Monitoring of Saccharomyces cerevisiae, Hanseniaspora uvarum, and Starmerella bacillaris (synonym Candida zemplinina) populations during alcoholic fermentation by fluorescence in situ hybridization

International Journal of Food Microbiology

Volumn 191, Issue , 2014, Pages 1-9

  Wang, Chunxiao ^a   Esteve Zarzoso, Braulio ^a   Mas, Albert ^a  

^a UNIVERSITAT ROVIRA I VIRGILI   (Spain)

Author keywords

Culture independent techniques; Epifluorescence microscopy; FISH; Flow cytometry; Wine ecology

Indexed keywords

RIBOSOME RNA;

ALCOHOLIC FERMENTATION; ARTICLE; CELL SPECIFICITY; FERMENTATION; FERMENTATION MONITORING; FLOW CYTOMETRY; FLUORESCENCE IN SITU HYBRIDIZATION; FUNGUS; HANSENIASPORA; HANSENIASPORA UVARUM; MICROBIAL POPULATION DYNAMICS; MIXED CELL CULTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; POPULATION; POPULATION SIZE; SACCHAROMYCES CEREVISIAE; STARMERELLA BACILLARIS; WINE; ASCOMYCETES; FOOD CONTROL; GENETICS; MICROBIOLOGY; PHYSIOLOGY; PROCEDURES; STANDARDS; TEMPERATURE; VALIDATION STUDY;

CANDIDA ZEMPLININA; HANSENIASPORA UVARUM; SACCHAROMYCES CEREVISIAE; STARMERELLA;

ASCOMYCOTA; FERMENTATION; FLOW CYTOMETRY; FOOD MICROBIOLOGY; HANSENIASPORA; IN SITU HYBRIDIZATION, FLUORESCENCE; RNA, RIBOSOMAL; SACCHAROMYCES CEREVISIAE; TEMPERATURE; WINE;

EID: 84907562794     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2014.08.014     Document Type: Article

References (31)

1. Amann R., Fuchs B.M. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat. Rev. Microbiol. 2008, 6(5):339-348.
2. Andorrà I., Landi S., Mas A., Esteve-Zarzoso B., Guillamón J.M. Effect of fermentation temperature on microbial population evolution using culture-independent and dependent techniques. Food Res. Int. 2010, 43:773-779.
3. Andorrà I., Esteve-Zarzoso B., Guillamón J.M., Mas A. Determination of viable wine yeast using DNA binding dyes and quantitative PCR. Int. J. Food Microbiol. 2010, 144:257-262.
4. Andorrà I., Monteiro M., Esteve-Zarzoso B., Albergaria H., Mas A. Analysis and direct quantification of Saccharomyces cerevisiae and Hanseniaspora guilliermondii populations during alcoholic fermentation by fluorescence in situ hybridization, flow cytometry and quantitative PCR. Food Microbiol. 2011, 28:1483-1491.
5. Andorrà I., Berradre M., Mas A., Esteve-Zarzoso B., Guillamón J.M. Effect of mixed culture fermentations on yeast populations and aroma profile. LWT Food Sci. Technol. 2012, 49:8-13.
6. Branco P., Monteiro M., Moura P., Albergaria H. Survival rate of wine-related yeasts during alcoholic fermentation assessed by direct live/dead staining combined with fluorescence in situ hybridization. Int. J. Food Microbiol. 2012, 158:49-57.
7. Cocolin L., Mills D.A. Wine yeast inhibition by sulfur dioxide: a comparison of culture-dependent and independent methods. Am. J. Enol. Vitic. 2003, 54(2):125-130.
8. Cocolin L., Bission L.F., Mills D.A. Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol. Lett. 2000, 189:81-87.
9. Csoma H., Sipiczki M. Taxonomic reclassification of Candida stellata strains reveals frequent occurrence of Candida zemplinina in wine fermentation. FEMS Yeast Res. 2008, 8:328-336.
10. Díaz M., Herrero M., García L.A., Quirós C. Application of flow cytometry to industrial microbial bioprocesses. Biochem. Eng. J. 2010, 48:385-407.
11. Divol B., Lonvaud-Funel A. Evidence for viable but nonculturable yeasts in botrytis-affected wine. J. Appl. Microbiol. 2005, 99:85-93.
12. Duarte F.L., Pimentel N.H., Teixeira A., Fonseca Á. Saccharomyces bacillaris is not a synonym of Candida stellata: reinstatement as Starmerella bacillaris comb. nov. Antonie Van Leeuwenhoek 2012, 102:653-658.
13. Esteve-Zarzoso B., Belloch C., Uruburu F., Querol A. Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int. J. Syst. Bacteriol. 1999, 49:329-337.
14. Fleet G.H. Yeast interactions and wine flavour. Int. J. Food Microbiol. 2003, 86:11-22.
15. Fleet G.H. Wine yeast for the future. FEMS Yeast Res. 2008, 8:979-995.
16. Herrero M., Quirós C., García L.A., Díaz M. Use of flow cytometry to follow the physiological states of microorganisms in cider fermentation processes. Appl. Environ. Microbiol. 2006, 72(10):6725-6733.
17. Hierro N., Esteve-Zarzoso B., González Á., Mas A., Guillamón J.M. Real-time quantitative PCR (QPCR) and reverse transcription-QPCR for detection and enumeration of total yeasts in wine. Appl. Environ. Microbiol. 2006, 72(11):7148-7155.
18. Inácio J., Behrens S., Fuchs B.M., Fonseca Á., Spencer-Martins I., Amann R. In situ accessibility of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oligonucleotide probes comprising the D1 and D2 domains. Appl. Environ. Microbiol. 2003, 69(5):2899-2905.
19. Jindamorakot S., Ninomiya S., Limtong S., Yongmanitchai W., Tuntirungkij M., Potacharoen W., Tanaka K., Kawasaki H., Nakase T. Three new species of bipolar budding yeasts of the genus Hanseniaspora and its anamorph Kloeckera isolated in Thailand. FEMS Yeast Res. 2009, 9:1327-1337.
20. Kurtzman C.P., Robnett C.J. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 1998, 73:331-371.
21. Millet V., Lonvaud-Funel A. The viable but non-culturable state of wine micro-organisms during storage. Lett. Appl. Microbiol. 2000, 30:136-141.
22. Mills D.A., Johannsen E.A., Cocolin L. Yeast diversity and persistence in botrytis-affected wine fermentations. Appl. Environ. Microbiol. 2002, 68(10):4884-4893.
23. Novo M., Beltran G., Rozes N., Guillamon J.M., Sokol S., Leberre V., Francois J., Mas A. Early transcriptional response of wine yeast after rehydration: osmotic shock and metabolic activation. FEMS Yeast Res. 2007, 7:304-316.
24. Rawsthorne H., Phister T.G. The presence of Saccharomyces cerevisiae DNA in various media used to propagate yeasts and its removal by ethidium monoazide. Lett. Appl. Microbiol. 2009, 49:652-654.
25. Regan J.M., Oldernburg P.S., Park H.D., Harrington G.W., Noguera D.R. Simultaneous determination of bacterial viability and identity in biofilms using ethidium monoazide and fluorescent in situ hybridization. Water Sci. Technol. 2003, 47(5):123-128.
26. Ribéreau-Gayon P., Dubourdieu D., Donèche B., Lonvaud A. Handbook of enology. The Microbiology of Wine and Vinifications 2006, vol. 1. John Wiley and Sons Ltd, West Sussex, England. 2nd ed.
27. Röder C., König H., Fröhlich J. Species-specific identification of Dekkera/Brettanomyces yeasts by fluorescently labeled DNA probes targeting the 26S rRNA. FEMS Yeast Res. 2007, 7:1013-1026.
28. Stender H., Kurtzman C., Hyldig-Nielsen J.J., Sørensen D., Broonmer A., Oliverira K., Perry-O'keefe H., Sage A., Young B., Coull J. Identification of Dekkera bruxellensis (Brettanomyces) from wine by fluorescence in situ hybridization using peptide nucleic acid probes. Appl. Environ. Microbiol. 2001, 67(2):938-941.
29. Wang C., Liu Y. Dynamic study of yeast species and Saccharomyces cerevisiae strains during the spontaneous fermentations of Muscat blanc in Jingyang, China. Food Microbiol. 2013, 33:172-177.
30. Xufre A., Albergaria H., Inácio J., Spencer-Martins I., Gírio F. Application of fluorescence in situ hybridisation (FISH) to the analysis of yeast population dynamics in winery and laboratory grape must fermentations. Int. J. Food Microbiol. 2006, 108:376-384.
31. Yilmaz L.S., Parnerkar S., Noguera D.R. MathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization. Appl. Environ. Microbiol. 2011, 77(3):1118-1122.