Strain prioritization for natural product discovery by a high-throughput real-time PCR Method

Journal of Natural Products

Volumn 77, Issue 10, 2014, Pages 2296-2303

  Hindra, ^a   Huang, Tingting ^a   Yang, Dong ^a   Rudolf, Jeffrey D ^a   Xie, Pengfei ^a   Xie, Guangbo ^a   Teng, Qihui ^a   Lohman, Jeremy R ^a   Zhu, Xiangcheng ^c,d   Huang, Yong ^c   Zhao, Li Xing ^e   Jiang, Yi ^e   Duan, Yanwen ^c,d   Shen, Ben ^a,b  

^a Department of Chemistry ^*  (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c CENTRAL SOUTH UNIVERSITY   (China)

^d Hunan Engineering Research Center of Combinatorial Biosynthesis and Natural Product Drug Discovery   (China)

^e YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; DITERPENOID; NATURAL PRODUCT; OXALOTERPIN; PLATENCIN; PLATENSIMYCIN; UNCLASSIFIED DRUG; VIGUIEPINOL; ADAMANTANE; AMINOBENZOIC ACID DERIVATIVE; AMINOPHENOL DERIVATIVE; ANILIDE; BIOLOGICAL PRODUCT; MOLECULAR LIBRARY; POLYCYCLIC HYDROCARBON;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; CONTROLLED STUDY; GENE CLUSTER; GENE SEQUENCE; GENE TARGETING; MICROBIOLOGICAL EXAMINATION; NONHUMAN; REAL TIME POLYMERASE CHAIN REACTION; STRAIN PRIORITIZATION; CHEMICAL STRUCTURE; CHEMISTRY; MOLECULAR LIBRARY;

ACTINOBACTERIA; ADAMANTANE; AMINOBENZOATES; AMINOPHENOLS; ANILIDES; BIOLOGICAL PRODUCTS; MOLECULAR STRUCTURE; POLYCYCLIC COMPOUNDS; REAL-TIME POLYMERASE CHAIN REACTION; SMALL MOLECULE LIBRARIES;

EID: 84908403152     PISSN: 01633864     EISSN: 15206025     Source Type: Journal    
DOI: 10.1021/np5006168     Document Type: Article

References (32)

1. Newman, D. J.; Cragg, G. M. J. Nat. Prod. 2012, 75, 311-335
2. Li, J. W.-H.; Vederas, J. C. Science 2009, 325, 161-165
3. Wang, J.; Soisson, S. M.; Young, K.; Shoop, W.; Kodali, S.; Galgoci, A.; Painter, R.; Parthasarathy, G.; Tang, Y. S.; Cummings, R.; Ha, S.; Dorso, K.; Motyl, M.; Jayasuriya, H.; Ondeyka, J.; Herath, K.; Zhang, C.; Hernandez, L.; Allocco, J.; Basilio, A.; Tormo, J. R.; Genilloud, O.; Vicente, F.; Pelaez, F.; Colwell, L.; Lee, S. H.; Michael, B.; Felcetto, T.; Gill, C.; Silver, L. L.; Hermes, J. D.; Bartizal, K.; Barrett, J.; Schmatz, D.; Becker, J. W.; Cully, D.; Singh, S. B. Nature 2006, 441, 358-361
4. Jayasuriya, H.; Herath, K. B.; Zhang, C.; Zink, D. L.; Basilio, A.; Genilloud, O.; Diez, M. T.; Vicente, F.; Gonzalez, I.; Salazar, O.; Pelaez, F.; Cummings, R.; Ha, S.; Wang, J.; Singh, S. B. Angew. Chem., Int. Ed. 2007, 46, 4684-4688
5. Wang, J.; Kodali, S.; Lee, S. H.; Galgoci, A.; Painter, R.; Dorso, K.; Racine, F.; Motyl, M.; Hernandez, L.; Tinney, E.; Colletti, S. L.; Herath, K.; Cummings, R.; Salazar, O.; Gonzalez, I.; Basilio, A.; Vicente, F.; Genilloud, O.; Pelaez, F.; Jayasuriya, H.; Young, K.; Cully, D. F.; Singh, S. B. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 7612-7616
6. Singh, S. B.; Jayasuriya, H.; Ondeyka, J. G.; Herath, K. B.; Zhang, C.; Zink, D. L.; Tsou, N. N.; Ball, R. G.; Basilio, A.; Genilloud, O.; Diez, M. T.; Vicente, F.; Pelaez, F.; Young, K.; Wang, J. J. Am. Chem. Soc. 2006, 128, 11916-11920
7. Young, K.; Jayasuriya, H.; Ondeyka, J. G.; Herath, K.; Zhang, C.; Kodali, S.; Galgoci, A.; Painter, R.; Brown-Driver, V.; Yamamoto, R.; Silver, L. L.; Zheng, Y.; Ventura, J. I.; Sigmund, J.; Ha, S.; Basilio, A.; Vicente, F.; Tormo, J. R.; Pelaez, F.; Youngman, P.; Cully, D.; Barrett, J. F.; Schmatz, D.; Singh, S. B.; Wang, J. Antimicrob. Agents Chemother. 2006, 50, 519-526
8. Genilloud, O.; Gonzalez, I.; Salazar, O.; Martin, J.; Tormo, J. R.; Vicente, F. J. Ind. Microbiol. Biotechnol. 2011, 38, 375-389
9. Walsh, C. T.; Fischbach, M. A. J. Am. Chem. Soc. 2010, 132, 2469-2493
10. Bachmann, B. O.; Van Lanen, S. G.; Baltz, R. H. J. Ind. Microbiol. Biotechnol. 2014, 41, 175-184
11. Funabashi, M.; Baba, S.; Takatsu, T.; Kizuka, M.; Ohata, Y.; Tanaka, M.; Nonaka, K.; Spork, A. P.; Ducho, C.; Chen, W.-C. L.; Van Lanen, S. G. Angew. Chem., Int. Ed. 2013, 52, 11607-11611
12. Owen, J. G.; Reddy, B. V. B.; Ternei, M. A.; Charlop-Powers, Z.; Calle, P. Y.; Kim, J. H.; Brady, S. F. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 11797-11802
13. Xie, P.; Ma, M.; Rateb, M. E.; Shaaban, K. A.; Yu, Z.; Huang, S.-X.; Zhao, L.-X.; Zhu, X.; Yan, Y.; Peterson, R. M.; Lohman, J. R.; Yang, D.; Yin, M.; Rudolf, J. D.; Jiang, Y.; Duan, Y.; Shen, B. J. Nat. Prod. 2014, 77, 377-387
14. Valasek, M. A.; Repa, J. J. Adv. Physiol. Educ. 2005, 29, 151-159
15. VanGuilder, H. D.; Vrana, K. E.; Freeman, W. M. BioTechniques 2008, 44, 619-626
16. Wilhelm, J.; Pingoud, A. ChemBioChem 2003, 4, 1120-1128
17. Wetmur, J. G. Crit. Rev. Biochem. Mol. Biol. 1991, 26, 227-259
18. Smanski, M. J.; Peterson, R. M.; Huang, S.-X.; Shen, B. Curr. Opin. Chem. Biol. 2012, 16, 132-141
19. Smanski, M. J.; Yu, Z.; Casper, J.; Lin, S.; Peterson, R. M.; Chen, Y.; Wendt-Pienkowski, E.; Rajski, S. R.; Shen, B. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 13498-13503
20. Ikeda, C.; Hayashi, Y.; Itoh, N.; Seto, H.; Dairi, T. J. Biochem. 2007, 141, 37-45
21. Guo, Y.; Zheng, W.; Rong, X.; Huang, Y. Int. J. Syst. Evol. Microbiol. 2008, 58, 149-159
22. Labeda, D. P. Streptomyces Int. J. Syst. Evol. Microbiol. 2011, 61, 2525-2531
23. Smanski, M. J.; Peterson, R. M.; Rajski, S. R.; Shen, B. Antimicrob. Agents Chemother. 2009, 53, 1299-1304
24. Yu, Z.; Smanski, M. J.; Peterson, R. M.; Marchillo, K.; Andes, D.; Rajski, S. R.; Shen, B. Org. Lett. 2010, 12, 1744-1747
25. Kieser, T.; Bibb, M. J.; Buttner, M. J.; Chater, K. F.; Hopwood, D. A. Practical Streptomyces Genetics; The John Innes Foundation: Norwich, UK, 2000.
26. Leggate, J.; Allain, R.; Isaac, L.; Blais, B. W. Biotechnol. Lett. 2006, 28, 1587-1594
27. Kibbe, W. A. Nucleic Acids Res. 2007, 35 (Suppl 2) W43-W46
28. Breslauer, K. J.; Frank, R.; Bloecker, H.; Marky, L. A. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 3746-3750
29. Sugimoto, N.; Nakano, S.; Yoneyama, M.; Honda, K. Nucleic Acids Res. 1996, 24, 4501-4505
30. Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. Mol. Biol. Evol. 2011, 28, 2731-2739
31. Gust, B.; Challis, G. L.; Fowler, K.; Kieser, T.; Chater, K. F. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1541-1546
32. Bierman, M.; Logan, R.; OBrien, K.; Seno, E. T.; Rao, R. N.; Schoner, B. E. Gene 1992, 116, 43-49