-
1
-
-
0032167569
-
Distinct frequency-distributions of homopolymeric DNA tracts in different genomes
-
147789, 9705519
-
Dechering KJ, Cuelenaere K, Konings RN, Leunissen JA. Distinct frequency-distributions of homopolymeric DNA tracts in different genomes. Nucl Acids Res 1998, 26:4056-4062. 10.1093/nar/26.17.4056, 147789, 9705519.
-
(1998)
Nucl Acids Res
, vol.26
, pp. 4056-4062
-
-
Dechering, K.J.1
Cuelenaere, K.2
Konings, R.N.3
Leunissen, J.A.4
-
2
-
-
30744433869
-
Evidence for long poly(dA).poly(dT) tracts in D. discoideum DNA at high frequencies and their preferential avoidance of nucleosomal DNA core regions
-
16363878
-
Marx KA, Zhou Y, Kishawi IQ. Evidence for long poly(dA).poly(dT) tracts in D. discoideum DNA at high frequencies and their preferential avoidance of nucleosomal DNA core regions. J Biomol Struct Dyn 2006, 23:429-446. 10.1080/07391102.2006.10531237, 16363878.
-
(2006)
J Biomol Struct Dyn
, vol.23
, pp. 429-446
-
-
Marx, K.A.1
Zhou, Y.2
Kishawi, I.Q.3
-
3
-
-
25444495267
-
Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G + C)% composition
-
539357, 15598342
-
Zhou Y, Bizzaro JW, Marx KA. Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G + C)% composition. BMC Genomics 2004, 5:95-104. 10.1186/1471-2164-5-95, 539357, 15598342.
-
(2004)
BMC Genomics
, vol.5
, pp. 95-104
-
-
Zhou, Y.1
Bizzaro, J.W.2
Marx, K.A.3
-
4
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, Segal E. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comp Biol 2008, 4:e1000216.
-
(2008)
PLoS Comp Biol
, vol.4
, pp. e1000216
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
Sharon, E.5
Lubling, Y.6
Widom, J.7
Segal, E.8
-
5
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
-
2493396, 18550805
-
Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, Qi J, Schuster SC, Albert I, Pugh BF. A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res 2008, 18:1073-1083. 10.1101/gr.078261.108, 2493396, 18550805.
-
(2008)
Genome Res
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.N.1
Ioshikhes, I.P.2
Venters, B.J.3
Jiang, C.4
Tomsho, L.P.5
Qi, J.6
Schuster, S.C.7
Albert, I.8
Pugh, B.F.9
-
6
-
-
12244265093
-
DNA replication origins in the Schizosaccharomyces pombe genome
-
539312, 15623550
-
Dai J, Chuang RY, Kelly TJ. DNA replication origins in the Schizosaccharomyces pombe genome. Proc Natl Acad Sci U S A 2005, 102:337-342. 10.1073/pnas.0408811102, 539312, 15623550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 337-342
-
-
Dai, J.1
Chuang, R.Y.2
Kelly, T.J.3
-
7
-
-
60349115060
-
Poly(dA:dT) tracts: major determinants of nucleosome organization
-
2673466, 19208466
-
Segal E, Widom J. Poly(dA:dT) tracts: major determinants of nucleosome organization. Curr Opin Struct Biol 2009, 19:65-71. 10.1016/j.sbi.2009.01.004, 2673466, 19208466.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 65-71
-
-
Segal, E.1
Widom, J.2
-
8
-
-
71049147904
-
The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes
-
2770662, 19700771
-
Cohanim AB, Haran TE. The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes. Nucl Acids Res 2009, 37:6466-6476. 10.1093/nar/gkp689, 2770662, 19700771.
-
(2009)
Nucl Acids Res
, vol.37
, pp. 6466-6476
-
-
Cohanim, A.B.1
Haran, T.E.2
-
9
-
-
76949093375
-
Nucleosome positioning: how is it established, and why does it matter?
-
2830277, 19527704
-
Radman-Livaja M, Rando OJ. Nucleosome positioning: how is it established, and why does it matter?. Dev Biol 2010, 339:258-266. 10.1016/j.ydbio.2009.06.012, 2830277, 19527704.
-
(2010)
Dev Biol
, vol.339
, pp. 258-266
-
-
Radman-Livaja, M.1
Rando, O.J.2
-
10
-
-
68349125112
-
What controls nucleosome positions?
-
2810357, 19596482
-
Segal E, Widom J. What controls nucleosome positions?. Trends Genet 2009, 25:335-343. 10.1016/j.tig.2009.06.002, 2810357, 19596482.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
11
-
-
79956316470
-
A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
-
21596991
-
Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, Pugh BF. A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 2011, 332:977-980. 10.1126/science.1200508, 21596991.
-
(2011)
Science
, vol.332
, pp. 977-980
-
-
Zhang, Z.1
Wippo, C.J.2
Wal, M.3
Ward, E.4
Korber, P.5
Pugh, B.F.6
-
12
-
-
17844384565
-
A role for poly (dA) poly(dT) tracts in directing activity of the Plasmodium falciparum calmodulin gene promoter
-
15850701
-
Polson HEJ, Blackman MJ. A role for poly (dA) poly(dT) tracts in directing activity of the Plasmodium falciparum calmodulin gene promoter. Mol Biochem Parasitol 2005, 141:179-189. 10.1016/j.molbiopara.2005.02.008, 15850701.
-
(2005)
Mol Biochem Parasitol
, vol.141
, pp. 179-189
-
-
Polson, H.E.J.1
Blackman, M.J.2
-
13
-
-
0036076810
-
Positive and negative effects of deletions and mutations within the 5' flanking sequences of Plasmodium falciparum DNA polymerase delta
-
12076766
-
Porter ME. Positive and negative effects of deletions and mutations within the 5' flanking sequences of Plasmodium falciparum DNA polymerase delta. Mol Biochem Parasitol 2002, 122:9-19. 10.1016/S0166-6851(02)00064-6, 12076766.
-
(2002)
Mol Biochem Parasitol
, vol.122
, pp. 9-19
-
-
Porter, M.E.1
-
14
-
-
75649102519
-
Nucleosome landscape and control of transcription in the human malaria parasite
-
2813478, 20054063
-
Ponts N, Harris EY, Prudhomme J, Wick I, Eckhardt-Ludka C, Hicks GR, Hardiman G, Lonardi S, Le Roch KG. Nucleosome landscape and control of transcription in the human malaria parasite. Genome Res 2010, 20:228-238. 10.1101/gr.101063.109, 2813478, 20054063.
-
(2010)
Genome Res
, vol.20
, pp. 228-238
-
-
Ponts, N.1
Harris, E.Y.2
Prudhomme, J.3
Wick, I.4
Eckhardt-Ludka, C.5
Hicks, G.R.6
Hardiman, G.7
Lonardi, S.8
Le Roch, K.G.9
-
15
-
-
74049160421
-
Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes
-
2801526, 20015349
-
Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L. Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes. BMC Genomics 2009, 10:610-621. 10.1186/1471-2164-10-610, 2801526, 20015349.
-
(2009)
BMC Genomics
, vol.10
, pp. 610-621
-
-
Westenberger, S.J.1
Cui, L.2
Dharia, N.3
Winzeler, E.4
Cui, L.5
-
16
-
-
84900405543
-
DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum
-
4035074, 24885191
-
Bunnik EM, Polishko A, Prudhomme J, Ponts N, Gill SS, Lonardi S, Le Roch KG. DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum. BMC Genomics 2014, 15:347-353. 10.1186/1471-2164-15-347, 4035074, 24885191.
-
(2014)
BMC Genomics
, vol.15
, pp. 347-353
-
-
Bunnik, E.M.1
Polishko, A.2
Prudhomme, J.3
Ponts, N.4
Gill, S.S.5
Lonardi, S.6
Le Roch, K.G.7
-
17
-
-
77956802116
-
Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum
-
Cui L, Miao J. Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum. Euk Cell 2010, 9:1138-1149.
-
(2010)
Euk Cell
, vol.9
, pp. 1138-1149
-
-
Cui, L.1
Miao, J.2
-
18
-
-
84861190687
-
The role of chromatin in Plasmodium gene expression
-
22360617
-
Duffy MF, Selvarajah SA, Josling GA, Petter M. The role of chromatin in Plasmodium gene expression. Cell Microbiol 2012, 14:819-828. 10.1111/j.1462-5822.2012.01777.x, 22360617.
-
(2012)
Cell Microbiol
, vol.14
, pp. 819-828
-
-
Duffy, M.F.1
Selvarajah, S.A.2
Josling, G.A.3
Petter, M.4
-
19
-
-
84900465317
-
Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
-
24671853
-
Ay F, Bunnik EM, Varoquaux N, Bol SM, Prudhomme J, Vert JP, Noble WS, Le Roch KG. Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression. Genome Res 2014, 24:974-988. 10.1101/gr.169417.113, 24671853.
-
(2014)
Genome Res
, vol.24
, pp. 974-988
-
-
Ay, F.1
Bunnik, E.M.2
Varoquaux, N.3
Bol, S.M.4
Prudhomme, J.5
Vert, J.P.6
Noble, W.S.7
Le Roch, K.G.8
-
20
-
-
79956326042
-
Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?
-
Ponts N, Harris EY, Lonardi S, Le Roch KG. Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?. Inf Gen Evol 2011, 11:716-724.
-
(2011)
Inf Gen Evol
, vol.11
, pp. 716-724
-
-
Ponts, N.1
Harris, E.Y.2
Lonardi, S.3
Le Roch, K.G.4
-
21
-
-
58549094894
-
Control of gene expression in Plasmodium falciparum - ten years on
-
19110008
-
Horrocks P, Wong E, Russell K, Emes RD. Control of gene expression in Plasmodium falciparum - ten years on. Mol Biochem Parasitol 2009, 164:9-25. 10.1016/j.molbiopara.2008.11.010, 19110008.
-
(2009)
Mol Biochem Parasitol
, vol.164
, pp. 9-25
-
-
Horrocks, P.1
Wong, E.2
Russell, K.3
Emes, R.D.4
-
22
-
-
84876288562
-
Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum
-
3681616, 23601558
-
Russell K, Hasenkamp S, Emes R, Horrocks P. Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum. BMC Genomics 2013, 14:267-277. 10.1186/1471-2164-14-267, 3681616, 23601558.
-
(2013)
BMC Genomics
, vol.14
, pp. 267-277
-
-
Russell, K.1
Hasenkamp, S.2
Emes, R.3
Horrocks, P.4
-
23
-
-
84899100823
-
Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
-
4007998, 24559473
-
Siegel TN, Hon CC, Zhang Q, Lopez-Rubio JJ, Scheidig-Benatar C, Martins RM, Sismeiro O, Coppee JY, Scherf A. Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum. BMC Genomics 2014, 15:150-159. 10.1186/1471-2164-15-150, 4007998, 24559473.
-
(2014)
BMC Genomics
, vol.15
, pp. 150-159
-
-
Siegel, T.N.1
Hon, C.C.2
Zhang, Q.3
Lopez-Rubio, J.J.4
Scheidig-Benatar, C.5
Martins, R.M.6
Sismeiro, O.7
Coppee, J.Y.8
Scherf, A.9
-
24
-
-
11144353587
-
Complete genome sequence of the apicomplexan Cryptosporidium parvum
-
15044751
-
Abrahamsen MS, Templeton TJ, Enomoto S, Abrahante JE, Zhu G, Lancto CA, Deng M, Liu C, Widmer G, Tzipori S, Buck GA, Xu P, Bankier AT, Dear PH, Konfortov BA, Spriggs HF, Iyer L, Anantharaman V, Aravind L, Kapur V. Complete genome sequence of the apicomplexan Cryptosporidium parvum. Science 2004, 304:441-445. 10.1126/science.1094786, 15044751.
-
(2004)
Science
, vol.304
, pp. 441-445
-
-
Abrahamsen, M.S.1
Templeton, T.J.2
Enomoto, S.3
Abrahante, J.E.4
Zhu, G.5
Lancto, C.A.6
Deng, M.7
Liu, C.8
Widmer, G.9
Tzipori, S.10
Buck, G.A.11
Xu, P.12
Bankier, A.T.13
Dear, P.H.14
Konfortov, B.A.15
Spriggs, H.F.16
Iyer, L.17
Anantharaman, V.18
Aravind, L.19
Kapur, V.20
more..
-
25
-
-
36048987965
-
Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa
-
Brayton KA, Lau AO, Herndon DR, Hannick L, Kappmeyer LS, Berens SJ, Bidwell SL, Brown WC, Crabtree J, Fadrosh D, Feldblum T, Forberger HA, Haas BJ, Howell JM, Khouri H, Koo H, Mann DJ, Norimine J, Paulsen IT, Radune D, Ren Q, Smith RK, Suarez CE, White O, Wortman JR, Knowles DP, McElwain TF, Nene VM. Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. PLoS Path 2007, 3:1401-1413.
-
(2007)
PLoS Path
, vol.3
, pp. 1401-1413
-
-
Brayton, K.A.1
Lau, A.O.2
Herndon, D.R.3
Hannick, L.4
Kappmeyer, L.S.5
Berens, S.J.6
Bidwell, S.L.7
Brown, W.C.8
Crabtree, J.9
Fadrosh, D.10
Feldblum, T.11
Forberger, H.A.12
Haas, B.J.13
Howell, J.M.14
Khouri, H.15
Koo, H.16
Mann, D.J.17
Norimine, J.18
Paulsen, I.T.19
Radune, D.20
Ren, Q.21
Smith, R.K.22
Suarez, C.E.23
White, O.24
Wortman, J.R.25
Knowles, D.P.26
McElwain, T.F.27
Nene, V.M.28
more..
-
26
-
-
53649104458
-
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
-
2651158, 18843361
-
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kanga S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature 2008, 455:757-763. 10.1038/nature07327, 2651158, 18843361.
-
(2008)
Nature
, vol.455
, pp. 757-763
-
-
Carlton, J.M.1
Adams, J.H.2
Silva, J.C.3
Bidwell, S.L.4
Lorenzi, H.5
Caler, E.6
Crabtree, J.7
Angiuoli, S.V.8
Merino, E.F.9
Amedeo, P.10
Cheng, Q.11
Coulson, R.M.12
Crabb, B.S.13
Del Portillo, H.A.14
Essien, K.15
Feldblyum, T.V.16
Fernandez-Becerra, C.17
Gilson, P.R.18
Gueye, A.H.19
Guo, X.20
Kanga, S.21
Kooij, T.W.22
Korsinczky, M.23
Meyer, E.V.24
Nene, V.25
Paulsen, I.26
White, O.27
Ralph, S.A.28
Ren, Q.29
Sargeant, T.J.30
more..
-
27
-
-
0037015592
-
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
-
12368865
-
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kanga S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature 2002, 419:512-519. 10.1038/nature01099, 12368865.
-
(2002)
Nature
, vol.419
, pp. 512-519
-
-
Carlton, J.M.1
Adams, J.H.2
Silva, J.C.3
Bidwell, S.L.4
Lorenzi, H.5
Caler, E.6
Crabtree, J.7
Angiuoli, S.V.8
Merino, E.F.9
Amedeo, P.10
Cheng, Q.11
Coulson, R.M.12
Crabb, B.S.13
Del Portillo, H.A.14
Essien, K.15
Feldblyum, T.V.16
Fernandez-Becerra, C.17
Gilson, P.R.18
Gueye, A.H.19
Guo, X.20
Kanga, S.21
Kooij, T.W.22
Korsinczky, M.23
Meyer, E.V.24
Nene, V.25
Paulsen, I.26
White, O.27
Ralph, S.A.28
Ren, Q.29
Sargeant, T.J.30
more..
-
28
-
-
21644437935
-
Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes
-
15994558
-
Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, Shallom SJ, Weidman J, Jiang L, Lynn J, Weaver B, Shoaibi A, Domingo AR, Wasawo D, Crabtree J, Wortman JR, Haas B, Angiuoli SV, Creasy TH, Lu C, Suh B, et al. Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science 2005, 309:134-137. 10.1126/science.1110439, 15994558.
-
(2005)
Science
, vol.309
, pp. 134-137
-
-
Gardner, M.J.1
Bishop, R.2
Shah, T.3
de Villiers, E.P.4
Carlton, J.M.5
Hall, N.6
Ren, Q.7
Paulsen, I.T.8
Pain, A.9
Berriman, M.10
Wilson, R.J.11
Sato, S.12
Ralph, S.A.13
Mann, D.J.14
Xiong, Z.15
Shallom, S.J.16
Weidman, J.17
Jiang, L.18
Lynn, J.19
Weaver, B.20
Shoaibi, A.21
Domingo, A.R.22
Wasawo, D.23
Crabtree, J.24
Wortman, J.R.25
Haas, B.26
Angiuoli, S.V.27
Creasy, T.H.28
Lu, C.29
Suh, B.30
more..
-
29
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
3836256, 12368864
-
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 2002, 419:498-511. 10.1038/nature01097, 3836256, 12368864.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
Carlton, J.M.7
Pain, A.8
Nelson, K.E.9
Bowman, S.10
Paulsen, I.T.11
James, K.12
Eisen, J.A.13
Rutherford, K.14
Salzberg, S.L.15
Craig, A.16
Kyes, S.17
Chan, M.S.18
Nene, V.19
Shallom, S.J.20
Suh, B.21
Peterson, J.22
Angiuoli, S.23
Pertea, M.24
Allen, J.25
Selengut, J.26
Haft, D.27
Mather, M.W.28
Vaidya, A.B.29
Martin, D.M.30
more..
-
30
-
-
53649110550
-
The genome of the simian and human malaria parasite Plasmodium knowlesi
-
2656934, 18843368
-
Pain A, Bohme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D, Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule S, et al. The genome of the simian and human malaria parasite Plasmodium knowlesi. Nature 2008, 455:799-803. 10.1038/nature07306, 2656934, 18843368.
-
(2008)
Nature
, vol.455
, pp. 799-803
-
-
Pain, A.1
Bohme, U.2
Berry, A.E.3
Mungall, K.4
Finn, R.D.5
Jackson, A.P.6
Mourier, T.7
Mistry, J.8
Pasini, E.M.9
Aslett, M.A.10
Balasubrammaniam, S.11
Borgwardt, K.12
Brooks, K.13
Carret, C.14
Carver, T.J.15
Cherevach, I.16
Chillingworth, T.17
Clark, T.G.18
Galinski, M.R.19
Hall, N.20
Harper, D.21
Harris, D.22
Hauser, H.23
Ivens, A.24
Janssen, C.S.25
Keane, T.26
Larke, N.27
Lapp, S.28
Marti, M.29
Moule, S.30
more..
-
31
-
-
21644452778
-
Genome of the host-cell transforming parasite Theileria annulata compared with T. parva
-
15994557
-
Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D, Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule S, et al. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science 2005, 309:131-133. 10.1126/science.1110418, 15994557.
-
(2005)
Science
, vol.309
, pp. 131-133
-
-
Pain, A.1
Böhme, U.2
Berry, A.E.3
Mungall, K.4
Finn, R.D.5
Jackson, A.P.6
Mourier, T.7
Mistry, J.8
Pasini, E.M.9
Aslett, M.A.10
Balasubrammaniam, S.11
Borgwardt, K.12
Brooks, K.13
Carret, C.14
Carver, T.J.15
Cherevach, I.16
Chillingworth, T.17
Clark, T.G.18
Galinski, M.R.19
Hall, N.20
Harper, D.21
Harris, D.22
Hauser, H.23
Ivens, A.24
Janssen, C.S.25
Keane, T.26
Larke, N.27
Lapp, S.28
Marti, M.29
Moule, S.30
more..
-
32
-
-
84861207409
-
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy
-
Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham SM, Mourier T, Norton R, Quail MA, Sanders M, Shanmugam D, Sohal A, Wasmuth JD, Brunk B, Grigg ME, Howard JC, Parkinson J, Roos DS, Trees AJ, Berriman M, Pain A, Wastling JM. Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. PLoS Path 2012, 8:e1002567.
-
(2012)
PLoS Path
, vol.8
, pp. e1002567
-
-
Reid, A.J.1
Vermont, S.J.2
Cotton, J.A.3
Harris, D.4
Hill-Cawthorne, G.A.5
Könen-Waisman, S.6
Latham, S.M.7
Mourier, T.8
Norton, R.9
Quail, M.A.10
Sanders, M.11
Shanmugam, D.12
Sohal, A.13
Wasmuth, J.D.14
Brunk, B.15
Grigg, M.E.16
Howard, J.C.17
Parkinson, J.18
Roos, D.S.19
Trees, A.J.20
Berriman, M.21
Pain, A.22
Wastling, J.M.23
more..
-
33
-
-
7744238311
-
The genome of Cryptosporidium hominis
-
15510150
-
Xu P, Widmer G, Wang Y, Ozaki LS, Alves JM, Serrano MG, Puiu D, Manque P, Akiyoshi D, Mackey AJ, Pearson WR, Dear PH, Bankier AT, Peterson DL, Abrahamsen MS, Kapur V, Tzipori S, Buck GA. The genome of Cryptosporidium hominis. Nature 2004, 431:1107-1112. 10.1038/nature02977, 15510150.
-
(2004)
Nature
, vol.431
, pp. 1107-1112
-
-
Xu, P.1
Widmer, G.2
Wang, Y.3
Ozaki, L.S.4
Alves, J.M.5
Serrano, M.G.6
Puiu, D.7
Manque, P.8
Akiyoshi, D.9
Mackey, A.J.10
Pearson, W.R.11
Dear, P.H.12
Bankier, A.T.13
Peterson, D.L.14
Abrahamsen, M.S.15
Kapur, V.16
Tzipori, S.17
Buck, G.A.18
-
34
-
-
2942580979
-
Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA
-
165442, 12791171
-
Bizzaro JW, Marx KA. Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA. BMC Bioinformatics 2003, 4:22-25. 10.1186/1471-2105-4-22, 165442, 12791171.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 22-25
-
-
Bizzaro, J.W.1
Marx, K.A.2
-
35
-
-
59949101979
-
Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
-
Brick K, Watanabe J, Pizzi E. Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum. Genome Biol 2008, 9(12):178-184.
-
(2008)
Genome Biol
, vol.9
, Issue.12
, pp. 178-184
-
-
Brick, K.1
Watanabe, J.2
Pizzi, E.3
-
36
-
-
1942499339
-
Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans
-
15170261
-
Denver DR, Morris K, Kewalramani A, Harris KE, Chow A, Estes S, Lynch M, Thomas WK. Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans. J Mol Evol 2004, 58:584-595. 10.1007/s00239-004-2580-4, 15170261.
-
(2004)
J Mol Evol
, vol.58
, pp. 584-595
-
-
Denver, D.R.1
Morris, K.2
Kewalramani, A.3
Harris, K.E.4
Chow, A.5
Estes, S.6
Lynch, M.7
Thomas, W.K.8
-
37
-
-
0034946803
-
Differential distribution of simple sequence repeats in eukaryotic genome sequences
-
11420357
-
Katti MV, Ranjekar PK, Gupta VS. Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 2001, 18:1161-1167. 10.1093/oxfordjournals.molbev.a003903, 11420357.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1161-1167
-
-
Katti, M.V.1
Ranjekar, P.K.2
Gupta, V.S.3
-
38
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: survey and analysis
-
310925, 10899146
-
Toth G, Gaspari Z, Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res 2000, 10:967-981. 10.1101/gr.10.7.967, 310925, 10899146.
-
(2000)
Genome Res
, vol.10
, pp. 967-981
-
-
Toth, G.1
Gaspari, Z.2
Jurka, J.3
-
39
-
-
0029597867
-
The contribution of slippage-like processes to genome evolution
-
Hancock JM. The contribution of slippage-like processes to genome evolution. J Mol Evol 1995, 41:1038-1047.
-
(1995)
J Mol Evol
, vol.41
, pp. 1038-1047
-
-
Hancock, J.M.1
-
40
-
-
0030003384
-
Microsatellite spreading in the human genome: evolutionary mechanisms and structural implications
-
39047, 8692839
-
Nadir E, Margalit H, Gallily T, Ben-Sasson SA. Microsatellite spreading in the human genome: evolutionary mechanisms and structural implications. Proc Natl Acad Sci U S A 1996, 93:6470-6475. 10.1073/pnas.93.13.6470, 39047, 8692839.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 6470-6475
-
-
Nadir, E.1
Margalit, H.2
Gallily, T.3
Ben-Sasson, S.A.4
-
41
-
-
0022533981
-
Cryptic simplicity in DNA is a major source of genetic variation
-
3748144
-
Tautz D, Trick M, Dover GA. Cryptic simplicity in DNA is a major source of genetic variation. Nature 1986, 322:652-656. 10.1038/322652a0, 3748144.
-
(1986)
Nature
, vol.322
, pp. 652-656
-
-
Tautz, D.1
Trick, M.2
Dover, G.A.3
-
42
-
-
0035100172
-
Mobile elements and the genesis of microsatellites in dipterans
-
11230539
-
Wilder J, Hollocher H. Mobile elements and the genesis of microsatellites in dipterans. Mol Biol Evol 2001, 18:384-392. 10.1093/oxfordjournals.molbev.a003814, 11230539.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 384-392
-
-
Wilder, J.1
Hollocher, H.2
-
43
-
-
79960700446
-
Jumbled genomes: missing Apicomplexan synteny
-
3176833, 21504890
-
DeBarry JD, Kissinger JC. Jumbled genomes: missing Apicomplexan synteny. Mol Biol Evol 2011, 28:2855-2871. 10.1093/molbev/msr103, 3176833, 21504890.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2855-2871
-
-
DeBarry, J.D.1
Kissinger, J.C.2
-
44
-
-
33751200507
-
An analysis of mobile genetic elements in three Plasmodium species and their potential impact on the nucleotide composition of the P. falciparum genome
-
1636048, 17083741
-
Durand PM, Oelofse AJ, Coetzer TL. An analysis of mobile genetic elements in three Plasmodium species and their potential impact on the nucleotide composition of the P. falciparum genome. BMC Genomics 2006, 7:282-287. 10.1186/1471-2164-7-282, 1636048, 17083741.
-
(2006)
BMC Genomics
, vol.7
, pp. 282-287
-
-
Durand, P.M.1
Oelofse, A.J.2
Coetzer, T.L.3
-
45
-
-
33744789972
-
Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number
-
1473185, 16702411
-
Roy SW, Hartl DL. Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number. Genome Res 2006, 16:750-756. 10.1101/gr.4845406, 1473185, 16702411.
-
(2006)
Genome Res
, vol.16
, pp. 750-756
-
-
Roy, S.W.1
Hartl, D.L.2
-
46
-
-
33749377870
-
Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution
-
1581436, 16963708
-
Roy SW, Penny D. Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution. Genome Res 2006, 16:1270-1275. 10.1101/gr.5410606, 1581436, 16963708.
-
(2006)
Genome Res
, vol.16
, pp. 1270-1275
-
-
Roy, S.W.1
Penny, D.2
-
47
-
-
84861887798
-
Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium
-
3371697, 22434426
-
Chang GS, Noegel AA, Mavrich TN, Müller R, Tomsho L, Ward E, Felder M, Jiang C, Eichinger L, Glockner G, Glöckner G, Schuster SC, Pugh BF. Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium. Genome Res 2012, 22:1098-1106. 10.1101/gr.131649.111, 3371697, 22434426.
-
(2012)
Genome Res
, vol.22
, pp. 1098-1106
-
-
Chang, G.S.1
Noegel, A.A.2
Mavrich, T.N.3
Müller, R.4
Tomsho, L.5
Ward, E.6
Felder, M.7
Jiang, C.8
Eichinger, L.9
Glockner, G.10
Glöckner, G.11
Schuster, S.C.12
Pugh, B.F.13
-
48
-
-
61949478255
-
Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle
-
Sims JS, Militello KT, Sims PA, Patel VP, Kasper JM, Wirth DF. Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle. Euk Cell 2009, 8(3):327-338.
-
(2009)
Euk Cell
, vol.8
, Issue.3
, pp. 327-338
-
-
Sims, J.S.1
Militello, K.T.2
Sims, P.A.3
Patel, V.P.4
Kasper, J.M.5
Wirth, D.F.6
-
49
-
-
57049103382
-
Plasmodium falciparum: preinitiation complex occupancy of active and inactive promoters during erythrocytic stage
-
18951895
-
Gopalakrishnan AM, Nyindodo LA, Ross Fergus M, Lopez-Estrano C. Plasmodium falciparum: preinitiation complex occupancy of active and inactive promoters during erythrocytic stage. Exp Parasitol 2009, 121:46-54. 10.1016/j.exppara.2008.09.016, 18951895.
-
(2009)
Exp Parasitol
, vol.121
, pp. 46-54
-
-
Gopalakrishnan, A.M.1
Nyindodo, L.A.2
Ross Fergus, M.3
Lopez-Estrano, C.4
-
50
-
-
67349198160
-
An unusual recent expansion of the C-terminal domain of RNA polymerase II in primate malaria parasites features a motif otherwise found only in mammalian polymerases
-
3622039, 19449052
-
Kishore SP, Perkins SL, Templeton TJ, Deitsch KW. An unusual recent expansion of the C-terminal domain of RNA polymerase II in primate malaria parasites features a motif otherwise found only in mammalian polymerases. J Mol Evol 2009, 68:706-714. 10.1007/s00239-009-9245-2, 3622039, 19449052.
-
(2009)
J Mol Evol
, vol.68
, pp. 706-714
-
-
Kishore, S.P.1
Perkins, S.L.2
Templeton, T.J.3
Deitsch, K.W.4
-
51
-
-
78651238244
-
H2A.Z demarcates intergenic regions of the Plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3
-
Bartfai R, Hoeijmakers WA, Salcedo-Amaya AM, Smits AH, Janssen-Megens E, Kaan A, Treeck M, Gilberger TW, Francoijs KJ, Stunnenberg HG. H2A.Z demarcates intergenic regions of the Plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3. PLoS Path 2010, 6(12):e1001223.
-
(2010)
PLoS Path
, vol.6
, Issue.12
, pp. e1001223
-
-
Bartfai, R.1
Hoeijmakers, W.A.2
Salcedo-Amaya, A.M.3
Smits, A.H.4
Janssen-Megens, E.5
Kaan, A.6
Treeck, M.7
Gilberger, T.W.8
Francoijs, K.J.9
Stunnenberg, H.G.10
-
52
-
-
34247495687
-
RepSeq-a database of amino acid repeats present in lower eukaryotic pathogens
-
1854910, 17428323
-
Depledge DP, Lower RP, Smith DF. RepSeq-a database of amino acid repeats present in lower eukaryotic pathogens. BMC Bioinformatics 2007, 8:122-127. 10.1186/1471-2105-8-122, 1854910, 17428323.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 122-127
-
-
Depledge, D.P.1
Lower, R.P.2
Smith, D.F.3
-
53
-
-
71549152207
-
Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins
-
19900443
-
Frugier M, Bour T, Ayach M, Santos MA, Rudinger-Thirion J, Theobald-Dietrich A, Pizzi E. Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins. FEBS Lett 2010, 584:448-454. 10.1016/j.febslet.2009.11.004, 19900443.
-
(2010)
FEBS Lett
, vol.584
, pp. 448-454
-
-
Frugier, M.1
Bour, T.2
Ayach, M.3
Santos, M.A.4
Rudinger-Thirion, J.5
Theobald-Dietrich, A.6
Pizzi, E.7
-
54
-
-
0033918079
-
Divergence of noncoding sequences and of insertions encoding nonglobular domains at a genomic region well conserved in plasmodia
-
Pizzi E, Frontali C. Divergence of noncoding sequences and of insertions encoding nonglobular domains at a genomic region well conserved in plasmodia. J Mol Evol 2000, 50:474-480.
-
(2000)
J Mol Evol
, vol.50
, pp. 474-480
-
-
Pizzi, E.1
Frontali, C.2
-
55
-
-
0035104190
-
Low-complexity regions in Plasmodium falciparum proteins
-
311019, 11157785
-
Pizzi E, Frontali C. Low-complexity regions in Plasmodium falciparum proteins. Genome Res 2001, 11:218-229. 10.1101/gr.GR-1522R, 311019, 11157785.
-
(2001)
Genome Res
, vol.11
, pp. 218-229
-
-
Pizzi, E.1
Frontali, C.2
-
56
-
-
77955943298
-
Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome
-
2922621, 20427419
-
Zilversmit MM, Volkman SK, DePristo MA, Wirth DF, Awadalla P, Hartl DL. Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome. Mol Biol Evol 2010, 27:2198-2209. 10.1093/molbev/msq108, 2922621, 20427419.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2198-2209
-
-
Zilversmit, M.M.1
Volkman, S.K.2
DePristo, M.A.3
Wirth, D.F.4
Awadalla, P.5
Hartl, D.L.6
-
57
-
-
0017784778
-
Control of gamete formation (exflagellation) in malaria parasites
-
12566
-
Carter R, Nijhout MM. Control of gamete formation (exflagellation) in malaria parasites. Science 1977, 195:407-409. 10.1126/science.12566, 12566.
-
(1977)
Science
, vol.195
, pp. 407-409
-
-
Carter, R.1
Nijhout, M.M.2
-
58
-
-
0022447570
-
DNA synthesis in Plasmodium berghei during asexual and sexual development
-
3092048
-
Janse CJ, van der Klooster PF, van der Kaay HJ, van der Ploeg M, Overdulve JP. DNA synthesis in Plasmodium berghei during asexual and sexual development. Mol Biochem Parasitol 1986, 20:173-182. 10.1016/0166-6851(86)90029-0, 3092048.
-
(1986)
Mol Biochem Parasitol
, vol.20
, pp. 173-182
-
-
Janse, C.J.1
van der Klooster, P.F.2
van der Kaay, H.J.3
van der Ploeg, M.4
Overdulve, J.P.5
-
59
-
-
0022523762
-
Rapid repeated DNA replication during microgametogenesis and DNA synthesis in young zygotes of Plasmodium berghei
-
3088783
-
Janse CJ, Van der Klooster PF, Van der Kaay HJ, Van der Ploeg M, Overdulve JP. Rapid repeated DNA replication during microgametogenesis and DNA synthesis in young zygotes of Plasmodium berghei. Trans Roy Soc Trop Med Hyg 1986, 80:154-157. 10.1016/0035-9203(86)90219-1, 3088783.
-
(1986)
Trans Roy Soc Trop Med Hyg
, vol.80
, pp. 154-157
-
-
Janse, C.J.1
Van der Klooster, P.F.2
Van der Kaay, H.J.3
Van der Ploeg, M.4
Overdulve, J.P.5
-
60
-
-
77957762113
-
Active site mutations in mammalian DNA polymerase delta alter accuracy and replication fork progression
-
2952227, 20628184
-
Schmitt MW, Venkatesan RN, Pillaire MJ, Hoffmann JS, Sidorova JM, Loeb LA. Active site mutations in mammalian DNA polymerase delta alter accuracy and replication fork progression. J Biol Chem 2010, 285:32264-32272. 10.1074/jbc.M110.147017, 2952227, 20628184.
-
(2010)
J Biol Chem
, vol.285
, pp. 32264-32272
-
-
Schmitt, M.W.1
Venkatesan, R.N.2
Pillaire, M.J.3
Hoffmann, J.S.4
Sidorova, J.M.5
Loeb, L.A.6
|