-
1
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
33749537080
-
Principles and effects of microRNA-mediated post-transcriptional gene regulation
-
Engels BM, Hutvagner G, (2006) Principles and effects of microRNA-mediated post-transcriptional gene regulation. Oncogene 25: 6163-6169.
-
(2006)
Oncogene
, vol.25
, pp. 6163-6169
-
-
Engels, B.M.1
Hutvagner, G.2
-
3
-
-
53549133101
-
The perfect storm of tiny RNAs
-
Ruvkun G, (2008) The perfect storm of tiny RNAs. Nat Med 14: 1041-1045.
-
(2008)
Nat Med
, vol.14
, pp. 1041-1045
-
-
Ruvkun, G.1
-
4
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
5
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC, Ambros V, (2003) Role of microRNAs in plant and animal development. Science 301: 336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
6
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
7
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros V, (2004) The functions of animal microRNAs. Nature 431: 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
8
-
-
79955859316
-
Biological functions of microRNAs: a review
-
Huang Y, Shen XJ, Zou Q, Wang SP, Tang SM, et al. (2011) Biological functions of microRNAs: a review. J Physiol Biochem 67: 129-139.
-
(2011)
J Physiol Biochem
, vol.67
, pp. 129-139
-
-
Huang, Y.1
Shen, X.J.2
Zou, Q.3
Wang, S.P.4
Tang, S.M.5
-
9
-
-
58149179989
-
miR2Disease: a manually curated database for microRNA deregulation in human disease
-
Jiang Q, Wang Y, Hao Y, Juan L, Teng M, et al. (2009) miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res 37: D98-104.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 98-104
-
-
Jiang, Q.1
Wang, Y.2
Hao, Y.3
Juan, L.4
Teng, M.5
-
10
-
-
43049134831
-
MicroRNomics: a newly emerging approach for disease biology
-
Zhang C, (2008) MicroRNomics: a newly emerging approach for disease biology. Physiol Genomics 33: 139-147.
-
(2008)
Physiol Genomics
, vol.33
, pp. 139-147
-
-
Zhang, C.1
-
11
-
-
33144490646
-
A microRNA expression signature of human solid tumors defines cancer gene targets
-
Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, et al. (2006) A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci U S A 103: 2257-2261.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2257-2261
-
-
Volinia, S.1
Calin, G.A.2
Liu, C.G.3
Ambs, S.4
Cimmino, A.5
-
12
-
-
53549101290
-
The evolution of our thinking about microRNAs
-
Ambros V, (2008) The evolution of our thinking about microRNAs. Nat Med 14: 1036-1040.
-
(2008)
Nat Med
, vol.14
, pp. 1036-1040
-
-
Ambros, V.1
-
13
-
-
40349094597
-
MicroRNA-373 induces expression of genes with complementary promoter sequences
-
Place RF, Li LC, Pookot D, Noonan EJ, Dahiya R, (2008) MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc Natl Acad Sci U S A 105: 1608-1613.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 1608-1613
-
-
Place, R.F.1
Li, L.C.2
Pookot, D.3
Noonan, E.J.4
Dahiya, R.5
-
14
-
-
55849135596
-
MicroRNA-directed transcriptional gene silencing in mammalian cells
-
Kim DH, Saetrom P, Snove O Jr, Rossi JJ, (2008) MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc Natl Acad Sci U S A 105: 16230-16235.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16230-16235
-
-
Kim, D.H.1
Saetrom, P.2
Snove Jr., O.3
Rossi, J.J.4
-
15
-
-
79959347056
-
Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters
-
Younger ST, Corey DR, (2011) Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters. Nucleic Acids Res.
-
(2011)
Nucleic Acids Res
-
-
Younger, S.T.1
Corey, D.R.2
-
16
-
-
33847081733
-
Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
-
Janowski BA, Younger ST, Hardy DB, Ram R, Huffman KE, et al. (2007) Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nat Chem Biol 3: 166-173.
-
(2007)
Nat Chem Biol
, vol.3
, pp. 166-173
-
-
Janowski, B.A.1
Younger, S.T.2
Hardy, D.B.3
Ram, R.4
Huffman, K.E.5
-
17
-
-
33751251990
-
Small dsRNAs induce transcriptional activation in human cells
-
Li LC, Okino ST, Zhao H, Pookot D, Place RF, et al. (2006) Small dsRNAs induce transcriptional activation in human cells. Proc Natl Acad Sci U S A 103: 17337-17342.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17337-17342
-
-
Li, L.C.1
Okino, S.T.2
Zhao, H.3
Pookot, D.4
Place, R.F.5
-
18
-
-
67649774470
-
Predicting potential miRNA target sites within gene promoters
-
Younger ST, Pertsemlidis A, Corey DR, (2009) Predicting potential miRNA target sites within gene promoters. Bioorg Med Chem Lett 19: 3791-3794.
-
(2009)
Bioorg Med Chem Lett
, vol.19
, pp. 3791-3794
-
-
Younger, S.T.1
Pertsemlidis, A.2
Corey, D.R.3
-
19
-
-
44149083586
-
miRDB: a microRNA target prediction and functional annotation database with a wiki interface
-
Wang X, (2008) miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA 14: 1012-1017.
-
(2008)
RNA
, vol.14
, pp. 1012-1017
-
-
Wang, X.1
-
20
-
-
38549120729
-
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes
-
Hsu SD, Chu CH, Tsou AP, Chen SJ, Chen HC, et al. (2008) miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic Acids Res 36: D165-169.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Hsu, S.D.1
Chu, C.H.2
Tsou, A.P.3
Chen, S.J.4
Chen, H.C.5
-
21
-
-
38549092089
-
miRGator: an integrated system for functional annotation of microRNAs
-
Nam S, Kim B, Shin S, Lee S, (2008) miRGator: an integrated system for functional annotation of microRNAs. Nucleic Acids Res 36: D159-164.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Nam, S.1
Kim, B.2
Shin, S.3
Lee, S.4
-
22
-
-
58149186499
-
miRecords: an integrated resource for microRNA-target interactions
-
Xiao F, Zuo Z, Cai G, Kang S, Gao X, et al. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-110.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
-
23
-
-
79959805164
-
miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
-
Dweep H, Sticht C, Pandey P, Gretz N, (2011) miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J Biomed Inform 44: 839-847.
-
(2011)
J Biomed Inform
, vol.44
, pp. 839-847
-
-
Dweep, H.1
Sticht, C.2
Pandey, P.3
Gretz, N.4
-
24
-
-
18644378331
-
The generic genome browser: a building block for a model organism system database
-
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res 12: 1599-1610.
-
(2002)
Genome Res
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
-
25
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
26
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355-360.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
28
-
-
71549173409
-
RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3′ SNP-in-primer and mis-priming from structural variation
-
Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, et al. (2009) RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3′ SNP-in-primer and mis-priming from structural variation. BMC Genomics 10 (Suppl 3): S4.
-
(2009)
BMC Genomics
, vol.10
, Issue.SUPPL. 3
-
-
Piriyapongsa, J.1
Ngamphiw, C.2
Assawamakin, A.3
Wangkumhang, P.4
Suwannasri, P.5
-
29
-
-
24644505259
-
Fewer genes, more noncoding RNA
-
Claverie JM, (2005) Fewer genes, more noncoding RNA. Science 309: 1529-1530.
-
(2005)
Science
, vol.309
, pp. 1529-1530
-
-
Claverie, J.M.1
-
31
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Consortium ICGS
-
Consortium ICGS (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
32
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
33
-
-
0347755531
-
The UCSC Table Browser data retrieval tool
-
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, et al. (2004) The UCSC Table Browser data retrieval tool. Nucleic Acids Res 32: D493-496.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
-
34
-
-
33747849920
-
RNAhybrid: microRNA target prediction easy, fast and flexible
-
Kruger J, Rehmsmeier M, (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34: W451-454.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kruger, J.1
Rehmsmeier, M.2
-
35
-
-
34250805982
-
MicroRNA targeting specificity in mammals: determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
-
36
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB, (2003) Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
37
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
-
38
-
-
78651271270
-
CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins
-
Khorshid M, Rodak C, Zavolan M, (2010) CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. Nucleic Acids Res 39: D245-252.
-
(2010)
Nucleic Acids Res
, vol.39
-
-
Khorshid, M.1
Rodak, C.2
Zavolan, M.3
-
39
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14: 708-715.
-
(2004)
Genome Res
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.5
-
40
-
-
78651320424
-
The UCSC Genome Browser database: update 2011
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic Acids Res 39: D876-882.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
-
41
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
-
43
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29: 308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
-
44
-
-
79959524146
-
A haplotype map of the human genome
-
Consortium IH, (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
Consortium, I.H.1
-
45
-
-
0036087166
-
JSNP: a database of common gene variations in the Japanese population
-
Hirakawa M, Tanaka T, Hashimoto Y, Kuroda M, Takagi T, et al. (2002) JSNP: a database of common gene variations in the Japanese population. Nucleic Acids Res 30: 158-162.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 158-162
-
-
Hirakawa, M.1
Tanaka, T.2
Hashimoto, Y.3
Kuroda, M.4
Takagi, T.5
|