-
1
-
-
60349085695
-
Riboswitches: Ancient and promising genetic regulators
-
Blouin, S., Mulhbacher, J., Penedo, J. C., and Lafontaine, D. A. (2009) Riboswitches: ancient and promising genetic regulators ChemBioChem 10, 400-416
-
(2009)
ChemBioChem
, vol.10
, pp. 400-416
-
-
Blouin, S.1
Mulhbacher, J.2
Penedo, J.C.3
Lafontaine, D.A.4
-
2
-
-
34347401399
-
Riboswitches: small-molecule recognition by gene regulatory RNAs
-
DOI 10.1016/j.sbi.2007.05.004, PII S0959440X07000693, Nucleic acids / Sequences and topology
-
Edwards, T. E., Klein, D. J., and Ferré-D'Amaré, A. R. (2007) Riboswitches: small-molecule recognition by gene regulatory RNAs Curr. Opin. Struct. Biol. 17, 273-279 (Pubitemid 47021358)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.3
, pp. 273-279
-
-
Edwards, T.E.1
Klein, D.J.2
Ferre-D'Amare, A.R.3
-
3
-
-
80052982281
-
The dynamic nature of RNA as key to understanding riboswitch mechanisms
-
Haller, A., Souliere, M. F., and Micura, R. (2011) The dynamic nature of RNA as key to understanding riboswitch mechanisms Acc. Chem. Res. 44, 1339-1348
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1339-1348
-
-
Haller, A.1
Souliere, M.F.2
Micura, R.3
-
4
-
-
48249104039
-
Riboswitches: Emerging themes in RNA structure and function
-
Montange, R. K. and Batey, R. T. (2008) Riboswitches: emerging themes in RNA structure and function Annu. Rev. Biophys. 37, 117-133
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 117-133
-
-
Montange, R.K.1
Batey, R.T.2
-
5
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
Nahvi, A., Sudarsan, N., Ebert, M. S., Zou, X., Brown, K. L., and Breaker, R. R. (2002) Genetic control by a metabolite binding mRNA Chem. Biol. 9, 1043
-
(2002)
Chem. Biol.
, vol.9
, pp. 1043
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
6
-
-
67650713931
-
The structural and functional diversity of metabolite-binding riboswitches
-
Roth, A. and Breaker, R. R. (2009) The structural and functional diversity of metabolite-binding riboswitches Annu. Rev. Biochem. 78, 305-334
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
7
-
-
85011936076
-
Riboswitch RNAs: Regulation of gene expression by direct monitoring of a physiological signal
-
Smith, A. M., Fuchs, R. T., Grundy, F. J., and Henkin, T. M. (2010) Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal RNA Biol. 7, 104-110
-
(2010)
RNA Biol.
, vol.7
, pp. 104-110
-
-
Smith, A.M.1
Fuchs, R.T.2
Grundy, F.J.3
Henkin, T.M.4
-
8
-
-
78049276834
-
Ribozymes and riboswitches: Modulation of RNA function by small molecules
-
Zhang, J., Lau, M. W., and Ferré-D'Amaré, A. R. (2010) Ribozymes and riboswitches: modulation of RNA function by small molecules Biochemistry 49, 9123-9131
-
(2010)
Biochemistry
, vol.49
, pp. 9123-9131
-
-
Zhang, J.1
Lau, M.W.2
Ferré-D'Amaré, A.R.3
-
9
-
-
79951676664
-
The glmS ribozyme: Use of a small molecule coenzyme by a gene-regulatory RNA
-
Ferré-D'Amaré, A. R. (2010) The glmS ribozyme: use of a small molecule coenzyme by a gene-regulatory RNA Q. Rev. Biophys. 43, 423-447
-
(2010)
Q. Rev. Biophys.
, vol.43
, pp. 423-447
-
-
Ferré D'Amaré, A.R.1
-
10
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
DOI 10.1038/nature02362
-
Winkler, W. C., Nahvi, A., Roth, A., Collins, J. A., and Breaker, R. R. (2004) Control of gene expression by a natural metabolite-responsive ribozyme Nature 428, 281-286 (Pubitemid 38418792)
-
(2004)
Nature
, vol.428
, Issue.6980
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
11
-
-
77149165421
-
Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis
-
Baird, N. J. and Ferré-D'Amaré, A. R. (2010) Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis RNA 16, 598-609
-
(2010)
RNA
, vol.16
, pp. 598-609
-
-
Baird, N.J.1
Ferré-D'Amaré, A.R.2
-
12
-
-
77955500520
-
Riboswitch function: Flipping the switch or tuning the dimmer?
-
Baird, N. J., Kulshina, N., and Ferré-D'Amaré, A. R. (2010) Riboswitch function: flipping the switch or tuning the dimmer? RNA Biol. 7, 328-332
-
(2010)
RNA Biol.
, vol.7
, pp. 328-332
-
-
Baird, N.J.1
Kulshina, N.2
Ferré-D'Amaré, A.R.3
-
13
-
-
63049137897
-
Principles of c-di-GMP signalling in bacteria
-
Hengge, R. (2009) Principles of c-di-GMP signalling in bacteria Nat. Rev. Microbiol. 7, 263-273
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 263-273
-
-
Hengge, R.1
-
14
-
-
33845403359
-
Mechanisms of cyclic-di-GMP signaling in bacteria
-
DOI 10.1146/annurev.genet.40.110405.090423
-
Jenal, U. and Malone, J. (2006) Mechanisms of cyclic-di-GMP signaling in bacteria Annu. Rev. Genet. 40, 385-407 (Pubitemid 44956791)
-
(2006)
Annual Review of Genetics
, vol.40
, pp. 385-407
-
-
Jenal, U.1
Malone, J.2
-
15
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer, T. and Jenal, U. (2009) Structural and mechanistic determinants of c-di-GMP signalling Nat. Rev. Microbiol. 7, 724-735
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
16
-
-
35848951876
-
Roles of cyclic diguanylate in the regulation of bacterial pathogenesis
-
DOI 10.1146/annurev.micro.61.080706.093426
-
Tamayo, R., Pratt, J. T., and Camilli, A. (2007) Roles of cyclic diguanylate in the regulation of bacterial pathogenesis Annu. Rev. Microbiol. 61, 131-148 (Pubitemid 350058203)
-
(2007)
Annual Review of Microbiology
, vol.61
, pp. 131-148
-
-
Tamayo, R.1
Pratt, J.T.2
Camilli, A.3
-
17
-
-
77955630859
-
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
-
Lee, E. R., Baker, J. L., Weinberg, Z., Sudarsan, N., and Breaker, R. R. (2010) An allosteric self-splicing ribozyme triggered by a bacterial second messenger Science 329, 845-848
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
18
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic Di-GMP
-
DOI 10.1126/science.1159519
-
Sudarsan, N., Lee, E. R., Weinberg, Z., Moy, R. H., Kim, J. N., Link, K. H., and Breaker, R. R. (2008) Riboswitches in eubacteria sense the second messenger cyclic di-GMP Science 321, 411-413 (Pubitemid 352029978)
-
(2008)
Science
, vol.321
, Issue.5887
, pp. 411-413
-
-
Sudarsan, N.1
Lee, E.R.2
Weinberg, Z.3
Moy, R.H.4
Kim, J.N.5
Link, K.H.6
Breaker, R.R.7
-
19
-
-
34547873145
-
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
-
DOI 10.1093/nar/gkm487
-
Weinberg, Z., Barrick, J. E., Yao, Z., Roth, A., Kim, J. N., Gore, J., Wang, J. X., Lee, E. R., Block, K. F., Sudarsan, N., Neph, S., Tompa, M., Ruzzo, W. L., and Breaker, R. R. (2007) Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Nucleic Acids Res. 35, 4809-4819 (Pubitemid 47250352)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.14
, pp. 4809-4819
-
-
Weinberg, Z.1
Barrick, J.E.2
Yao, Z.3
Roth, A.4
Kim, J.N.5
Gore, J.6
Wang, J.X.7
Lee, E.R.8
Block, K.F.9
Sudarsan, N.10
Neph, S.11
Tompa, M.12
Ruzzo, W.L.13
Breaker, R.R.14
-
20
-
-
71449123530
-
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
-
Kulshina, N., Baird, N. J., and Ferré-D'Amaré, A. R. (2009) Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch Nat. Struct. Mol. Biol. 16, 1212-1217
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1212-1217
-
-
Kulshina, N.1
Baird, N.J.2
Ferré-D'Amaré, A.R.3
-
21
-
-
71449108155
-
Structural basis of ligand binding by a c-di-GMP riboswitch
-
Smith, K. D., Lipchock, S. V., Ames, T. D., Wang, J., Breaker, R. R., and Strobel, S. A. (2009) Structural basis of ligand binding by a c-di-GMP riboswitch Nat. Struct. Mol. Biol. 16, 1218-1223
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1218-1223
-
-
Smith, K.D.1
Lipchock, S.V.2
Ames, T.D.3
Wang, J.4
Breaker, R.R.5
Strobel, S.A.6
-
22
-
-
77952896659
-
Compact intermediates in RNA folding
-
Woodson, S. A. (2010) Compact intermediates in RNA folding Annu. Rev. Biophys. 39, 61-77
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 61-77
-
-
Woodson, S.A.1
-
23
-
-
38649085954
-
Tertiary interactions determine the accuracy of RNA folding
-
DOI 10.1021/ja076166i
-
Chauhan, S. and Woodson, S. A. (2008) Tertiary interactions determine the accuracy of RNA folding J. Am. Chem. Soc. 130, 1296-1303 (Pubitemid 351171008)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.4
, pp. 1296-1303
-
-
Chauhan, S.1
Woodson, S.A.2
-
24
-
-
57549098252
-
Exploring RNA folding one molecule at a time
-
Aleman, E. A., Lamichhane, R., and Rueda, D. (2008) Exploring RNA folding one molecule at a time Curr. Opin. Chem. Biol. 12, 647-654
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 647-654
-
-
Aleman, E.A.1
Lamichhane, R.2
Rueda, D.3
-
25
-
-
77749304812
-
Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine
-
Brenner, M. D., Scanlan, M. S., Nahas, M. K., Ha, T., and Silverman, S. K. (2010) Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine Biochemistry 49, 1596-1605
-
(2010)
Biochemistry
, vol.49
, pp. 1596-1605
-
-
Brenner, M.D.1
Scanlan, M.S.2
Nahas, M.K.3
Ha, T.4
Silverman, S.K.5
-
26
-
-
79956072525
-
Conformational capture of the SAM-II riboswitch
-
Haller, A., Rieder, U., Aigner, M., Blanchard, S. C., and Micura, R. (2011) Conformational capture of the SAM-II riboswitch Nat. Chem. Biol. 7, 393-400
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 393-400
-
-
Haller, A.1
Rieder, U.2
Aigner, M.3
Blanchard, S.C.4
Micura, R.5
-
27
-
-
79956101942
-
Molecular insights into the ligand-controlled organization of the SAM-I riboswitch
-
Heppell, B., Blouin, S., Dussault, A. M., Mulhbacher, J., Ennifar, E., Penedo, J. C., and Lafontaine, D. A. (2011) Molecular insights into the ligand-controlled organization of the SAM-I riboswitch Nat. Chem. Biol. 7, 384-392
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 384-392
-
-
Heppell, B.1
Blouin, S.2
Dussault, A.M.3
Mulhbacher, J.4
Ennifar, E.5
Penedo, J.C.6
Lafontaine, D.A.7
-
28
-
-
33747345020
-
Folding of the Adenine Riboswitch
-
DOI 10.1016/j.chembiol.2006.06.010, PII S1074552106002201
-
Lemay, J. F., Penedo, J. C., Tremblay, R., Lilley, D. M., and Lafontaine, D. A. (2006) Folding of the adenine riboswitch Chem. Biol. 13, 857-868 (Pubitemid 44247776)
-
(2006)
Chemistry and Biology
, vol.13
, Issue.8
, pp. 857-868
-
-
Lemay, J.-F.1
Penedo, J.C.2
Tremblay, R.3
Lilley, D.M.J.4
Lafontaine, DanielA.5
-
29
-
-
70349281455
-
RNA folding dynamics by single-molecule fluorescence resonance energy transfer
-
Zhao, R. and Rueda, D. (2009) RNA folding dynamics by single-molecule fluorescence resonance energy transfer Methods 49, 112-117
-
(2009)
Methods
, vol.49
, pp. 112-117
-
-
Zhao, R.1
Rueda, D.2
-
30
-
-
43049087389
-
Structural Biochemistry of a Bacterial Checkpoint Protein Reveals Diadenylate Cyclase Activity Regulated by DNA Recombination Intermediates
-
DOI 10.1016/j.molcel.2008.02.020, PII S1097276508001664
-
Witte, G., Hartung, S., Buttner, K., and Hopfner, K. P. (2008) Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates Mol. Cell 30, 167-178 (Pubitemid 351626681)
-
(2008)
Molecular Cell
, vol.30
, Issue.2
, pp. 167-178
-
-
Witte, G.1
Hartung, S.2
Buttner, K.3
Hopfner, K.-P.4
-
31
-
-
0034641612
-
2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering
-
2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering Biochemistry 39, 11107-11113
-
(2000)
Biochemistry
, vol.39
, pp. 11107-11113
-
-
Fang, X.1
Littrell, K.2
Yang, X.J.3
Henderson, S.J.4
Siefert, S.5
Thiyagarajan, P.6
Pan, T.7
Sosnick, T.R.8
-
32
-
-
70349786532
-
Metal ion dependence of cooperative collapse transitions in RNA
-
Moghaddam, S., Caliskan, G., Chauhan, S., Hyeon, C., Briber, R. M., Thirumalai, D., and Woodson, S. A. (2009) Metal ion dependence of cooperative collapse transitions in RNA J. Mol. Biol. 393, 753-764
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 753-764
-
-
Moghaddam, S.1
Caliskan, G.2
Chauhan, S.3
Hyeon, C.4
Briber, R.M.5
Thirumalai, D.6
Woodson, S.A.7
-
33
-
-
0034100560
-
Small angle X-ray scattering reveals a compact intermediate in RNA folding
-
DOI 10.1038/75132
-
Russell, R., Millett, I. S., Doniach, S., and Herschlag, D. (2000) Small angle X-ray scattering reveals a compact intermediate in RNA folding Nat. Struct. Biol. 7, 367-370 (Pubitemid 30249997)
-
(2000)
Nature Structural Biology
, vol.7
, Issue.5
, pp. 367-370
-
-
Russell, R.1
Millett, I.S.2
Doniach, S.3
Herschlag, D.4
-
35
-
-
0037452797
-
Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme
-
DOI 10.1073/pnas.0337743100
-
Rangan, P., Masquida, B., Westhof, E., and Woodson, S. A. (2003) Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme Proc. Natl. Acad. Sci. U.S.A. 100, 1574-1579 (Pubitemid 36254489)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.4
, pp. 1574-1579
-
-
Rangan, P.1
Masquida, B.2
Westhof, E.3
Woodson, S.A.4
-
36
-
-
1242274330
-
A guide to ions and RNA structure
-
DOI 10.1261/rna.5205404
-
Draper, D. E. (2004) A guide to ions and RNA structure RNA 10, 335-343 (Pubitemid 38240993)
-
(2004)
RNA
, vol.10
, Issue.3
, pp. 335-343
-
-
Draper, D.E.1
-
37
-
-
77956021842
-
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch
-
Smith, K. D., Lipchock, S. V., Livingston, A. L., Shanahan, C. A., and Strobel, S. A. (2010) Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch Biochemistry 49, 7351-7359
-
(2010)
Biochemistry
, vol.49
, pp. 7351-7359
-
-
Smith, K.D.1
Lipchock, S.V.2
Livingston, A.L.3
Shanahan, C.A.4
Strobel, S.A.5
-
38
-
-
9244225713
-
Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
-
DOI 10.1038/nature03037
-
Batey, R. T., Gilbert, S. D., and Montange, R. K. (2004) Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine Nature 432, 411-415 (Pubitemid 39551677)
-
(2004)
Nature
, vol.432
, Issue.7015
, pp. 411-415
-
-
Batey, R.T.1
Gilbert, S.D.2
Montange, R.K.3
-
39
-
-
10644250950
-
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs
-
DOI 10.1016/j.chembiol.2004.11.018, PII S1074552104003436
-
Serganov, A., Yuan, Y. R., Pikovskaya, O., Polonskaia, A., Malinina, L., Phan, A. T., Hobartner, C., Micura, R., Breaker, R. R., and Patel, D. J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs Chem. Biol. 11, 1729-1741 (Pubitemid 39651306)
-
(2004)
Chemistry and Biology
, vol.11
, Issue.12
, pp. 1729-1741
-
-
Serganov, A.1
Yuan, Y.-R.2
Pikovskaya, O.3
Polonskaia, A.4
Malinina, L.5
Phan, A.T.6
Hobartner, C.7
Micura, R.8
Breaker, R.R.9
Patel, D.J.10
-
40
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
DOI 10.1126/science.1151298
-
Greenleaf, W. J., Frieda, K. L., Foster, D. A., Woodside, M. T., and Block, S. M. (2008) Direct observation of hierarchical folding in single riboswitch aptamers Science 319, 630-633 (Pubitemid 351197067)
-
(2008)
Science
, vol.319
, Issue.5863
, pp. 630-633
-
-
Greenleaf, W.J.1
Frieda, K.L.2
Foster, D.A.N.3
Woodside, M.T.4
Block, S.M.5
-
41
-
-
80053216036
-
Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism
-
Neupane, K., Yu, H., Foster, D. A. N., Wang, F., and Woodside, M. T. (2011) Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism Nucleic Acids Res. 39, 7677-7687
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7677-7687
-
-
Neupane, K.1
Yu, H.2
Foster, D.A.N.3
Wang, F.4
Woodside, M.T.5
-
42
-
-
79960991166
-
Constitutive regulatory activity of an evolutionarily excluded riboswitch variant
-
Tremblay, R., Lemay, J. F., Blouin, S., Mulhbacher, J., Bonneau, E., Legault, P., Dupont, P., Penedo, J. C., and Lafontaine, D. A. (2011) Constitutive regulatory activity of an evolutionarily excluded riboswitch variant J. Biol. Chem. 286, 27406-27415
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 27406-27415
-
-
Tremblay, R.1
Lemay, J.F.2
Blouin, S.3
Mulhbacher, J.4
Bonneau, E.5
Legault, P.6
Dupont, P.7
Penedo, J.C.8
Lafontaine, D.A.9
-
43
-
-
0031576334
-
Folding of RNA involves parallel pathways
-
DOI 10.1006/jmbi.1997.1311
-
Pan, J., Thirumalai, D., and Woodson, S. A. (1997) Folding of RNA involves parallel pathways J. Mol. Biol. 273, 7-13 (Pubitemid 27460208)
-
(1997)
Journal of Molecular Biology
, vol.273
, Issue.1
, pp. 7-13
-
-
Pan, J.1
Thirumalai, D.2
Woodson, S.A.3
-
44
-
-
23744470902
-
Single-molecule RNA folding
-
DOI 10.1021/ar040142o
-
Bokinsky, G. and Zhuang, X. (2005) Single-molecule RNA folding Acc. Chem. Res. 38, 566-573 (Pubitemid 41128409)
-
(2005)
Accounts of Chemical Research
, vol.38
, Issue.7
, pp. 566-573
-
-
Bokinsky, G.1
Zhuang, X.2
-
45
-
-
58149083620
-
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
-
Ditzler, M. A., Rueda, D., Mo, J., Håkansson, K., and Walter, N. G. (2008) A rugged free energy landscape separates multiple functional RNA folds throughout denaturation Nucleic Acids Res. 36, 7088-7099
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 7088-7099
-
-
Ditzler, M.A.1
Rueda, D.2
Mo, J.3
Håkansson, K.4
Walter, N.G.5
-
46
-
-
7544225920
-
Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic
-
Okumus, B., Wilson, T. J., Lilley, D. M. J., and Ha, T. (2004) Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic Biophys. J. 87, 2798-2806
-
(2004)
Biophys. J.
, vol.87
, pp. 2798-2806
-
-
Okumus, B.1
Wilson, T.J.2
Lilley, D.M.J.3
Ha, T.4
-
47
-
-
0034674420
-
A single-molecule study of RNA catalysis and folding
-
DOI 10.1126/science.288.5473.2048
-
Zhuang, X., Bartley, L. E., Babcock, H. P., Russell, R., Ha, T., Herschlag, D., and Chu, S. (2000) A single-molecule study of RNA catalysis and folding Science 288, 2048-2051 (Pubitemid 30397686)
-
(2000)
Science
, vol.288
, Issue.5473
, pp. 2048-2051
-
-
Zhuang, X.1
Bartley, L.E.2
Babcock, H.P.3
Russell, R.4
Ha, T.5
Herschlag, D.6
Chu, S.7
-
48
-
-
74649084566
-
The ligand-free state of the TPP riboswitch: A partially folded RNA structure
-
Ali, M., Lipfert, J., Seifert, S., Herschlag, D., and Doniach, S. (2010) The ligand-free state of the TPP riboswitch: a partially folded RNA structure J. Mol. Biol. 396, 153-165
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 153-165
-
-
Ali, M.1
Lipfert, J.2
Seifert, S.3
Herschlag, D.4
Doniach, S.5
-
49
-
-
33845971464
-
Structural Transitions and Thermodynamics of a Glycine-Dependent Riboswitch from Vibrio cholerae
-
DOI 10.1016/j.jmb.2006.10.022, PII S002228360601360X
-
Lipfert, J., Das, R., Chu, V. B., Kudaravalli, M., Boyd, N., Herschlag, D., and Doniach, S. (2007) Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae J. Mol. Biol. 365, 1393-1406 (Pubitemid 46048825)
-
(2007)
Journal of Molecular Biology
, vol.365
, Issue.5
, pp. 1393-1406
-
-
Lipfert, J.1
Das, R.2
Chu, V.B.3
Kudaravalli, M.4
Boyd, N.5
Herschlag, D.6
Doniach, S.7
-
50
-
-
75649088957
-
Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch
-
Kulshina, N., Edwards, T. E., and Ferré-D'Amaré, A. R. (2010) Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch RNA 16, 186-196
-
(2010)
RNA
, vol.16
, pp. 186-196
-
-
Kulshina, N.1
Edwards, T.E.2
Ferré-D'Amaré, A.R.3
-
51
-
-
34548761368
-
Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach
-
DOI 10.1093/nar/gkm580
-
Lang, K., Rieder, R., and Micura, R. (2007) Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach Nucleic Acids Res. 35, 5370-5378 (Pubitemid 47423911)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.16
, pp. 5370-5378
-
-
Lang, K.1
Rieder, R.2
Micura, R.3
-
52
-
-
34548547136
-
Fluorescent energy transfer readout of an aptazyme-based biosensor
-
Rueda, D. and Walter, N. G. (2006) Fluorescent energy transfer readout of an aptazyme-based biosensor Methods Mol. Biol. 335, 289-310
-
(2006)
Methods Mol. Biol.
, vol.335
, pp. 289-310
-
-
Rueda, D.1
Walter, N.G.2
|