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Volumn 14, Issue 6, 2012, Pages 672-680

Use of Comparative Genomics to Develop EST-SSRs for Red Drum (Sciaenops ocellatus)

Author keywords

Comparative genomics; Data mining; EST SSRs; Red drum

Indexed keywords

GENES;

EID: 84869141268     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-012-9449-0     Document Type: Article
Times cited : (5)

References (37)
  • 2
    • 33847051947 scopus 로고    scopus 로고
    • The molecular ecologist's guide to expressed sequence tags
    • Bouck A, Vision T (2007) The molecular ecologist's guide to expressed sequence tags. Mol Ecol 16: 907-924.
    • (2007) Mol Ecol , vol.16 , pp. 907-924
    • Bouck, A.1    Vision, T.2
  • 5
    • 25644444008 scopus 로고    scopus 로고
    • Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags
    • Coulibaly I, Gharbi K, Danzmann RG, Yao J, Rexroad CE (2005) Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags. Anim Genet 36: 309-315.
    • (2005) Anim Genet , vol.36 , pp. 309-315
    • Coulibaly, I.1    Gharbi, K.2    Danzmann, R.G.3    Yao, J.4    Rexroad, C.E.5
  • 7
    • 34547168853 scopus 로고    scopus 로고
    • EST-SSRs as a resource for population genetic analyses
    • Ellis JR, Burke JM (2007) EST-SSRs as a resource for population genetic analyses. Heredity 99: 125-132.
    • (2007) Heredity , vol.99 , pp. 125-132
    • Ellis, J.R.1    Burke, J.M.2
  • 8
    • 33745907286 scopus 로고    scopus 로고
    • High genetic diversity in a rare and endangered sunflower as compared to a common congener
    • Ellis JR, Pashley CH, Burke JM, Mccauley DE (2006) High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol Ecol 15: 2345-2355.
    • (2006) Mol Ecol , vol.15 , pp. 2345-2355
    • Ellis, J.R.1    Pashley, C.H.2    Burke, J.M.3    Mccauley, D.E.4
  • 9
    • 0030426499 scopus 로고    scopus 로고
    • Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes
    • Estoup A, Largiader CR, Perrot E, Chourrout D (1996) Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol Mar Biol Biotechnol 5: 295-298.
    • (1996) Mol Mar Biol Biotechnol , vol.5 , pp. 295-298
    • Estoup, A.1    Largiader, C.R.2    Perrot, E.3    Chourrout, D.4
  • 10
    • 33751002621 scopus 로고    scopus 로고
    • Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs
    • Housley D, Zalewski Z, Beckett S, Venta P (2006) Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs. BMC Genomics 7: 253.
    • (2006) BMC Genomics , vol.7 , pp. 253
    • Housley, D.1    Zalewski, Z.2    Beckett, S.3    Venta, P.4
  • 11
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 12
    • 33244486093 scopus 로고    scopus 로고
    • An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus
    • Ju Z, Wells MC, Martinez A, Hazlewood L, Walter RB (2005) An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus. In Silico Biol 5: 439-463.
    • (2005) In Silico Biol , vol.5 , pp. 439-463
    • Ju, Z.1    Wells, M.C.2    Martinez, A.3    Hazlewood, L.4    Walter, R.B.5
  • 13
    • 45749143950 scopus 로고    scopus 로고
    • Genetic linkage map of olive flounder, Paralichthys olivaceus
    • Kang JH (2008) Genetic linkage map of olive flounder, Paralichthys olivaceus. Int J Biol Sci 4: 143.
    • (2008) Int J Biol Sci , vol.4 , pp. 143
    • Kang, J.H.1
  • 14
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • Kantety RV, La Rota M, Matthews DE, Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48: 501-510.
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    La Rota, M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 15
  • 16
    • 41149083958 scopus 로고    scopus 로고
    • Utility of EST-derived SSRs as population genetics markers in a beetle
    • Kim KS, Ratcliffe ST, French BW, Liu L, Sappington TW (2008) Utility of EST-derived SSRs as population genetics markers in a beetle. J Hered 99: 112-124.
    • (2008) J Hered , vol.99 , pp. 112-124
    • Kim, K.S.1    Ratcliffe, S.T.2    French, B.W.3    Liu, L.4    Sappington, T.W.5
  • 18
    • 42549140665 scopus 로고    scopus 로고
    • A set of microsatellite markers for use in the endangered sea urchin Strongylocentrotus nudus developed from S. purpuratus ESTs
    • Li J, Li Q (2008) A set of microsatellite markers for use in the endangered sea urchin Strongylocentrotus nudus developed from S. purpuratus ESTs. Conservat Genet 9: 743-745.
    • (2008) Conservat Genet , vol.9 , pp. 743-745
    • Li, J.1    Li, Q.2
  • 20
    • 27644514554 scopus 로고    scopus 로고
    • Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy
    • Perez F, Ortiz J, Zhinaula M, Gonzabay C, Calderon J, Volckaert F (2005) Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy. Mar Biotechnol 7: 554-569.
    • (2005) Mar Biotechnol , vol.7 , pp. 554-569
    • Perez, F.1    Ortiz, J.2    Zhinaula, M.3    Gonzabay, C.4    Calderon, J.5    Volckaert, F.6
  • 23
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43: 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 24
    • 36849080837 scopus 로고    scopus 로고
    • genepop'007: a complete re-implementation of the genepop software for Windows and Linux
    • Rousset F (2008) genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8: 103-106.
    • (2008) Mol Ecol Resour , vol.8 , pp. 103-106
    • Rousset, F.1
  • 25
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Meth Mol Biol 132: 365.
    • (2000) Meth Mol Biol , vol.132 , pp. 365
    • Rozen, S.1    Skaletsky, H.2
  • 28
    • 77949817884 scopus 로고    scopus 로고
    • Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci
    • Tonteri A, Vasemägi A, Lumme J, Primmer CR (2010) Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci. Mol Ecol 19: 1273-1282.
    • (2010) Mol Ecol , vol.19 , pp. 1273-1282
    • Tonteri, A.1    Vasemägi, A.2    Lumme, J.3    Primmer, C.R.4
  • 29
    • 4344606590 scopus 로고    scopus 로고
    • Micro-checker: software for identifying and correcting genotyping errors in microsatellite data
    • van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
    • (2004) Mol Ecol Notes , vol.4 , pp. 535-538
    • van Oosterhout, C.1    Hutchinson, W.F.2    Wills, D.P.M.3    Shipley, P.4
  • 30
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: features and applications
    • Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23: 48-55.
    • (2005) Trends Biotechnol , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 31
    • 79956354483 scopus 로고    scopus 로고
    • In silico mining and characterization of simple sequence repeats from gilthead sea bream (Sparus aurata) expressed sequence tags (EST-SSRs); PCR amplification, polymorphism evaluation and multiplexing and cross-species assays
    • Vogiatzi E, Lagnel J, Pakaki V, Louro B, Canario AV, Reinhardt R, Kotoulas G, Magoulas A, Tsigenopoulos CS (2011) In silico mining and characterization of simple sequence repeats from gilthead sea bream (Sparus aurata) expressed sequence tags (EST-SSRs); PCR amplification, polymorphism evaluation and multiplexing and cross-species assays. Marine Genomics 4: 83-91.
    • (2011) Marine Genomics , vol.4 , pp. 83-91
    • Vogiatzi, E.1    Lagnel, J.2    Pakaki, V.3    Louro, B.4    Canario, A.V.5    Reinhardt, R.6    Kotoulas, G.7    Magoulas, A.8    Tsigenopoulos, C.S.9
  • 32
    • 34848917832 scopus 로고    scopus 로고
    • Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica
    • Wang Y, Guo X (2007) Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica. Mar Biotechnol 9: 500-511.
    • (2007) Mar Biotechnol , vol.9 , pp. 500-511
    • Wang, Y.1    Guo, X.2
  • 33
    • 23944472335 scopus 로고    scopus 로고
    • Polymorphic EST-SSR markers and their mode of inheritance in Fenneropenaeus chinensis
    • Wang H, Li F, Xiang J (2005) Polymorphic EST-SSR markers and their mode of inheritance in Fenneropenaeus chinensis. Aquaculture 249: 107-114.
    • (2005) Aquaculture , vol.249 , pp. 107-114
    • Wang, H.1    Li, F.2    Xiang, J.3
  • 34
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 35
    • 41149100524 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of EST-SSRs in the Pacific oyster (Crassostrea gigas)
    • Yu H, Li Q (2008) Exploiting EST databases for the development and characterization of EST-SSRs in the Pacific oyster (Crassostrea gigas). J Hered 99: 208-214.
    • (2008) J Hered , vol.99 , pp. 208-214
    • Yu, H.1    Li, Q.2
  • 36
    • 1842866976 scopus 로고    scopus 로고
    • Microsatellites within genes and ESTs of common carp and their applicability in silver crucian carp
    • Yue GH, Ho MY, Orban L, Komen J (2004) Microsatellites within genes and ESTs of common carp and their applicability in silver crucian carp. Aquaculture 234: 85-98.
    • (2004) Aquaculture , vol.234 , pp. 85-98
    • Yue, G.H.1    Ho, M.Y.2    Orban, L.3    Komen, J.4
  • 37
    • 47349106854 scopus 로고    scopus 로고
    • Characterization of 28 polymorphic microsatellites for Japanese sea urchin (Strongylocentrotus intermedius) via mining EST database of a related species (S. purpuratus)
    • Zhou Z-C, Zou L-L, Dong Y, He C-B, Liu W-D, Deng H, Wang L-M (2008) Characterization of 28 polymorphic microsatellites for Japanese sea urchin (Strongylocentrotus intermedius) via mining EST database of a related species (S. purpuratus). Annales Zoologici Fennici 45: 4.
    • (2008) Annales Zoologici Fennici , vol.45 , pp. 4
    • Zhou, Z.C.1    Zou, L.L.2    Dong, Y.3    He, C.B.4    Liu, W.D.5    Deng, H.6    Wang, L.M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.