-
1
-
-
80054953179
-
Schistosomiasis
-
Brown, M. Schistosomiasis Clin. Med. 2011, 11, 479-482
-
(2011)
Clin. Med.
, vol.11
, pp. 479-482
-
-
Brown, M.1
-
2
-
-
0037129443
-
Schistosomiasis
-
Ross, A. G.; Bartley, P. B.; Sleigh, A. C.; Olds, G. R.; Li, Y.; Williams, G. M.; McManus, D. P. Schistosomiasis N. Engl. J. Med. 2002, 346, 1212-1220
-
(2002)
N. Engl. J. Med.
, vol.346
, pp. 1212-1220
-
-
Ross, A.G.1
Bartley, P.B.2
Sleigh, A.C.3
Olds, G.R.4
Li, Y.5
Williams, G.M.6
McManus, D.P.7
-
4
-
-
77956418613
-
Praziquantel and Schistosomiasis
-
Dömling, A.; Khoury, K. Praziquantel and Schistosomiasis ChemMedChem. 2010, 5, 1420-1434
-
(2010)
ChemMedChem.
, vol.5
, pp. 1420-1434
-
-
Dömling, A.1
Khoury, K.2
-
5
-
-
0033033093
-
Resistance to praziquantel: Direct evidence from Schistosoma mansoni isolated from Egyptian villagers
-
Ismail, M.; Botros, S.; Metwally, A.; William, S.; Farghally, A.; Tao, L. F.; Day, T. A.; Bennett, J. L. Resistance to praziquantel: direct evidence from Schistosoma mansoni isolated from Egyptian villagers Am. J. Trop. Med. Hyg. 1999, 60, 932-5
-
(1999)
Am. J. Trop. Med. Hyg.
, vol.60
, pp. 932-5
-
-
Ismail, M.1
Botros, S.2
Metwally, A.3
William, S.4
Farghally, A.5
Tao, L.F.6
Day, T.A.7
Bennett, J.L.8
-
6
-
-
0036758608
-
Resistance of Schistosoma mansoni to praziquantel: Is there a problem?
-
Doenhoff, M. J.; Kusel, J. R.; Coles, G. C.; Cioli, D. Resistance of Schistosoma mansoni to praziquantel: is there a problem? Trans. R. Soc. Trop. Med. Hyg. 2002, 96, 465-469
-
(2002)
Trans. R. Soc. Trop. Med. Hyg.
, vol.96
, pp. 465-469
-
-
Doenhoff, M.J.1
Kusel, J.R.2
Coles, G.C.3
Cioli, D.4
-
7
-
-
57049129327
-
Praziquantel: Mechanisms of action, resistance and new derivatives for schistosomiasis
-
Doenhoff, M. J.; Cioli, D.; Utzinger, J. Praziquantel: mechanisms of action, resistance and new derivatives for schistosomiasis Curr. Opin. Infect. Dis. 2008, 21, 659-67
-
(2008)
Curr. Opin. Infect. Dis.
, vol.21
, pp. 659-67
-
-
Doenhoff, M.J.1
Cioli, D.2
Utzinger, J.3
-
8
-
-
79551616739
-
Genetic consequences of mass human chemotherapy for Schistosoma mansoni: Population structure pre- and post-praziquantel treatment in Tanzania
-
Norton, A. J.; Gower, C. M.; Lamberton, P. H.; Webster, B. L.; Lwambo, N. J.; Blair, L.; Fenwick, A.; Webster, J. P. Genetic consequences of mass human chemotherapy for Schistosoma mansoni: population structure pre- and post-praziquantel treatment in Tanzania Am. J. Trop. Med. Hyg. 2010, 83, 951-7
-
(2010)
Am. J. Trop. Med. Hyg.
, vol.83
, pp. 951-7
-
-
Norton, A.J.1
Gower, C.M.2
Lamberton, P.H.3
Webster, B.L.4
Lwambo, N.J.5
Blair, L.6
Fenwick, A.7
Webster, J.P.8
-
9
-
-
77955283075
-
"Manifesto" for advancing the control and elimination of neglected tropical diseases
-
Hotez, P. J.; Pecoul, B. "Manifesto" for advancing the control and elimination of neglected tropical diseases PLoS Negl. Trop. Dis. 2010, 4, e718
-
(2010)
PLoS Negl. Trop. Dis.
, vol.4
, pp. 718
-
-
Hotez, P.J.1
Pecoul, B.2
-
10
-
-
0033569641
-
Epigenetics: Regulation through repression
-
Wolffe, A. P.; Matzke, M. A. Epigenetics: regulation through repression Science 1999, 286, 481-486
-
(1999)
Science
, vol.286
, pp. 481-486
-
-
Wolffe, A.P.1
Matzke, M.A.2
-
11
-
-
20344392202
-
Epigenetics - An epicenter of gene regulation: Histones and histone-modifying enzymes
-
Biel, M.; Wascholowski, V.; Giannis, A. Epigenetics-an epicenter of gene regulation: histones and histone-modifying enzymes Angew. Chem., Int. Ed. Engl. 2005, 44, 3186-3216
-
(2005)
Angew. Chem., Int. Ed. Engl.
, vol.44
, pp. 3186-3216
-
-
Biel, M.1
Wascholowski, V.2
Giannis, A.3
-
12
-
-
23844514827
-
Chromatin modifications as targets for new anticancer drugs
-
Schaefer, S.; Jung, M. Chromatin modifications as targets for new anticancer drugs Arch. Pharm. (Weinheim) 2005, 338, 347-357
-
(2005)
Arch. Pharm. (Weinheim)
, vol.338
, pp. 347-357
-
-
Schaefer, S.1
Jung, M.2
-
13
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B. D.; Allis, C. D. The language of covalent histone modifications Nature 2000, 403, 41-5
-
(2000)
Nature
, vol.403
, pp. 41-5
-
-
Strahl, B.D.1
Allis, C.D.2
-
14
-
-
84867542415
-
Targeting schistosome histone modifying enzymes for drug development
-
Pierce, R. J.; Dubois-Abdesselem, F.; Lancelot, J.; Andrade, L.; Oliveira, G. Targeting schistosome histone modifying enzymes for drug development Curr. Pharm. Des. 2012, 18, 3567-78
-
(2012)
Curr. Pharm. Des.
, vol.18
, pp. 3567-78
-
-
Pierce, R.J.1
Dubois-Abdesselem, F.2
Lancelot, J.3
Andrade, L.4
Oliveira, G.5
-
15
-
-
84855443033
-
HDAC inhibitors in parasitic diseases
-
Andrews, K. T.; Haque, A.; Jones, M. K. HDAC inhibitors in parasitic diseases Immunol. Cell Biol. 2012, 90, 66-77
-
(2012)
Immunol. Cell Biol.
, vol.90
, pp. 66-77
-
-
Andrews, K.T.1
Haque, A.2
Jones, M.K.3
-
16
-
-
33746812188
-
Histone Deacetylase Enzymes as Potential targets in cancer and parasitic disease
-
Ouaissi, M.; Ouaissi, A. Histone Deacetylase Enzymes as Potential targets in cancer and parasitic disease J. Biomed. Biotechnol. 2006, 2, 1-10
-
(2006)
J. Biomed. Biotechnol.
, vol.2
, pp. 1-10
-
-
Ouaissi, M.1
Ouaissi, A.2
-
17
-
-
0030798245
-
Histone acetylation in chromatin structure and transcription
-
Grunstein, M. Histone acetylation in chromatin structure and transcription Nature 1997, 389, 349-352
-
(1997)
Nature
, vol.389
, pp. 349-352
-
-
Grunstein, M.1
-
18
-
-
79251566746
-
Physical and functional HAT/HADC interplay regulates protein acetylation balance
-
Peserico, A.; Simone, C. Physical and functional HAT/HADC interplay regulates protein acetylation balance J. Biomed. Biotechnol. 2011, 371832
-
(2011)
J. Biomed. Biotechnol.
, pp. 371832
-
-
Peserico, A.1
Simone, C.2
-
19
-
-
39749127166
-
The Rpd3/Hda1 family of lysine deacetylases: From bacteria and yeast to mice and men
-
Yang, X. J.; Seto, E. The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men Nat. Rev. Mol. Cell Biol. 2008, 9, 206-218
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 206-218
-
-
Yang, X.J.1
Seto, E.2
-
20
-
-
2942564591
-
Sirtuins: Sir2-related NAD-dependent protein deacetylases
-
North, B. J.; Verdin, E. Sirtuins: Sir2-related NAD-dependent protein deacetylases Genome Biol. 2004, 5, 224
-
(2004)
Genome Biol.
, vol.5
, pp. 224
-
-
North, B.J.1
Verdin, E.2
-
21
-
-
77950582432
-
Conformational refinement of hydroxamate-based histone deacetylase inhibitors and exploration of 3-piperidin-3-ylindole analogues of dacinostat (LAQ824)
-
Cho, Y. S.; Whitehead, L.; Li, J.; Chen, C. H.; Jiang, L.; Vögtle, M.; Francotte, E.; Richert, P.; Wagner, T.; Traebert, M.; Lu, Q.; Cao, X.; Dumotier, B.; Fejzo, J.; Rajan, S.; Wang, P.; Yan-Neale, Y.; Shao, W.; Atadja, P.; Shultz, M. Conformational refinement of hydroxamate-based histone deacetylase inhibitors and exploration of 3-piperidin-3-ylindole analogues of dacinostat (LAQ824) J. Med. Chem. 2010, 53, 2952-2963
-
(2010)
J. Med. Chem.
, vol.53
, pp. 2952-2963
-
-
Cho, Y.S.1
Whitehead, L.2
Li, J.3
Chen, C.H.4
Jiang, L.5
Vögtle, M.6
Francotte, E.7
Richert, P.8
Wagner, T.9
Traebert, M.10
Lu, Q.11
Cao, X.12
Dumotier, B.13
Fejzo, J.14
Rajan, S.15
Wang, P.16
Yan-Neale, Y.17
Shao, W.18
Atadja, P.19
Shultz, M.20
more..
-
22
-
-
0035755974
-
Histone deacetylases and cancer: Causes and therapies
-
Marks, P.; Rifkind, R. A.; Richon, V. M.; Breslow, R.; Miller, T.; Kelly, W. K. Histone deacetylases and cancer: causes and therapies Nat. Rev. Cancer 2001, 1, 194-202
-
(2001)
Nat. Rev. Cancer
, vol.1
, pp. 194-202
-
-
Marks, P.1
Rifkind, R.A.2
Richon, V.M.3
Breslow, R.4
Miller, T.5
Kelly, W.K.6
-
23
-
-
21044458874
-
Decreased histone deacetylase activity in chronic obstructive pulmonary disease
-
Ito, K.; Ito, M.; Elliott, W. M.; Cosio, B.; Caramori, G.; Kon, O. M.; Barczyk, A.; Hayashi, S.; Adcock, I. M.; Hogg, J. C.; Barnes, P. J. Decreased histone deacetylase activity in chronic obstructive pulmonary disease N. Engl. J. Med. 2005, 352, 1967-1976
-
(2005)
N. Engl. J. Med.
, vol.352
, pp. 1967-1976
-
-
Ito, K.1
Ito, M.2
Elliott, W.M.3
Cosio, B.4
Caramori, G.5
Kon, O.M.6
Barczyk, A.7
Hayashi, S.8
Adcock, I.M.9
Hogg, J.C.10
Barnes, P.J.11
-
24
-
-
43049091210
-
Structural insights into the Plasmodium falciparum histone deacetylase 1 (PfHDAC-1): A novel target for the development of antimalarial therapy
-
Mukherjee, P.; Pradhan, A.; Shah, F.; Tekwani, B. L.; Avery, M. Structural insights into the Plasmodium falciparum histone deacetylase 1 (PfHDAC-1): A novel target for the development of antimalarial therapy Bioorg. Med. Chem. 2008, 16, 5254-5265
-
(2008)
Bioorg. Med. Chem.
, vol.16
, pp. 5254-5265
-
-
Mukherjee, P.1
Pradhan, A.2
Shah, F.3
Tekwani, B.L.4
Avery, M.5
-
25
-
-
33845996135
-
Phase 2 trial of oral vorinostat (suberoylanilide hydroxamic acid, SAHA) for refractory cutaneous T-cell lymphoma (CTCL)
-
Duvic, M.; Talpur, R.; Ni, X.; Zhang, C.; Hazarika, P.; Kelly, C.; Chiao, J. H.; Reilly, J. F.; Ricker, J. L.; Richon, V. M.; Frankel, S. R. Phase 2 trial of oral vorinostat (suberoylanilide hydroxamic acid, SAHA) for refractory cutaneous T-cell lymphoma (CTCL) Blood 2007, 109, 31-39
-
(2007)
Blood
, vol.109
, pp. 31-39
-
-
Duvic, M.1
Talpur, R.2
Ni, X.3
Zhang, C.4
Hazarika, P.5
Kelly, C.6
Chiao, J.H.7
Reilly, J.F.8
Ricker, J.L.9
Richon, V.M.10
Frankel, S.R.11
-
26
-
-
84864722456
-
Histone deacetylase inhibitors in the treatment of cancer: Overview and perpectives
-
Giannini, G.; Cabri, W.; Fattorusso, C.; Rodriquez, M. Histone deacetylase inhibitors in the treatment of cancer: overview and perpectives Future Med. Chem. 2012, 4, 1439-1460
-
(2012)
Future Med. Chem.
, vol.4
, pp. 1439-1460
-
-
Giannini, G.1
Cabri, W.2
Fattorusso, C.3
Rodriquez, M.4
-
27
-
-
0034192770
-
Anti-malarial effect of histone deacetylation inhibitors and mammalian tumour cytodifferentiating agents
-
Andrews, K. T.; Walduck, A.; Kelso, M. J.; Fairlie, D. P.; Saul, A.; Parsons, P. G. Anti-malarial effect of histone deacetylation inhibitors and mammalian tumour cytodifferentiating agents Int. J. Parasitol. 2000, 30, 761-768
-
(2000)
Int. J. Parasitol.
, vol.30
, pp. 761-768
-
-
Andrews, K.T.1
Walduck, A.2
Kelso, M.J.3
Fairlie, D.P.4
Saul, A.5
Parsons, P.G.6
-
28
-
-
56749177085
-
The class i histone deacetylases of the platyhelminth parasite Schistosoma mansoni
-
Oger, F.; Dubois, F.; Caby, S.; Noël, C.; Cornette, J.; Bertin, B.; Capron, M.; Pierce, R. J. The class I histone deacetylases of the platyhelminth parasite Schistosoma mansoni Biochem. Biophys. Res. Commun. 2008, 377, 1079-1084
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.377
, pp. 1079-1084
-
-
Oger, F.1
Dubois, F.2
Caby, S.3
Noël, C.4
Cornette, J.5
Bertin, B.6
Capron, M.7
Pierce, R.J.8
-
29
-
-
68749093790
-
Histone deacetylase inhibitors induce apoptosis, histone hyperacetylation and up-regulation of gene transcription in Schistosoma mansoni
-
Dubois, F.; Caby, S.; Oger, F.; Cosseau, C.; Capron, M.; Grunau, C.; Dissous, C.; Pierce, R. J. Histone deacetylase inhibitors induce apoptosis, histone hyperacetylation and up-regulation of gene transcription in Schistosoma mansoni Mol. Biochem. Parasitol. 2009, 168, 7-15
-
(2009)
Mol. Biochem. Parasitol.
, vol.168
, pp. 7-15
-
-
Dubois, F.1
Caby, S.2
Oger, F.3
Cosseau, C.4
Capron, M.5
Grunau, C.6
Dissous, C.7
Pierce, R.J.8
-
30
-
-
82255162175
-
Chromatin regulation in schistosomes and histone modifying enzymes as drug targets
-
Pierce, R. J.; Dubois-Abdesselem, F.; Caby, S.; Trolet, J.; Lancelot, J.; Oger, F.; Bertheaume, N.; Roger, E. Chromatin regulation in schistosomes and histone modifying enzymes as drug targets Mem. Inst. Oswaldo Cruz 2011, 106, 794-801
-
(2011)
Mem. Inst. Oswaldo Cruz
, vol.106
, pp. 794-801
-
-
Pierce, R.J.1
Dubois-Abdesselem, F.2
Caby, S.3
Trolet, J.4
Lancelot, J.5
Oger, F.6
Bertheaume, N.7
Roger, E.8
-
31
-
-
84884685624
-
Structural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke Schistosoma mansoni
-
Marek, M.; Kannan, S.; Hauser, A. T.; Moraes Mourão, M.; Caby, S.; Cura, V.; Stolfa, D. A.; Schmidtkunz, K.; Lancelot, J.; Andrade, L.; Renaud, J. P.; Oliveira, G.; Sippl, W.; Jung, M.; Cavarelli, J.; Pierce, R. J.; Romier, C. Structural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke Schistosoma mansoni PLoS Pathog. 2013, 9, e1003645
-
(2013)
PLoS Pathog.
, vol.9
, pp. 1003645
-
-
Marek, M.1
Kannan, S.2
Hauser, A.T.3
Moraes Mourão, M.4
Caby, S.5
Cura, V.6
Stolfa, D.A.7
Schmidtkunz, K.8
Lancelot, J.9
Andrade, L.10
Renaud, J.P.11
Oliveira, G.12
Sippl, W.13
Jung, M.14
Cavarelli, J.15
Pierce, R.J.16
Romier, C.17
-
32
-
-
84907575993
-
Molecular basis for the anti-parasitic activity of a mercaptoacetamide derivative that inhibits histone deacetylase 8 (HDAC8) from the human pathogen Schistosoma mansoni
-
Stolfa, D. A.; Marek, M.; Lancelot, J.; Hauser, A. T.; Walter, A.; Leproult, E.; Melesina, J.; Rumpf, T.; Wurtz, J. M.; Cavarelli, J.; Sippl, W.; Pierce, R. J.; Romier, C.; Jung, M. Molecular basis for the anti-parasitic activity of a mercaptoacetamide derivative that inhibits histone deacetylase 8 (HDAC8) from the human pathogen Schistosoma mansoni J. Mol. Biol. 2014, 426 (20) 3442-3453 10.1016/j.jmb.2014.03.007
-
(2014)
J. Mol. Biol.
, vol.426
, Issue.20
, pp. 3442-3453
-
-
Stolfa, D.A.1
Marek, M.2
Lancelot, J.3
Hauser, A.T.4
Walter, A.5
Leproult, E.6
Melesina, J.7
Rumpf, T.8
Wurtz, J.M.9
Cavarelli, J.10
Sippl, W.11
Pierce, R.J.12
Romier, C.13
Jung, M.14
-
33
-
-
3142562372
-
Structural Snapshots of Human HDAC8 Provide Insights into the Class i Histone Deacetylases
-
Somoza, J. R.; Skene, R. J.; Katz, B. A.; Mol, C.; Ho, J. D.; Jennings, A. J.; Luong, C.; Arvai, A.; Buggy, J. J.; Chi, E.; Tang, J.; Sang, B. C.; Verner, E.; Wynands, R.; Leahy, E. M.; Dougan, D. R.; Snell, G.; Navre, M.; Knuth, M. W.; Swanson, R. V.; McRee, D. E.; Tari, L. W. Structural Snapshots of Human HDAC8 Provide Insights into the Class I Histone Deacetylases Structure 2004, 12, 1325-34
-
(2004)
Structure
, vol.12
, pp. 1325-34
-
-
Somoza, J.R.1
Skene, R.J.2
Katz, B.A.3
Mol, C.4
Ho, J.D.5
Jennings, A.J.6
Luong, C.7
Arvai, A.8
Buggy, J.J.9
Chi, E.10
Tang, J.11
Sang, B.C.12
Verner, E.13
Wynands, R.14
Leahy, E.M.15
Dougan, D.R.16
Snell, G.17
Navre, M.18
Knuth, M.W.19
Swanson, R.V.20
McRee, D.E.21
Tari, L.W.22
more..
-
34
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A.; Blundell, T. L. Comparative protein modelling by satisfaction of spatial restraints J. Mol. Biol. 1993, 234, 779-815
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
35
-
-
84891304904
-
Design, synthesis, and biological evaluation of potent and selective Class IIa histone deacetylase (HDAC) inhibitors as a potential therapy for Huntington s disease
-
Bürli, R. W.; Luckhurst, C. A.; Aziz, O.; Matthews, K. L.; Yates, D.; Lyons, K. A.; Beconi, M.; McAllister, G.; Breccia, P.; Stott, A. J.; Penrose, S. D.; Wall, M.; Lamers, M.; Leonard, P.; Müller, I.; Richardson, C. M.; Jarvis, R.; Stones, L.; Hughes, S.; Wishart, G.; Haughan, A. F.; OConnell, C.; Mead, T.; McNeil, H.; Vann, J.; Mangette, J.; Maillard, M.; Beaumont, V.; Munoz-Sanjuan, I.; Dominguez, C. Design, synthesis, and biological evaluation of potent and selective Class IIa histone deacetylase (HDAC) inhibitors as a potential therapy for Huntington s disease J. Med. Chem. 2013, 56, 9934-9954
-
(2013)
J. Med. Chem.
, vol.56
, pp. 9934-9954
-
-
Bürli, R.W.1
Luckhurst, C.A.2
Aziz, O.3
Matthews, K.L.4
Yates, D.5
Lyons, K.A.6
Beconi, M.7
McAllister, G.8
Breccia, P.9
Stott, A.J.10
Penrose, S.D.11
Wall, M.12
Lamers, M.13
Leonard, P.14
Müller, I.15
Richardson, C.M.16
Jarvis, R.17
Stones, L.18
Hughes, S.19
Wishart, G.20
Haughan, A.F.21
Oconnell, C.22
Mead, T.23
McNeil, H.24
Vann, J.25
Mangette, J.26
Maillard, M.27
Beaumont, V.28
Munoz-Sanjuan, I.29
Dominguez, C.30
more..
-
36
-
-
78049265751
-
-
University of California, San Francisco
-
Case, D. A.; Darden, T. A.; Cheatham, T. E., III; Simmerling, C. L.; Wang, J.; Duke, R. E.; Luo, R.; Walker, R. C.; Zhang, W.; Merz, K. M.; Roberts, B.; Wang, B.; Hayik, S.; Roitberg, A.; Seabra, G.; Kolossváry, I.; Wong, K. F.; Paesani, F.; Vanicek, J.; Liu, J.; Wu, X.; Brozell, S. R.; Steinbrecher, T.; Gohlke, H.; Cai, Q.; Ye, X.; Wang, J.; Hsieh, M. J.; Cui, G.; Roe, D. R.; Mathews, D. H.; Seetin, M. G.; Sagui, C.; Babin, V.; Luchko, T.; Gusarov, S.; Kovalenko, A.; Kollman, P. A. AMBER 11; University of California, San Francisco, 2010.
-
(2010)
AMBER 11
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
Roberts, B.11
Wang, B.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossváry, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Liu, J.20
Wu, X.21
Brozell, S.R.22
Steinbrecher, T.23
Gohlke, H.24
Cai, Q.25
Ye, X.26
Wang, J.27
Hsieh, M.J.28
Cui, G.29
Roe, D.R.30
Mathews, D.H.31
Seetin, M.G.32
Sagui, C.33
Babin, V.34
Luchko, T.35
Gusarov, S.36
Kovalenko, A.37
Kollman, P.A.38
more..
-
37
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 1983, 79, 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
38
-
-
0242663237
-
Point charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan, Y.; Wu, C.; Chowdhury, S.; Lee, M. C.; Xiong, G.; Zhang, W.; Yang, R.; Cieplak, P.; Luo, R.; Lee, T.; Caldwell, J.; Wang, J.; Kollman, P. Point charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations J. Comput. Chem. 2003, 24, 1999-2012
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
Caldwell, J.11
Wang, J.12
Kollman, P.13
-
39
-
-
0000510540
-
Novel zinc protein molecular dynamics simulations: Steps toward antiangiogenesis for cancer treatment
-
Pang, Y. P. Novel zinc protein molecular dynamics simulations: Steps toward antiangiogenesis for cancer treatment J. Mol. Model. 1999, 5, 196-202
-
(1999)
J. Mol. Model.
, vol.5
, pp. 196-202
-
-
Pang, Y.P.1
-
40
-
-
33846823909
-
Particle mesh Ewald: An N-log(N) method for Ewald sums in large systems
-
Darden, T.; York, D.; Pedersen, L. Particle mesh Ewald: An N-log(N) method for Ewald sums in large systems J. Chem. Phys. 1993, 98, 10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
41
-
-
84986440341
-
Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models
-
Miyamoto, S.; Kollman, P. A. Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models J. Comput. Chem. 1992, 13, 952-962
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
42
-
-
33846227108
-
Enhanced sampling of peptide and protein conformations using replica exchange simulations with a peptide backbone biasing-potential
-
Kannan, S.; Zacharias, M. Enhanced sampling of peptide and protein conformations using replica exchange simulations with a peptide backbone biasing-potential Proteins 2007, 66, 697-706
-
(2007)
Proteins
, vol.66
, pp. 697-706
-
-
Kannan, S.1
Zacharias, M.2
-
43
-
-
84908237232
-
-
Schrödinger, LLC: New York
-
Schrödinger Suite 2012, Maestro version 9.3, Protein Preparation Wizard, Epik version 2.3, Glide version 5.8, Schrödinger, LLC: New York, 2012.
-
(2012)
Schrödinger Suite 2012, Maestro Version 9.3, Protein Preparation Wizard, Epik Version 2.3, Glide Version 5.8
-
-
-
44
-
-
84864199587
-
ZINC: A Free Tool to Discover Chemistry for Biology
-
Irwin, J. J.; Sterling, T.; Mysinger, M. M.; Bolstad, E. S.; Coleman, R. G. ZINC: A Free Tool to Discover Chemistry for Biology J. Chem. Inf. Model. 2012, 52, 1757-1768
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 1757-1768
-
-
Irwin, J.J.1
Sterling, T.2
Mysinger, M.M.3
Bolstad, E.S.4
Coleman, R.G.5
-
45
-
-
33750124980
-
Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein-Ligand Complexes
-
Friesner, R. A.; Murphy, R. B.; Repasky, M. P.; Frye, L. L.; Greenwood, J. R.; Halgren, T. A.; Sanschagrin, P. C.; Mainz, D. T. Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein-Ligand Complexes J. Med. Chem. 2006, 49, 6177-6196
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6177-6196
-
-
Friesner, R.A.1
Murphy, R.B.2
Repasky, M.P.3
Frye, L.L.4
Greenwood, J.R.5
Halgren, T.A.6
Sanschagrin, P.C.7
Mainz, D.T.8
-
46
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking J. Mol. Biol. 1997, 267, 727-748
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
47
-
-
0032533791
-
Flexible docking using Tabu search and an empirical estimate of binding affinity
-
Baxter, C. A.; Murray, C. W.; Clark, D. E.; Westhead, D. R.; Eldridge, M. D. Flexible docking using Tabu search and an empirical estimate of binding affinity Proteins 1998, 33, 367-382
-
(1998)
Proteins
, vol.33
, pp. 367-382
-
-
Baxter, C.A.1
Murray, C.W.2
Clark, D.E.3
Westhead, D.R.4
Eldridge, M.D.5
-
48
-
-
26444468103
-
General and Targeted Statistical Potentials for Protein-Ligand Interactions
-
Mooij, W. T. M.; Verdonk, M. L. General and Targeted Statistical Potentials for Protein-Ligand Interactions Proteins: Struct. Funct. Bioinf. 2005, 61, 72-287
-
(2005)
Proteins: Struct. Funct. Bioinf.
, vol.61
, pp. 72-287
-
-
Mooij, W.T.M.1
Verdonk, M.L.2
-
49
-
-
62449330667
-
Empirical Scoring Functions for Advanced Protein- Ligand Docking with PLANTSO
-
Stützle, K. T.; Exner, T. E. Empirical Scoring Functions for Advanced Protein- Ligand Docking with PLANTSO J. Chem. Inf. Model. 2009, 49, 84-96
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 84-96
-
-
Stützle, K.T.1
Exner, T.E.2
-
50
-
-
4744370522
-
Subtype selective substrates for histone deacetylases
-
Heltweg, B.; Dequiedt, F.; Marshall, B. L.; Brauch, C.; Yoshida, M.; Nishino, N.; Verdin, E.; Jung, M. Subtype selective substrates for histone deacetylases J. Med. Chem. 2004, 47, 5235-5243
-
(2004)
J. Med. Chem.
, vol.47
, pp. 5235-5243
-
-
Heltweg, B.1
Dequiedt, F.2
Marshall, B.L.3
Brauch, C.4
Yoshida, M.5
Nishino, N.6
Verdin, E.7
Jung, M.8
-
51
-
-
77950679234
-
A Structure-Based Virtual Screening Approach toward the Discovery of Histone Deacetylase Inhibitors: Identification of Promising Zinc-Chelating Groups
-
Park, H.; Kim, S.; Kim, Y.; Lim, S. J. A Structure-Based Virtual Screening Approach toward the Discovery of Histone Deacetylase Inhibitors: Identification of Promising Zinc-Chelating Groups Chem. Med. Chem. 2010, 5, 591-597
-
(2010)
Chem. Med. Chem.
, vol.5
, pp. 591-597
-
-
Park, H.1
Kim, S.2
Kim, Y.3
Lim, S.J.4
-
52
-
-
33744514787
-
Substrate and inhibitor specificity of class 1 and class 2 histone deacetylases
-
Hildmann, C.; Wegener, D.; Riester, D.; Hempel, R.; Schober, A.; Merana, J.; Giurato, L.; Guccione, S.; Nielsen, T. K.; Ficner, R.; Schwienhorst, A. Substrate and inhibitor specificity of class 1 and class 2 histone deacetylases J. Biotechnol. 2006, 124, 258-270
-
(2006)
J. Biotechnol.
, vol.124
, pp. 258-270
-
-
Hildmann, C.1
Wegener, D.2
Riester, D.3
Hempel, R.4
Schober, A.5
Merana, J.6
Giurato, L.7
Guccione, S.8
Nielsen, T.K.9
Ficner, R.10
Schwienhorst, A.11
-
53
-
-
34247376560
-
Design and evaluation of Linkerless hydroxamic acids as selective HDAC8 inhibitors
-
Krennhrubec, K.; Marshall, B. L.; Hedglin, M.; Verdin, E.; Ulrich, S. M. Design and evaluation of Linkerless hydroxamic acids as selective HDAC8 inhibitors Bioorg. Med. Chem. Lett. 2007, 17, 2874-8
-
(2007)
Bioorg. Med. Chem. Lett.
, vol.17
, pp. 2874-2878
-
-
Krennhrubec, K.1
Marshall, B.L.2
Hedglin, M.3
Verdin, E.4
Ulrich, S.M.5
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