메뉴 건너뛰기




Volumn 7, Issue 2, 2006, Pages

Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; NUCLEOTIDE; TRINUCLEOTIDE; ARABIDOPSIS PROTEIN; VEGETABLE PROTEIN;

EID: 33745033519     PISSN: 1474760X     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2006-7-2-r14     Document Type: Article
Times cited : (214)

References (35)
  • 1
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: Structure, function, and evolution
    • Li YC, Korol AB, Fahima T, Nevo E: Microsatellites within genes: Structure, function, and evolution. Mol Biol Evol 2004, 21:991-1007.
    • (2004) Mol Biol Evol , vol.21 , pp. 991-1007
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 2
    • 0029983147 scopus 로고    scopus 로고
    • Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development
    • Karlin S, Burge C: Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development. Proc Natl Acad Sci USA 1996, 93:1560-1565.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 1560-1565
    • Karlin, S.1    Burge, C.2
  • 3
    • 11144230088 scopus 로고    scopus 로고
    • Molecular origins of rapid and continuous morphological evolution
    • Fondon JW, Garner HR: Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci USA 2004, 101:18058-18063.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 18058-18063
    • Fondon, J.W.1    Garner, H.R.2
  • 4
    • 0032499995 scopus 로고    scopus 로고
    • Minimum CAG repeat in the human calmodulin-1 gene 5′ untranslated region is required for full expression
    • Toutenhoofd SL, Garcia F, Zacharias DA, Wilson RA, Strehler EE: Minimum CAG repeat in the human calmodulin-1 gene 5′ untranslated region is required for full expression. Biochim Biophys Acta 1998, 1398:315-320.
    • (1998) Biochim Biophys Acta , vol.1398 , pp. 315-320
    • Toutenhoofd, S.L.1    Garcia, F.2    Zacharias, D.A.3    Wilson, R.A.4    Strehler, E.E.5
  • 5
    • 0031886282 scopus 로고    scopus 로고
    • A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro
    • Meloni R, Albanese V, Ravassard P, Treilhou F, Mallet J: A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro. Hum Mol Genet 1998, 7:423-428.
    • (1998) Hum Mol Genet , vol.7 , pp. 423-428
    • Meloni, R.1    Albanese, V.2    Ravassard, P.3    Treilhou, F.4    Mallet, J.5
  • 6
    • 0036591663 scopus 로고    scopus 로고
    • Dominantly inherited, non-coding microsatellite expansion disorders
    • Ranum LPW, Day JW: Dominantly inherited, non-coding microsatellite expansion disorders. Curr Opin Genet Dev 2002, 12:266-271.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 266-271
    • Ranum, L.P.W.1    Day, J.W.2
  • 7
    • 18844374990 scopus 로고    scopus 로고
    • Genetic structure of island populations of wild cardoon [Cynara carclunculus L. var. sylvestris (Lamk) Fiori] detected by AFLPs and SSRs
    • Portis E, Acquadro A, Comino C, Mauromicale G, Saba E, Lanteri S: Genetic structure of island populations of wild cardoon [Cynara carclunculus L. var. sylvestris (Lamk) Fiori] detected by AFLPs and SSRs. Plant Sci 2005, 169:199-210.
    • (2005) Plant Sci , vol.169 , pp. 199-210
    • Portis, E.1    Acquadro, A.2    Comino, C.3    Mauromicale, G.4    Saba, E.5    Lanteri, S.6
  • 8
    • 8444233467 scopus 로고    scopus 로고
    • Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis
    • Lu H, Redus MA, Coburn JR, Rutger JN, McCouch SR, Tai TH: Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis. Crop Sci 2005, 45:66-76.
    • (2005) Crop Sci , vol.45 , pp. 66-76
    • Lu, H.1    Redus, M.A.2    Coburn, J.R.3    Rutger, J.N.4    McCouch, S.R.5    Tai, T.H.6
  • 9
    • 16444366318 scopus 로고    scopus 로고
    • Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers
    • Saini N, Jain N, Jain S, Jain RK: Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers. Euphytica 2004, 140:133-146.
    • (2004) Euphytica , vol.140 , pp. 133-146
    • Saini, N.1    Jain, N.2    Jain, S.3    Jain, R.K.4
  • 11
    • 0343193135 scopus 로고    scopus 로고
    • Distribution of microsatellites in relation to coding sequences within the Arabidopsis thaliana genome
    • Casacuberta E, Puigdomenech P, Monfort A: Distribution of microsatellites in relation to coding sequences within the Arabidopsis thaliana genome. Plant Sci 2000, 157:97-104.
    • (2000) Plant Sci , vol.157 , pp. 97-104
    • Casacuberta, E.1    Puigdomenech, P.2    Monfort, A.3
  • 14
    • 0028952245 scopus 로고
    • Simple repetitive DNA-sequences from primates - Compilation and analysis
    • Jurka J, Pethiyagoda C: Simple repetitive DNA-sequences from primates - compilation and analysis. J Mol Evol 1995, 40:120-126.
    • (1995) J Mol Evol , vol.40 , pp. 120-126
    • Jurka, J.1    Pethiyagoda, C.2
  • 16
    • 1542327663 scopus 로고    scopus 로고
    • Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification
    • Fiebig A, Kimport R, Preuss D: Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification. Proc Natl Acad Sci USA 2004, 101:3286-3291.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 3286-3291
    • Fiebig, A.1    Kimport, R.2    Preuss, D.3
  • 17
    • 33745027743 scopus 로고    scopus 로고
    • Gramene
    • Gramene [http://www.gramene.org]
  • 18
    • 0024712231 scopus 로고
    • Date of the monocot dicot divergence estimated from chloroplast DNA-sequence data
    • Wolfe KH, Gouy ML, Yang YW, Sharp PM, Li WH: Date of the monocot dicot divergence estimated from chloroplast DNA-sequence data. Proc Natl Acad Sci USA 1989, 86:6201-6205.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 6201-6205
    • Wolfe, K.H.1    Gouy, M.L.2    Yang, Y.W.3    Sharp, P.M.4    Li, W.H.5
  • 19
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision TJ, Brown DG, Tanksley SD: The origins of genomic duplications in Arabidopsis. Science 2000, 290:2114-2117.
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 20
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc G, Hokamp K, Wolfe KH: A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 2003, 13:137-144.
    • (2003) Genome Res , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 21
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 24
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • Blanc G, Wolfe KH: Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 2004, 16:1667-1678.
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 27
    • 0033951367 scopus 로고    scopus 로고
    • Selection against frameshift mutations limits microsatellite expansion in coding DNA
    • Metzgar D, Bytof J., Wills C: Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res 2000, 10:72-80.
    • (2000) Genome Res , vol.10 , pp. 72-80
    • Metzgar, D.1    Bytof, J.2    Wills, C.3
  • 28
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Survey and analysis
    • Toth G, Gaspari Z, Jurka J: Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 2000, 10:967-981.
    • (2000) Genome Res , vol.10 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 29
    • 13144251179 scopus 로고    scopus 로고
    • Plant conserved non-coding sequences and paralogue evolution
    • Lockton S, Gaut BS: Plant conserved non-coding sequences and paralogue evolution. Trends Genet 2005, 21:60-65.
    • (2005) Trends Genet , vol.21 , pp. 60-65
    • Lockton, S.1    Gaut, B.S.2
  • 30
    • 33745031880 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR)
    • The Arabidopsis Information Resource (TAIR) [http://www.arabidopsis.org]
  • 31
    • 33745054718 scopus 로고    scopus 로고
    • TIGR Rice Genome Annotation
    • TIGR Rice Genome Annotation [http://rice.tigr.org]
  • 32
    • 0043123037 scopus 로고    scopus 로고
    • Mreps: Efficient and flexible detection of tandem repeats in DNA
    • Kolpakov R, Bana G, Kucherov G: mreps: efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Res 2003, 31:3672-3678.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3672-3678
    • Kolpakov, R.1    Bana, G.2    Kucherov, G.3
  • 33
    • 0019859791 scopus 로고
    • The number of repeats expected in random nucleic-acid sequences and found in genes
    • de Wachter R: The number of repeats expected in random nucleic-acid sequences and found in genes. J Theor Biol 1981. 91:71-98.
    • (1981) J Theor Biol , vol.91 , pp. 71-98
    • de Wachter, R.1
  • 34
    • 33745011688 scopus 로고    scopus 로고
    • Gene Ontology
    • Gene Ontology [http://www.geneontology.org]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.