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Volumn 7, Issue 3, 2012, Pages

MicroPIR: An integrated database of microRNA target sites within human promoter sequences

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MESSENGER RNA;

EID: 84858376850     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0033888     Document Type: Article
Times cited : (35)

References (45)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 33749537080 scopus 로고    scopus 로고
    • Principles and effects of microRNA-mediated post-transcriptional gene regulation
    • Engels BM, Hutvagner G, (2006) Principles and effects of microRNA-mediated post-transcriptional gene regulation. Oncogene 25: 6163-6169.
    • (2006) Oncogene , vol.25 , pp. 6163-6169
    • Engels, B.M.1    Hutvagner, G.2
  • 3
    • 53549133101 scopus 로고    scopus 로고
    • The perfect storm of tiny RNAs
    • Ruvkun G, (2008) The perfect storm of tiny RNAs. Nat Med 14: 1041-1045.
    • (2008) Nat Med , vol.14 , pp. 1041-1045
    • Ruvkun, G.1
  • 4
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 5
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • Carrington JC, Ambros V, (2003) Role of microRNAs in plant and animal development. Science 301: 336-338.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 6
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
    • (2008) Nat Rev Genet , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 7
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V, (2004) The functions of animal microRNAs. Nature 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 9
    • 58149179989 scopus 로고    scopus 로고
    • miR2Disease: a manually curated database for microRNA deregulation in human disease
    • Jiang Q, Wang Y, Hao Y, Juan L, Teng M, et al. (2009) miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res 37: D98-104.
    • (2009) Nucleic Acids Res , vol.37 , pp. 98-104
    • Jiang, Q.1    Wang, Y.2    Hao, Y.3    Juan, L.4    Teng, M.5
  • 10
    • 43049134831 scopus 로고    scopus 로고
    • MicroRNomics: a newly emerging approach for disease biology
    • Zhang C, (2008) MicroRNomics: a newly emerging approach for disease biology. Physiol Genomics 33: 139-147.
    • (2008) Physiol Genomics , vol.33 , pp. 139-147
    • Zhang, C.1
  • 11
    • 33144490646 scopus 로고    scopus 로고
    • A microRNA expression signature of human solid tumors defines cancer gene targets
    • Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, et al. (2006) A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci U S A 103: 2257-2261.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 2257-2261
    • Volinia, S.1    Calin, G.A.2    Liu, C.G.3    Ambs, S.4    Cimmino, A.5
  • 12
    • 53549101290 scopus 로고    scopus 로고
    • The evolution of our thinking about microRNAs
    • Ambros V, (2008) The evolution of our thinking about microRNAs. Nat Med 14: 1036-1040.
    • (2008) Nat Med , vol.14 , pp. 1036-1040
    • Ambros, V.1
  • 13
    • 40349094597 scopus 로고    scopus 로고
    • MicroRNA-373 induces expression of genes with complementary promoter sequences
    • Place RF, Li LC, Pookot D, Noonan EJ, Dahiya R, (2008) MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc Natl Acad Sci U S A 105: 1608-1613.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 1608-1613
    • Place, R.F.1    Li, L.C.2    Pookot, D.3    Noonan, E.J.4    Dahiya, R.5
  • 14
    • 55849135596 scopus 로고    scopus 로고
    • MicroRNA-directed transcriptional gene silencing in mammalian cells
    • Kim DH, Saetrom P, Snove O Jr, Rossi JJ, (2008) MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc Natl Acad Sci U S A 105: 16230-16235.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16230-16235
    • Kim, D.H.1    Saetrom, P.2    Snove Jr., O.3    Rossi, J.J.4
  • 15
    • 79959347056 scopus 로고    scopus 로고
    • Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters
    • Younger ST, Corey DR, (2011) Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters. Nucleic Acids Res.
    • (2011) Nucleic Acids Res
    • Younger, S.T.1    Corey, D.R.2
  • 16
    • 33847081733 scopus 로고    scopus 로고
    • Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
    • Janowski BA, Younger ST, Hardy DB, Ram R, Huffman KE, et al. (2007) Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nat Chem Biol 3: 166-173.
    • (2007) Nat Chem Biol , vol.3 , pp. 166-173
    • Janowski, B.A.1    Younger, S.T.2    Hardy, D.B.3    Ram, R.4    Huffman, K.E.5
  • 18
    • 67649774470 scopus 로고    scopus 로고
    • Predicting potential miRNA target sites within gene promoters
    • Younger ST, Pertsemlidis A, Corey DR, (2009) Predicting potential miRNA target sites within gene promoters. Bioorg Med Chem Lett 19: 3791-3794.
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 3791-3794
    • Younger, S.T.1    Pertsemlidis, A.2    Corey, D.R.3
  • 19
    • 44149083586 scopus 로고    scopus 로고
    • miRDB: a microRNA target prediction and functional annotation database with a wiki interface
    • Wang X, (2008) miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA 14: 1012-1017.
    • (2008) RNA , vol.14 , pp. 1012-1017
    • Wang, X.1
  • 21
    • 38549092089 scopus 로고    scopus 로고
    • miRGator: an integrated system for functional annotation of microRNAs
    • Nam S, Kim B, Shin S, Lee S, (2008) miRGator: an integrated system for functional annotation of microRNAs. Nucleic Acids Res 36: D159-164.
    • (2008) Nucleic Acids Res , vol.36
    • Nam, S.1    Kim, B.2    Shin, S.3    Lee, S.4
  • 22
    • 58149186499 scopus 로고    scopus 로고
    • miRecords: an integrated resource for microRNA-target interactions
    • Xiao F, Zuo Z, Cai G, Kang S, Gao X, et al. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-110.
    • (2009) Nucleic Acids Res , vol.37
    • Xiao, F.1    Zuo, Z.2    Cai, G.3    Kang, S.4    Gao, X.5
  • 23
    • 79959805164 scopus 로고    scopus 로고
    • miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
    • Dweep H, Sticht C, Pandey P, Gretz N, (2011) miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J Biomed Inform 44: 839-847.
    • (2011) J Biomed Inform , vol.44 , pp. 839-847
    • Dweep, H.1    Sticht, C.2    Pandey, P.3    Gretz, N.4
  • 24
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: a building block for a model organism system database
    • Stein LD, Mungall C, Shu S, Caudy M, Mangone M, et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res 12: 1599-1610.
    • (2002) Genome Res , vol.12 , pp. 1599-1610
    • Stein, L.D.1    Mungall, C.2    Shu, S.3    Caudy, M.4    Mangone, M.5
  • 25
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 26
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355-360.
    • (2010) Nucleic Acids Res , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 28
    • 71549173409 scopus 로고    scopus 로고
    • RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3′ SNP-in-primer and mis-priming from structural variation
    • Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, et al. (2009) RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3′ SNP-in-primer and mis-priming from structural variation. BMC Genomics 10 (Suppl 3): S4.
    • (2009) BMC Genomics , vol.10 , Issue.SUPPL. 3
    • Piriyapongsa, J.1    Ngamphiw, C.2    Assawamakin, A.3    Wangkumhang, P.4    Suwannasri, P.5
  • 29
    • 24644505259 scopus 로고    scopus 로고
    • Fewer genes, more noncoding RNA
    • Claverie JM, (2005) Fewer genes, more noncoding RNA. Science 309: 1529-1530.
    • (2005) Science , vol.309 , pp. 1529-1530
    • Claverie, J.M.1
  • 31
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • Consortium ICGS
    • Consortium ICGS (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
    • (2004) Nature , vol.432 , pp. 695-716
  • 32
  • 34
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: microRNA target prediction easy, fast and flexible
    • Kruger J, Rehmsmeier M, (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34: W451-454.
    • (2006) Nucleic Acids Res , vol.34
    • Kruger, J.1    Rehmsmeier, M.2
  • 35
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
    • (2007) Mol Cell , vol.27 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5
  • 37
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1    Landthaler, M.2    Burger, L.3    Khorshid, M.4    Hausser, J.5
  • 38
    • 78651271270 scopus 로고    scopus 로고
    • CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins
    • Khorshid M, Rodak C, Zavolan M, (2010) CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. Nucleic Acids Res 39: D245-252.
    • (2010) Nucleic Acids Res , vol.39
    • Khorshid, M.1    Rodak, C.2    Zavolan, M.3
  • 39
    • 1542748076 scopus 로고    scopus 로고
    • Aligning multiple genomic sequences with the threaded blockset aligner
    • Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14: 708-715.
    • (2004) Genome Res , vol.14 , pp. 708-715
    • Blanchette, M.1    Kent, W.J.2    Riemer, C.3    Elnitski, L.4    Smit, A.F.5
  • 41
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034-1050.
    • (2005) Genome Res , vol.15 , pp. 1034-1050
    • Siepel, A.1    Bejerano, G.2    Pedersen, J.S.3    Hinrichs, A.S.4    Hou, M.5
  • 44
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • Consortium IH, (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
    • Consortium, I.H.1
  • 45


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.