysis of riboswitches by small-angle X-ray scattering and calorimetry. Biochim Biophys Acta 1839: 1020-1029
-
(2014)
Biochim Biophys Acta
, vol.1839
, pp. 1020-1029
-
-
Zhang, J.1
Jones, C.P.2
Ferré-D'Amaré, A.R.3
|