-
2
-
-
84872308285
-
In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB
-
Arora V, Iquebal MA, Rai A, Kumar D (2013) In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB. BMC Genomics 14: 43.
-
(2013)
BMC Genomics
, vol.14
, pp. 43
-
-
Arora, V.1
Iquebal, M.A.2
Rai, A.3
Kumar, D.4
-
3
-
-
0032953314
-
Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome
-
Bachtrog D, Weiss S, Zangerl B, Brem G, Schlötterer C (1999) Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome. Mol Biol Evol 16: 602-610.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 602-610
-
-
Bachtrog, D.1
Weiss, S.2
Zangerl, B.3
Brem, G.4
Schlötterer, C.5
-
4
-
-
0033914059
-
Modulation of EGFR gene transcription by secondary structures, a polymorphic repetitive sequence and mutations-a link between genetics and epigenetics
-
Brandt B, Gebhardt F, Bürger H (2000) Modulation of EGFR gene transcription by secondary structures, a polymorphic repetitive sequence and mutations-a link between genetics and epigenetics. Histol Histopathol 15: 929-936.
-
(2000)
Histol Histopathol
, vol.15
, pp. 929-936
-
-
Brandt, B.1
Gebhardt, F.2
Bürger, H.3
-
5
-
-
0020480338
-
Simple DNA sequences in homologous flanking regions near immunoglobulin VH genes: a role in gene interaction?
-
Cohen JB, Effron K, Rechavi G, Ben-Neriah Y, Zakut R, Givol D (1982) Simple DNA sequences in homologous flanking regions near immunoglobulin VH genes: a role in gene interaction? Nucleic Acids Res 10: 3353-3370.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 3353-3370
-
-
Cohen, J.B.1
Effron, K.2
Rechavi, G.3
Ben-Neriah, Y.4
Zakut, R.5
Givol, D.6
-
6
-
-
0021100483
-
A chicken repetitive DNA sequence that is highly sensitive to single-strand specific endonucleases
-
Dybvig K, Clark CD, Aliperti G, Schlesinger MJ (1983) A chicken repetitive DNA sequence that is highly sensitive to single-strand specific endonucleases. Nucleic Acids Res 11: 8495-8508.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 8495-8508
-
-
Dybvig, K.1
Clark, C.D.2
Aliperti, G.3
Schlesinger, M.J.4
-
7
-
-
0032539711
-
Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces
-
Field D, Wills C (1998) Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. PNAS 95: 1647-1652.
-
(1998)
Pnas
, vol.95
, pp. 1647-1652
-
-
Field, D.1
Wills, C.2
-
8
-
-
0040886242
-
Modulation of epidermal growth factor receptor gene transcription by a polymorphic dinucleotide repeat in intron 1
-
Gebhardt F, Zänker KS, Brandt B (1999) Modulation of epidermal growth factor receptor gene transcription by a polymorphic dinucleotide repeat in intron 1. J Biol Chem 274: 13176-13180.
-
(1999)
J Biol Chem
, vol.274
, pp. 13176-13180
-
-
Gebhardt, F.1
Zänker, K.S.2
Brandt, B.3
-
9
-
-
0036021704
-
Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects
-
Hancock JM (2002) Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects. Genetica 115: 93-103.
-
(2002)
Genetica
, vol.115
, pp. 93-103
-
-
Hancock, J.M.1
-
10
-
-
84869141268
-
Use of comparative genomics to develop EST-SSRs for red drum (Sciaenops ocellatus)
-
Hollenbeck CM, Portnoy DS, Gold JR (2012) Use of comparative genomics to develop EST-SSRs for red drum (Sciaenops ocellatus). Mar Biotechnol 14: 672-680.
-
(2012)
Mar Biotechnol
, vol.14
, pp. 672-680
-
-
Hollenbeck, C.M.1
Portnoy, D.S.2
Gold, J.R.3
-
11
-
-
0028952245
-
Simple repetitive DNA sequences from primates: compilation and analysis
-
Jurka J, Pethiyagoda C (1995) Simple repetitive DNA sequences from primates: compilation and analysis. J Mol Evol 40: 120-126.
-
(1995)
J Mol Evol
, vol.40
, pp. 120-126
-
-
Jurka, J.1
Pethiyagoda, C.2
-
12
-
-
14544279926
-
Survey of simple sequence repeats in completed fungal genomes
-
Karaoglu H, Lee CMY, Meyer W (2005) Survey of simple sequence repeats in completed fungal genomes. Mol Biol Evol 22: 639-649.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 639-649
-
-
Karaoglu, H.1
Lee, C.M.Y.2
Meyer, W.3
-
13
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin S, Mrazek J, Campbell AM (1997) Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol 179: 3899-3913.
-
(1997)
J Bacteriol
, vol.179
, pp. 3899-3913
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
14
-
-
0034946803
-
Differential distribution of simple sequence repeats in eukaryotic genome sequences
-
Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18: 1161-1167.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1161-1167
-
-
Katti, M.V.1
Ranjekar, P.K.2
Gupta, V.S.3
-
15
-
-
34547852208
-
SciRoKo: a new tool for whole genome microsatellite search and investigation
-
Kofler R, Schlötterer C, Lelley T (2007) SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics 23: 1683-1685.
-
(2007)
Bioinformatics
, vol.23
, pp. 1683-1685
-
-
Kofler, R.1
Schlötterer, C.2
Lelley, T.3
-
16
-
-
25444467752
-
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
-
La Rota M, Kantety RV, Yu J-K, Sorrells ME (2005) Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 6: 23.
-
(2005)
BMC Genomics
, vol.6
, pp. 23
-
-
La Rota, M.1
Kantety, R.V.2
Yu, J.-K.3
Sorrells, M.E.4
-
17
-
-
33745033519
-
Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
-
Lawson MJ, Zhang L (2006) Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biol 7: R14.
-
(2006)
Genome Biol
, vol.7
-
-
Lawson, M.J.1
Zhang, L.2
-
18
-
-
0036897944
-
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
-
Li YC, Korol AB, Fahima T, Beiles A, Nevo E (2002) Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol 11: 2453-2465.
-
(2002)
Mol Ecol
, vol.11
, pp. 2453-2465
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
19
-
-
2442701496
-
Microsatellites within genes: Structure, function, and evolution
-
Li Y-C, Korol AB, Fahima T, Nevo E (2004) Microsatellites within genes: Structure, function, and evolution. Mol Biol Evol 21: 991-1007.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 991-1007
-
-
Li, Y.-C.1
Korol, A.B.2
Fahima, T.3
Nevo, E.4
-
20
-
-
84857235581
-
A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the three-spined stickleback (Gasterosteus aculeatus)
-
Liu S, Rexroad CE III, Couch CR, Cordes JF, Reece KS, Sullivan CV (2012) A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the three-spined stickleback (Gasterosteus aculeatus). Mar Biotechnol 14: 237-244.
-
(2012)
Mar Biotechnol
, vol.14
, pp. 237-244
-
-
Liu, S.1
Rexroad III, C.E.2
Couch, C.R.3
Cordes, J.F.4
Reece, K.S.5
Sullivan, C.V.6
-
21
-
-
77951586434
-
Genome-wide analysis of tandem repeats in Daphnia pulex-a comparative approach
-
Mayer C, Leese F, Tollrian R (2010) Genome-wide analysis of tandem repeats in Daphnia pulex-a comparative approach. BMC Genomics 11: 277.
-
(2010)
BMC Genomics
, vol.11
, pp. 277
-
-
Mayer, C.1
Leese, F.2
Tollrian, R.3
-
22
-
-
0031886282
-
A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro
-
Meloni R, Albanèse V, Ravassard P, Treilhou F, Mallet J (1998) A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro. Hum Mol Genet 7: 423-428.
-
(1998)
Hum Mol Genet
, vol.7
, pp. 423-428
-
-
Meloni, R.1
Albanèse, V.2
Ravassard, P.3
Treilhou, F.4
Mallet, J.5
-
23
-
-
84860143072
-
What can we learn from genomics approaches in marine ecology? From sequences to eco-systems biology!
-
Mock T, Kirkham A (2012) What can we learn from genomics approaches in marine ecology? From sequences to eco-systems biology! Mar Ecol 33: 131-148.
-
(2012)
Mar Ecol
, vol.33
, pp. 131-148
-
-
Mock, T.1
Kirkham, A.2
-
24
-
-
0036478903
-
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
-
Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30: 194-200.
-
(2002)
Nat Genet
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Hanafey, M.2
Powell, W.3
-
25
-
-
0028065674
-
Adaptive evolution of highly mutable loci in pathogenic bacteria
-
Moxon ER, Rainey PB, Nowak MA, Lenski RE (1994) Adaptive evolution of highly mutable loci in pathogenic bacteria. Curr Biol 4: 24-33.
-
(1994)
Curr Biol
, vol.4
, pp. 24-33
-
-
Moxon, E.R.1
Rainey, P.B.2
Nowak, M.A.3
Lenski, R.E.4
-
26
-
-
3042791093
-
Bauplan of urmetazoa: basis for genetic complexity of metazoa
-
Müller WE, Wiens M, Adell T, Gamulin V, Schröder HC, Müller IM (2004) Bauplan of urmetazoa: basis for genetic complexity of metazoa. Int Rev Cytol 235: 53-92.
-
(2004)
Int Rev Cytol
, vol.235
, pp. 53-92
-
-
Müller, W.E.1
Wiens, M.2
Adell, T.3
Gamulin, V.4
Schröder, H.C.5
Müller, I.M.6
-
27
-
-
27644514554
-
Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy
-
Pérez F, Ortiz J, Zhinaula M, Gonzabay C, Calderón J, Volckaert FA (2005) Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy. Mar Biotechnol 7: 554-569.
-
(2005)
Mar Biotechnol
, vol.7
, pp. 554-569
-
-
Pérez, F.1
Ortiz, J.2
Zhinaula, M.3
Gonzabay, C.4
Calderón, J.5
Volckaert, F.A.6
-
28
-
-
0029073687
-
Microsatellite evolution-evidence for directionality and variation in rate between species
-
Rubinsztein DC, Amos W, Leggo J, Goodburn S, Jain S, Li S-H, Margolis RL, Ross CA, Ferguson-Smith MA (1995) Microsatellite evolution-evidence for directionality and variation in rate between species. Nat Genet 10: 337-343.
-
(1995)
Nat Genet
, vol.10
, pp. 337-343
-
-
Rubinsztein, D.C.1
Amos, W.2
Leggo, J.3
Goodburn, S.4
Jain, S.5
Li, S.-H.6
Margolis, R.L.7
Ross, C.A.8
Ferguson-Smith, M.A.9
-
29
-
-
0033808899
-
Evolutionary dynamics of microsatellite DNA
-
Schlötterer C (2000) Evolutionary dynamics of microsatellite DNA. Chromosoma 109: 365-371.
-
(2000)
Chromosoma
, vol.109
, pp. 365-371
-
-
Schlötterer, C.1
-
30
-
-
0031029760
-
Low mutation rates of microsatellite loci in Drosophila melanogaster
-
Schug MD, Mackay TF, Aquadro CF (1997) Low mutation rates of microsatellite loci in Drosophila melanogaster. Nat Genet 15: 99-102.
-
(1997)
Nat Genet
, vol.15
, pp. 99-102
-
-
Schug, M.D.1
Mackay, T.F.2
Aquadro, C.F.3
-
31
-
-
77955490196
-
The Amphimedon queenslandica genome and the evolution of animal complexity
-
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466: 720-726.
-
(2010)
Nature
, vol.466
, pp. 720-726
-
-
Srivastava, M.1
Simakov, O.2
Chapman, J.3
Fahey, B.4
Gauthier, M.E.5
Mitros, T.6
Richards, G.S.7
Conaco, C.8
Dacre, M.9
Hellsten, U.10
-
32
-
-
0037268258
-
Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions
-
Subramanian S, Mishra RK, Singh L (2003) Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions. Genome Biol 4: R13.
-
(2003)
Genome Biol
, vol.4
-
-
Subramanian, S.1
Mishra, R.K.2
Singh, L.3
-
33
-
-
84874116812
-
The molecular evolution of the Pif family proteins in various species of mollusks
-
Suzuki M, Iwashima A, Kimura M, Kogure T, Nagasawa H (2013) The molecular evolution of the Pif family proteins in various species of mollusks. Mar Biotechnol 15: 145-158.
-
(2013)
Mar Biotechnol
, vol.15
, pp. 145-158
-
-
Suzuki, M.1
Iwashima, A.2
Kimura, M.3
Kogure, T.4
Nagasawa, H.5
-
34
-
-
0022533981
-
Cryptic simplicity in DNA is a major source of genetic variation
-
Tautz D, Trick M, Dover GA (1986) Cryptic simplicity in DNA is a major source of genetic variation. Nature 322: 652-656.
-
(1986)
Nature
, vol.322
, pp. 652-656
-
-
Tautz, D.1
Trick, M.2
Dover, G.A.3
-
35
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: Survey and analysis
-
Tóth G, Gáspári Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 10: 967-981.
-
(2000)
Genome Res
, vol.10
, pp. 967-981
-
-
Tóth, G.1
Gáspári, Z.2
Jurka, J.3
-
37
-
-
33746718089
-
Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites
-
von Stackelberg M, Rensing SA, Reski R (2006) Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol 6: 9.
-
(2006)
BMC Plant Biol
, vol.6
, pp. 9
-
-
von Stackelberg, M.1
Rensing, S.A.2
Reski, R.3
-
38
-
-
77950829471
-
Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome
-
Wang S, Zhang L, Meyer E, Bao Z (2010) Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome. Biol Direct 5: 18-26.
-
(2010)
Biol Direct
, vol.5
, pp. 18-26
-
-
Wang, S.1
Zhang, L.2
Meyer, E.3
Bao, Z.4
-
39
-
-
0027161022
-
Mutation of human short tandem repeats
-
Weber JL, Wong C (1993) Mutation of human short tandem repeats. Hum Mol Genet 2: 1123-1128.
-
(1993)
Hum Mol Genet
, vol.2
, pp. 1123-1128
-
-
Weber, J.L.1
Wong, C.2
-
40
-
-
0037173031
-
Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments
-
Webster MT, Smith NG, Ellegren H (2002) Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments. PNAS 99: 8748-8753.
-
(2002)
Pnas
, vol.99
, pp. 8748-8753
-
-
Webster, M.T.1
Smith, N.G.2
Ellegren, H.3
-
41
-
-
0024369996
-
Site-specific location of covalent DNA-polypeptide complexes in the chicken genome
-
Werner D, Neuer-Nitsche B (1989) Site-specific location of covalent DNA-polypeptide complexes in the chicken genome. Nucleic Acids Res 17: 6005-6015.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 6005-6015
-
-
Werner, D.1
Neuer-Nitsche, B.2
-
42
-
-
0034111151
-
The direction of microsatellite mutations is dependent upon allele length
-
Xu X, Peng M, Fang Z, Xu X (2000) The direction of microsatellite mutations is dependent upon allele length. Nat Genet 24: 396-399.
-
(2000)
Nat Genet
, vol.24
, pp. 396-399
-
-
Xu, X.1
Peng, M.2
Fang, Z.3
Xu, X.4
-
43
-
-
33747846582
-
WEGO: a web tool for plotting GO annotations
-
Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L (2006) WEGO: a web tool for plotting GO annotations. Nucleic Acids Res 34: W293-W297.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Ye, J.1
Fang, L.2
Zheng, H.3
Zhang, Y.4
Chen, J.5
Zhang, Z.6
Wang, J.7
Li, S.8
Li, R.9
Bolund, L.10
-
44
-
-
0034049112
-
Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae
-
Young ET, Sloan JS, van Riper K (2000) Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae. Genetics 154: 1053-1068.
-
(2000)
Genetics
, vol.154
, pp. 1053-1068
-
-
Young, E.T.1
Sloan, J.S.2
van Riper, K.3
|