-
1
-
-
84858682499
-
Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues
-
Gu T, Buaas FW, Simons AK, Ackert-Bicknell CL, Braun RE, Hibbs MA: Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues. PLoS One 2012, 7:e33720.
-
(2012)
PLoS One
, vol.7
-
-
Gu, T.1
Buaas, F.W.2
Simons, A.K.3
Ackert-Bicknell, C.L.4
Braun, R.E.5
Hibbs, M.A.6
-
2
-
-
84876364749
-
Limited RNA editing in exons of mouse liver and adipose
-
Lagarrigue S, Hormozdiari F, Martin LJ, Lecerf F, Hasin Y, Rau C, Hagopian R, Xiao Y, Yan J, Drake TA, Ghazalpour A, Eskin E, Lusis AJ: Limited RNA editing in exons of mouse liver and adipose. Genetics 2013, 193:1107-1115.
-
(2013)
Genetics
, vol.193
, pp. 1107-1115
-
-
Lagarrigue, S.1
Hormozdiari, F.2
Martin, L.J.3
Lecerf, F.4
Hasin, Y.5
Rau, C.6
Hagopian, R.7
Xiao, Y.8
Yan, J.9
Drake, T.A.10
Ghazalpour, A.11
Eskin, E.12
Lusis, A.J.13
-
3
-
-
84855320189
-
Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
-
Bahn JH, Lee JH, Li G, Greer C, Peng G, Xiao X: Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res 2012, 22:142-150.
-
(2012)
Genome Res
, vol.22
, pp. 142-150
-
-
Bahn, J.H.1
Lee, J.H.2
Li, G.3
Greer, C.4
Peng, G.5
Xiao, X.6
-
4
-
-
84859935298
-
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
-
Danecek P, Nellaker C, McIntyre RE, Buendia-Buendia JE, Bumpstead S, Ponting CP, Flint J, Durbin R, Keane TM, Adams DJ: High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biol 2012, 13:26.
-
(2012)
Genome Biol
, vol.13
, pp. 26
-
-
Danecek, P.1
Nellaker, C.2
McIntyre, R.E.3
Buendia-Buendia, J.E.4
Bumpstead, S.5
Ponting, C.P.6
Flint, J.7
Durbin, R.8
Keane, T.M.9
Adams, D.J.10
-
5
-
-
84863229628
-
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
-
Peng Z, Cheng Y, Tan BC, Kang L, Tian Z, Zhu Y, Zhang W, Liang Y, Hu X, Tan X, Guo J, Dong Z, Liang Y, Bao L, Wang J: Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome. Nat Biotechnol 2012, 30:253-260.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 253-260
-
-
Peng, Z.1
Cheng, Y.2
Tan, B.C.3
Kang, L.4
Tian, Z.5
Zhu, Y.6
Zhang, W.7
Liang, Y.8
Hu, X.9
Tan, X.10
Guo, J.11
Dong, Z.12
Liang, Y.13
Bao, L.14
Wang, J.15
-
6
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
7
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura K: Functions and regulation of RNA editing by ADAR deaminases. Annu Rev Biochem 2010, 79:321-349.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
8
-
-
84860381586
-
Functions and regulation of the APOBEC family of proteins
-
Smith HC, Bennett RP, Kizilyer A, McDougall WM, Prohaska KM: Functions and regulation of the APOBEC family of proteins. Semin Cell Dev Biol 2012, 23:258-268.
-
(2012)
Semin Cell Dev Biol
, vol.23
, pp. 258-268
-
-
Smith, H.C.1
Bennett, R.P.2
Kizilyer, A.3
McDougall, W.M.4
Prohaska, K.M.5
-
9
-
-
84855479746
-
Mouse and other rodent models of C to U RNA editing
-
Blanc V, Davidson NO: Mouse and other rodent models of C to U RNA editing. Methods Mol Biol 2011, 718:121-135.
-
(2011)
Methods Mol Biol
, vol.718
, pp. 121-135
-
-
Blanc, V.1
Davidson, N.O.2
-
10
-
-
33846122238
-
ApoB mRNA editing is mediated by a coordinated modulation of multiple apoB mRNA editing enzyme components
-
Chen Z, Eggerman TL, Patterson AP: ApoB mRNA editing is mediated by a coordinated modulation of multiple apoB mRNA editing enzyme components. Am J Physiol Gastrointest Liver Physiol 2007, 292:G53-G65.
-
(2007)
Am J Physiol Gastrointest Liver Physiol
, vol.292
, pp. G53-G65
-
-
Chen, Z.1
Eggerman, T.L.2
Patterson, A.P.3
-
11
-
-
0034733528
-
Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex
-
Lellek H, Kirsten R, Diehl I, Apostel F, Buck F, Greeve J: Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex. J Biol Chem 2000, 275:19848-19856.
-
(2000)
J Biol Chem
, vol.275
, pp. 19848-19856
-
-
Lellek, H.1
Kirsten, R.2
Diehl, I.3
Apostel, F.4
Buck, F.5
Greeve, J.6
-
12
-
-
0033970066
-
Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA
-
Mehta A, Kinter MT, Sherman NE, Driscoll DM: Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA. Mol Cell Biol 2000, 20:1846-1854.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 1846-1854
-
-
Mehta, A.1
Kinter, M.T.2
Sherman, N.E.3
Driscoll, D.M.4
-
14
-
-
0026343884
-
Apolipoprotein B mRNA sequences 3' of the editing site are necessary and sufficient for editing and editosome assembly
-
Backus JW, Smith HC: Apolipoprotein B mRNA sequences 3' of the editing site are necessary and sufficient for editing and editosome assembly. Nucleic Acids Res 1991, 19:6781-6786.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6781-6786
-
-
Backus, J.W.1
Smith, H.C.2
-
15
-
-
84869013037
-
Intestine-specific expression of Apobec-1 rescues apolipoprotein B RNA editing and alters chylomicron production in Apobec1(-)/(-) mice
-
Blanc V, Xie Y, Luo J, Kennedy S, Davidson NO: Intestine-specific expression of Apobec-1 rescues apolipoprotein B RNA editing and alters chylomicron production in Apobec1(-)/(-) mice. J Lipid Res 2012, 53:2643-2655.
-
(2012)
J Lipid Res
, vol.53
, pp. 2643-2655
-
-
Blanc, V.1
Xie, Y.2
Luo, J.3
Kennedy, S.4
Davidson, N.O.5
-
16
-
-
79551638596
-
Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs
-
Rosenberg BR, Hamilton CE, Mwangi MM, Dewell S, Papavasiliou FN: Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs. Nat Struct Mol Biol 2011, 18:230-236.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 230-236
-
-
Rosenberg, B.R.1
Hamilton, C.E.2
Mwangi, M.M.3
Dewell, S.4
Papavasiliou, F.N.5
-
17
-
-
80455126001
-
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems
-
Minoche AE, Dohm JC, Himmelbauer H: Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems. Genome Biol 2011, 12:R112.
-
(2011)
Genome Biol
, vol.12
-
-
Minoche, A.E.1
Dohm, J.C.2
Himmelbauer, H.3
-
18
-
-
0029159759
-
Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals
-
Yamanaka S, Balestra ME, Ferrell LD, Fan J, Arnold KS, Taylor S, Taylor JM, Innerarity TL: Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals. Proc Natl Acad Sci U S A 1995, 92:8483-8487.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 8483-8487
-
-
Yamanaka, S.1
Balestra, M.E.2
Ferrell, L.D.3
Fan, J.4
Arnold, K.S.5
Taylor, S.6
Taylor, J.M.7
Innerarity, T.L.8
-
19
-
-
0031048641
-
A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme
-
Yamanaka S, Poksay KS, Arnold KS, Innerarity TL: A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme. Genes Dev 1997, 11:321-333.
-
(1997)
Genes Dev
, vol.11
, pp. 321-333
-
-
Yamanaka, S.1
Poksay, K.S.2
Arnold, K.S.3
Innerarity, T.L.4
-
20
-
-
0025749693
-
Apolipoprotein B mRNA editing is an intranuclear event that occurs posttranscriptionally coincident with splicing and polyadenylation
-
Lau PP, Xiong WJ, Zhu HJ, Chen SH, Chan L: Apolipoprotein B mRNA editing is an intranuclear event that occurs posttranscriptionally coincident with splicing and polyadenylation. J Biol Chem 1991, 266:20550-20554.
-
(1991)
J Biol Chem
, vol.266
, pp. 20550-20554
-
-
Lau, P.P.1
Xiong, W.J.2
Zhu, H.J.3
Chen, S.H.4
Chan, L.5
-
21
-
-
70450194801
-
Adenosine deamination in human transcripts generates novel microRNA binding sites
-
Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL: Adenosine deamination in human transcripts generates novel microRNA binding sites. Hum Mol Genet 2009, 18:4801-4807.
-
(2009)
Hum Mol Genet
, vol.18
, pp. 4801-4807
-
-
Borchert, G.M.1
Gilmore, B.L.2
Spengler, R.M.3
Xing, Y.4
Lanier, W.5
Bhattacharya, D.6
Davidson, B.L.7
-
22
-
-
84880360716
-
Characterization and comparison of human nuclear and cytosolic editomes
-
Chen L: Characterization and comparison of human nuclear and cytosolic editomes. Proc Natl Acad Sci U S A 2013, 110:E2741-E2747.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E2741-E2747
-
-
Chen, L.1
-
23
-
-
84865858631
-
RNA editing in the human ENCODE RNA-seq data
-
Park E, Williams B, Wold BJ, Mortazavi A: RNA editing in the human ENCODE RNA-seq data. Genome Res 2012, 22:1626-1633.
-
(2012)
Genome Res
, vol.22
, pp. 1626-1633
-
-
Park, E.1
Williams, B.2
Wold, B.J.3
Mortazavi, A.4
-
24
-
-
0041524056
-
The apolipoprotein B mRNA editing complex performs a multifunctional cycle and suppresses nonsense-mediated decay
-
Chester A, Somasekaram A, Tzimina M, Jarmuz A, Gisbourne J, O'Keefe R, Scott J, Navaratnam N: The apolipoprotein B mRNA editing complex performs a multifunctional cycle and suppresses nonsense-mediated decay. EMBO J 2003, 22:3971-3982.
-
(2003)
EMBO J
, vol.22
, pp. 3971-3982
-
-
Chester, A.1
Somasekaram, A.2
Tzimina, M.3
Jarmuz, A.4
Gisbourne, J.5
O'Keefe, R.6
Scott, J.7
Navaratnam, N.8
-
25
-
-
0035824516
-
Mutagenesis of apobec-1 complementation factor reveals distinct domains that modulate RNA binding, protein-protein interaction with apobec-1, and complementation of C to U RNA-editing activity
-
Blanc V, Henderson JO, Kennedy S, Davidson NO: Mutagenesis of apobec-1 complementation factor reveals distinct domains that modulate RNA binding, protein-protein interaction with apobec-1, and complementation of C to U RNA-editing activity. J Biol Chem 2001, 276:46386-46393.
-
(2001)
J Biol Chem
, vol.276
, pp. 46386-46393
-
-
Blanc, V.1
Henderson, J.O.2
Kennedy, S.3
Davidson, N.O.4
-
26
-
-
0035943347
-
The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs
-
Zhang Z, Carmichael GG: The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs. Cell 2001, 106:465-475.
-
(2001)
Cell
, vol.106
, pp. 465-475
-
-
Zhang, Z.1
Carmichael, G.G.2
-
27
-
-
52949140596
-
elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes.
-
Hundley HA, Krauchuk AA, Bass BL: C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes. RNA 2008, 14:2050-2060.
-
(2008)
RNA
, vol.14
, pp. 2050-2060
-
-
Hundley, H.A.1
Krauchuk, A.A.2
Bass, B.L.3
-
28
-
-
84887476291
-
Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
-
St Laurent G, Tackett MR, Nechkin S, Shtokalo D, Antonets D, Savva YA, Maloney R, Kapranov P, Lawrence CE, Reenan RA: Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila. Nat Struct Mol Biol 2013, 20:1333-1339.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 1333-1339
-
-
St Laurent, G.1
Tackett, M.R.2
Nechkin, S.3
Shtokalo, D.4
Antonets, D.5
Savva, Y.A.6
Maloney, R.7
Kapranov, P.8
Lawrence, C.E.9
Reenan, R.A.10
-
29
-
-
54949148332
-
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
-
Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO: Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol 2008, 6:e255.
-
(2008)
PLoS Biol
, vol.6
-
-
Hogan, D.J.1
Riordan, D.P.2
Gerber, A.P.3
Herschlag, D.4
Brown, P.O.5
-
30
-
-
79952345257
-
Involvement of riboflavin kinase expression in cellular sensitivity against cisplatin
-
Hirano G, Izumi H, Yasuniwa Y, Shimajiri S, Ke-Yong W, Sasagiri Y, Kusaba H, Matsumoto K, Hasegawa T, Akimoto M, Akashi K, Kohno K: Involvement of riboflavin kinase expression in cellular sensitivity against cisplatin. Int J Oncol 2011, 38:893-902.
-
(2011)
Int J Oncol
, vol.38
, pp. 893-902
-
-
Hirano, G.1
Izumi, H.2
Yasuniwa, Y.3
Shimajiri, S.4
Ke-Yong, W.5
Sasagiri, Y.6
Kusaba, H.7
Matsumoto, K.8
Hasegawa, T.9
Akimoto, M.10
Akashi, K.11
Kohno, K.12
-
31
-
-
57049162405
-
Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice
-
Segditsas S, Sieber O, Deheragoda M, East P, Rowan A, Jeffery R, Nye E, Clark S, Spencer-Dene B, Stamp G, Poulsom R, Suraweera N, Silver A, Ilyas M, Tomlinson I: Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice. Hum Mol Genet 2008, 17:3864-3875.
-
(2008)
Hum Mol Genet
, vol.17
, pp. 3864-3875
-
-
Segditsas, S.1
Sieber, O.2
Deheragoda, M.3
East, P.4
Rowan, A.5
Jeffery, R.6
Nye, E.7
Clark, S.8
Spencer-Dene, B.9
Stamp, G.10
Poulsom, R.11
Suraweera, N.12
Silver, A.13
Ilyas, M.14
Tomlinson, I.15
-
32
-
-
34547792015
-
Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa
-
Bianchini M, Levy E, Zucchini C, Pinski V, Macagno C, De Sanctis P, Valvassori L, Carinci P, Mordoh J: Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa. Int J Oncol 2006, 29:83-94.
-
(2006)
Int J Oncol
, vol.29
, pp. 83-94
-
-
Bianchini, M.1
Levy, E.2
Zucchini, C.3
Pinski, V.4
Macagno, C.5
De Sanctis, P.6
Valvassori, L.7
Carinci, P.8
Mordoh, J.9
-
33
-
-
0035901942
-
The TES gene at 7q31.1 is methylated in tumours and encodes a novel growth-suppressing LIM domain protein
-
Tobias ES, Hurlstone AF, MacKenzie E, McFarlane R, Black DM: The TES gene at 7q31.1 is methylated in tumours and encodes a novel growth-suppressing LIM domain protein. Oncogene 2001, 20:2844-2853.
-
(2001)
Oncogene
, vol.20
, pp. 2844-2853
-
-
Tobias, E.S.1
Hurlstone, A.F.2
MacKenzie, E.3
McFarlane, R.4
Black, D.M.5
-
34
-
-
70449727864
-
Indoleamine 2,3-dioxygenase in intestinal immunity and inflammation
-
Cherayil BJ: Indoleamine 2,3-dioxygenase in intestinal immunity and inflammation. Inflamm Bowel Dis 2009, 15:1391-1396.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 1391-1396
-
-
Cherayil, B.J.1
-
35
-
-
73149104650
-
Sulindac sulfide selectively inhibits growth and induces apoptosis of human breast tumor cells by phosphodiesterase 5 inhibition, elevation of cyclic GMP, and activation of protein kinase G
-
Tinsley HN, Gary BD, Keeton AB, Zhang W, Abadi AH, Reynolds RC, Piazza GA: Sulindac sulfide selectively inhibits growth and induces apoptosis of human breast tumor cells by phosphodiesterase 5 inhibition, elevation of cyclic GMP, and activation of protein kinase G. Mol Cancer Ther 2009, 8:3331-3340.
-
(2009)
Mol Cancer Ther
, vol.8
, pp. 3331-3340
-
-
Tinsley, H.N.1
Gary, B.D.2
Keeton, A.B.3
Zhang, W.4
Abadi, A.H.5
Reynolds, R.C.6
Piazza, G.A.7
-
36
-
-
34548742994
-
Deletion of the AU-rich RNA binding protein Apobec-1 reduces intestinal tumor burden in Apc(min) mice
-
Blanc V, Henderson JO, Newberry RD, Xie Y, Cho SJ, Newberry EP, Kennedy S, Rubin DC, Wang HL, Luo J, Davidson NO: Deletion of the AU-rich RNA binding protein Apobec-1 reduces intestinal tumor burden in Apc(min) mice. Cancer Res 2007, 67:8565-8573.
-
(2007)
Cancer Res
, vol.67
, pp. 8565-8573
-
-
Blanc, V.1
Henderson, J.O.2
Newberry, R.D.3
Xie, Y.4
Cho, S.J.5
Newberry, E.P.6
Kennedy, S.7
Rubin, D.C.8
Wang, H.L.9
Luo, J.10
Davidson, N.O.11
-
37
-
-
84879047439
-
Contrasting effects of Deadend1 (Dnd1) gain and loss of function mutations on allelic inheritance, testicular cancer, and intestinal polyposis
-
Zechel JL, Doerner SK, Lager A, Tesar PJ, Heaney JD, Nadeau JH: Contrasting effects of Deadend1 (Dnd1) gain and loss of function mutations on allelic inheritance, testicular cancer, and intestinal polyposis. BMC Genet 2013, 14:54.
-
(2013)
BMC Genet
, vol.14
, pp. 54
-
-
Zechel, J.L.1
Doerner, S.K.2
Lager, A.3
Tesar, P.J.4
Heaney, J.D.5
Nadeau, J.H.6
-
38
-
-
44649093928
-
PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression
-
den Bosch HM DV-v, Bunger M, de Groot PJ, Bosch-Vermeulen H, Hooiveld GJ, Muller M: PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression. BMC Genomics 2008, 9:231.
-
(2008)
BMC Genomics
, vol.9
, pp. 231
-
-
den Bosch H.M, D.V.-V.1
Bunger, M.2
de Groot, P.J.3
Bosch-Vermeulen, H.4
Hooiveld, G.J.5
Muller, M.6
-
39
-
-
0037123667
-
Vitamin D receptor as an intestinal bile acid sensor
-
Makishima M, Lu TT, Xie W, Whitfield GK, Domoto H, Evans RM, Haussler MR, Mangelsdorf DJ: Vitamin D receptor as an intestinal bile acid sensor. Science 2002, 296:1313-1316.
-
(2002)
Science
, vol.296
, pp. 1313-1316
-
-
Makishima, M.1
Lu, T.T.2
Xie, W.3
Whitfield, G.K.4
Domoto, H.5
Evans, R.M.6
Haussler, M.R.7
Mangelsdorf, D.J.8
-
40
-
-
2642538416
-
Inflammation of the cystic fibrosis mouse small intestine
-
Norkina O, Kaur S, Ziemer D, De Lisle RC: Inflammation of the cystic fibrosis mouse small intestine. Am J Physiol Gastrointest Liver Physiol 2004, 286:G1032-G1041.
-
(2004)
Am J Physiol Gastrointest Liver Physiol
, vol.286
, pp. G1032-G1041
-
-
Norkina, O.1
Kaur, S.2
Ziemer, D.3
De Lisle, R.C.4
-
41
-
-
18244393432
-
CD36 deficiency impairs intestinal lipid secretion and clearance of chylomicrons from the blood
-
Drover VA, Ajmal M, Nassir F, Davidson NO, Nauli AM, Sahoo D, Tso P, Abumrad NA: CD36 deficiency impairs intestinal lipid secretion and clearance of chylomicrons from the blood. J Clin Invest 2005, 115:1290-1297.
-
(2005)
J Clin Invest
, vol.115
, pp. 1290-1297
-
-
Drover, V.A.1
Ajmal, M.2
Nassir, F.3
Davidson, N.O.4
Nauli, A.M.5
Sahoo, D.6
Tso, P.7
Abumrad, N.A.8
-
42
-
-
70350131063
-
Enhancing non-coding RNA information content with ADAR editing
-
St Laurent G 3rd, Savva YA, Reenan R: Enhancing non-coding RNA information content with ADAR editing. Neurosci Lett 2009, 466:89-98.
-
(2009)
Neurosci Lett
, vol.466
, pp. 89-98
-
-
St Laurent I.I.I, G.1
Savva, Y.A.2
Reenan, R.3
-
43
-
-
84912131038
-
-
EMBL-EBI: ProteomeExchange
-
EMBL-EBI: ProteomeExchange. [http://www.proteomexchange.org/]
-
-
-
-
44
-
-
84891796097
-
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
-
Vizcaino JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Rios D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HU, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H: ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat Biotechnol 2014, 32:223-226.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 223-226
-
-
Vizcaino, J.A.1
Deutsch, E.W.2
Wang, R.3
Csordas, A.4
Reisinger, F.5
Rios, D.6
Dianes, J.A.7
Sun, Z.8
Farrah, T.9
Bandeira, N.10
Binz, P.A.11
Xenarios, I.12
Eisenacher, M.13
Mayer, G.14
Gatto, L.15
Campos, A.16
Chalkley, R.J.17
Kraus, H.U.18
Albar, J.P.19
Martinez-Bartolomé, S.20
Apweiler, R.21
Omenn, G.S.22
Martens, L.23
Jones, A.R.24
Hermjakob, H.25
more..
-
45
-
-
79959829720
-
Widespread RNA and DNA sequence differences in the human transcriptome
-
Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG: Widespread RNA and DNA sequence differences in the human transcriptome. Science 2011, 333:53-58.
-
(2011)
Science
, vol.333
, pp. 53-58
-
-
Li, M.1
Wang, I.X.2
Li, Y.3
Bruzel, A.4
Richards, A.L.5
Toung, J.M.6
Cheung, V.G.7
-
46
-
-
78649252806
-
Effect of alpha4beta7 blockade on intestinal lymphocyte subsets and lymphoid tissue development
-
Wang C, Hanly EK, Wheeler LW, Kaur M, McDonald KG, Newberry RD: Effect of alpha4beta7 blockade on intestinal lymphocyte subsets and lymphoid tissue development. Inflamm Bowel Dis 2010, 16:1751-1762.
-
(2010)
Inflamm Bowel Dis
, vol.16
, pp. 1751-1762
-
-
Wang, C.1
Hanly, E.K.2
Wheeler, L.W.3
Kaur, M.4
McDonald, K.G.5
Newberry, R.D.6
-
47
-
-
77049113847
-
Crude subcellular fractionation of cultured mammalian cell lines
-
Holden P, Horton WA: Crude subcellular fractionation of cultured mammalian cell lines. BMC Res Notes 2009, 2:243.
-
(2009)
BMC Res Notes
, vol.2
, pp. 243
-
-
Holden, P.1
Horton, W.A.2
-
48
-
-
84879965225
-
Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture
-
Liberski AR, Al-Noubi MN, Rahman ZH, Halabi NM, Dib SS, Al-Mismar R, Billing AM, Krishnankutty R, Ahmad FS, Raynaud CM, Rafii A, Engholm-Keller K, Graumann J: Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture. J Proteome Res 2013, 12:3233-3245.
-
(2013)
J Proteome Res
, vol.12
, pp. 3233-3245
-
-
Liberski, A.R.1
Al-Noubi, M.N.2
Rahman, Z.H.3
Halabi, N.M.4
Dib, S.S.5
Al-Mismar, R.6
Billing, A.M.7
Krishnankutty, R.8
Ahmad, F.S.9
Raynaud, C.M.10
Rafii, A.11
Engholm-Keller, K.12
Graumann, J.13
-
49
-
-
0037317228
-
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
-
Rappsilber J, Ishihama Y, Mann M: Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 2003, 75:663-670.
-
(2003)
Anal Chem
, vol.75
, pp. 663-670
-
-
Rappsilber, J.1
Ishihama, Y.2
Mann, M.3
-
50
-
-
84912065582
-
-
The R Project for Statistical Computing
-
The R Project for Statistical Computing. [http://www.r-project.org/index. html]
-
-
-
-
51
-
-
84912109366
-
-
WebLogo
-
WebLogo. [http://weblogo.berkeley.edu/]
-
-
-
-
52
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE: WebLogo: a sequence logo generator. Genome Res 2004, 14:1188-1190.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
53
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, GoffL, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012, 7:562-578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
54
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
55
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010, 28:511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
|